Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0008881

Physical Location & Seq

Genomic Coordinates Reverse (-)

27380664 .. 27381978

Gene Structure 1315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1170600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGCTTCCTGCCTCTCTGCCTCCCAACCTCATTGTCTTGGACTTCTCCTTCAACTCCTTTTCCGGAAGCATTCCAACCAAAATCCAGAATCTTACACGCCTCACTACGTTGTGCCTCCAAAACAATTTCATCTCTGAAGCCATCCCCAATCTGAACCTCCCTGCACTTAAGCTTTTGAATTTGAGCTACAATAACTTGAATGGCTCGGTTCCATATTCCCTCGAAAAATATTCGAACTCTTCATTTGTTGGGAATCCTCAGTTATGTGGAGAACCTCTCAACAATTGTTCTAAAACCACCTCCTCTACCCCTTCTGCATCCTCTGCTTTCTTGCCACCCTCGCCAACCATTCTGAAAAATCACCATGCTACACTCATAAAAATACTCAGCCCGGGATCCATTATTGTCATGCCATTTGGGTGCTCTGCAGTGTTTATTCTTCTAGTCCTGGTTGTTGTCATATGCTGCTGGAAACGGACTAACAAAGTAGGTGGCGGGATGTTGAAAGGGAAGGCTGCGGGTGATGGAAAGGGTGAGATGCCTAAGGATTTTGGGAGTGGAGTGCAAGAGGCTGAGAAGAACAAGCTGTTCTTCTTTGAAGGTTGCTATTACAATTTTGATCTTGAGGATCTGCTGAGAGCGTCAGCGGAAGTTCTCGTCAAAGGAAGTTTCGGAACAACTTACAAAGCTGTATTGGATGAGGAAACAACGGTTGTGGTGAAGCGGTTGAGGGAAGTTGTGGTGGGGAAGAGGGAGTTTGAGCAGCATATGGAGGTGGTGGAGAGGGTAGGGAAGCACCAGAATGTCCTGCCTCCTCTCGCTTATTATTTCTCCAAAGATGATAAGCCTTTGGTGTACAACTACATGCCAACAGGAAGCTTGTTTGCACACTTGCATGGAAGCAGTGATGCTGGGAGGTCTCCACCAGACTGGGATTCAAGAGTAAAGATTTCGCTCGGAATTGCCAAGGGACTTGCCCACATTCATTCCGAGGGTTCAAAATCTAGCCATGGCAATATAAAGTCCACAAACGTCCTCCTCACCCAAGAACTCGAGGCTTGCATCTCGGACGCAGGGTTGTGTCCTCTAATGAACTTCCCTCCAGCCATGTCCCGGGCCATGGGATATCGCGCTCCAGAGGCAACTGACATGCGGAAAATCACTCACAAATTGATGTCTATAGCTTTGGTGTGCTCCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

401

Amino Acids

43.51

Weight (kDa)

8.69

Isoelectric Point (pI)

40.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	217 - 389	5.9e-18	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	219 - 390	5.6e-15	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008881)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g26210
malus_domestica	MD01G1170600.v1.1 MD01G1170700.v1.1 MD01G1170900.v1.1 MD07G1237300.v1.1
prunus_persica	Prupe.2G266400_v2.0.a1 Prupe.2G266400_v2.0.a1 Prupe.2G266400_v2.0.a1 Prupe.2G266400_v2.0.a1
pyrus_communis	pycom01g18300 pycom01g18310 pycom07g21350
rosa_chinensis	RchiOBHm_Chr1g0372661
rosa_laevigata	RLG00000026881
rosa_multiflora	Rmu_ssc0000419.1_g000004
rosa_roxburghii	Rroxscaffold_4G00284770 Rroxscaffold_4G00284780
rosa_rugosa	Rorug01G0373700
rosa_samantha	Rh1AG382200 Rh1BG345600 Rh1CG359000 Rh1DG376800
rosa_wichuraiana	Rw1G033620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1131
AccIII	TCCGGA	1 cut(s)	62
AciI	CCGC	5 cut(s)	495, 518, 647, 724, 1153
AclWI	GGATC	3 cut(s)	390, 403, 636
AcsI	RAATTY	1 cut(s)	178
AcuI	CTGAAG	1 cut(s)	156
AfaI	GTAC	1 cut(s)	857
AfiI	CCNNNNNNNGG	2 cut(s)	1113, 1120
AflII	CTTAAG	1 cut(s)	167
AgsI	TTSAA	7 cut(s)	52, 178, 199, 505, 599, 939, 999
AjnI	CCWGG	1 cut(s)	447
AluBI	AGCT	6 cut(s)	172, 186, 586, 689, 879, 1184
AluI	AGCT	6 cut(s)	172, 186, 586, 689, 879, 1184
Alw21I	GWGCWC	2 cut(s)	425, 1196
Alw26I	GTCTC	1 cut(s)	924
AlwI	GGATC	3 cut(s)	390, 403, 636
Ama87I	CYCGRG	3 cut(s)	391, 1052, 1113
Aor13HI	TCCGGA	1 cut(s)	62
AoxI	GGCC	1 cut(s)	1116
ApeKI	GCWGC	3 cut(s)	465, 515, 763
ApoI	RAATTY	1 cut(s)	178
AspLEI	GCGC	1 cut(s)	1133
AspS9I	GGNCC	1 cut(s)	1116
AsuC2I	CCSGG	4 cut(s)	392, 393, 1114, 1115
AsuHPI	GGTGA	5 cut(s)	353, 533, 545, 730, 1033
AsuII	TTCGAA	1 cut(s)	233
AvaI	CYCGRG	3 cut(s)	391, 1052, 1113
AxyI	CCTNAGG	1 cut(s)	543
BamHI	GGATCC	1 cut(s)	395
Bbv12I	GWGCWC	2 cut(s)	425, 1196
BbvI	GCAGC	3 cut(s)	452, 502, 775
BccI	CCATC	2 cut(s)	149, 518
BciT130I	CCWGG	1 cut(s)	449
BcnI	CCSGG	4 cut(s)	392, 393, 1114, 1115
BcoDI	GTCTC	1 cut(s)	924
BfaI	CTAG	2 cut(s)	443, 1005
BfmI	CTRYAG	2 cut(s)	426, 1179
BfrI	CTTAAG	1 cut(s)	167
BisI	GCNGC	3 cut(s)	466, 516, 764
BlsI	GCNGC	3 cut(s)	467, 517, 765
Bme1390I	CCNGG	5 cut(s)	392, 393, 449, 1114, 1115
BmeT110I	CYCGRG	3 cut(s)	391, 1052, 1113
BmgT120I	GGNCC	1 cut(s)	1116
BmiI	GGNNCC	2 cut(s)	210, 397
BmrFI	CCNGG	5 cut(s)	392, 393, 449, 1114, 1115
BmrI	ACTGGG	1 cut(s)	940
BmsI	GCATC	4 cut(s)	326, 528, 898, 1071
BmuI	ACTGGG	1 cut(s)	940
BplI	GAGNNNNNCTC	2 cut(s)	261, 293
BpmI	CTGGAG	2 cut(s)	1086, 1119
Bpu14I	TTCGAA	1 cut(s)	233
BpuEI	CTTGAG	1 cut(s)	644
BpuMI	CCSGG	4 cut(s)	392, 393, 1114, 1115
BsaI	GGTCTC	1 cut(s)	924
BsaJI	CCNNGG	6 cut(s)	391, 966, 990, 1009, 1113, 1119
BsaWI	WCCGGW	1 cut(s)	62
Bsc4I	CCNNNNNNNGG	2 cut(s)	1113, 1120
Bse1I	ACTGG	1 cut(s)	935
Bse21I	CCTNAGG	1 cut(s)	543
BseAI	TCCGGA	1 cut(s)	62
BseBI	CCWGG	1 cut(s)	449
BseDI	CCNNGG	6 cut(s)	391, 966, 990, 1009, 1113, 1119
BseGI	GGATG	4 cut(s)	141, 317, 504, 703
BseLI	CCNNNNNNNGG	2 cut(s)	1113, 1120
BseMII	CTCAG	4 cut(s)	272, 400, 564, 626
BseNI	ACTGG	1 cut(s)	935
BseRI	GAGGAG	4 cut(s)	292, 804, 1028, 1186
BseXI	GCAGC	3 cut(s)	452, 502, 775
BseYI	CCCAGC	1 cut(s)	911
BsgI	GTGCAG	1 cut(s)	147
Bsh1236I	CGCG	1 cut(s)	1131
BshFI	GGCC	1 cut(s)	1118
BsiHKAI	GWGCWC	2 cut(s)	425, 1196
BsiHKCI	CYCGRG	3 cut(s)	391, 1052, 1113
BsiSI	CCGG	3 cut(s)	63, 392, 1114
BslFI	GGGAC	2 cut(s)	984, 1096
BslI	CCNNNNNNNGG	2 cut(s)	1113, 1120
BsmAI	GTCTC	1 cut(s)	924
BsmFI	GGGAC	2 cut(s)	984, 1096
BsmI	GAATGC	1 cut(s)	69
BsnI	GGCC	1 cut(s)	1118
Bso31I	GGTCTC	1 cut(s)	924
BsoBI	CYCGRG	3 cut(s)	391, 1052, 1113
Bsp119I	TTCGAA	1 cut(s)	233
Bsp1286I	GDGCHC	2 cut(s)	425, 1196
Bsp13I	TCCGGA	1 cut(s)	62
Bsp1407I	TGTACA	1 cut(s)	855
Bsp143I	GATC	3 cut(s)	395, 619, 628
Bsp19I	CCATGG	2 cut(s)	1009, 1119
BspACI	CCGC	5 cut(s)	495, 518, 647, 724, 1153
BspANI	GGCC	1 cut(s)	1118
BspCNI	CTCAG	4 cut(s)	271, 399, 565, 627
BspEI	TCCGGA	1 cut(s)	62
BspFNI	CGCG	1 cut(s)	1131
BspLI	GGNNCC	2 cut(s)	210, 397
BspMAI	CTGCAG	1 cut(s)	430
BspPI	GGATC	3 cut(s)	390, 403, 636
BspT104I	TTCGAA	1 cut(s)	233
BspTI	CTTAAG	1 cut(s)	167
BspTNI	GGTCTC	1 cut(s)	924
BsrGI	TGTACA	1 cut(s)	855
BsrI	ACTGG	1 cut(s)	935
BssECI	CCNNGG	6 cut(s)	391, 966, 990, 1009, 1113, 1119
BssMI	GATC	3 cut(s)	395, 619, 628
BssT1I	CCWWGG	3 cut(s)	966, 1009, 1119
Bst2UI	CCWGG	1 cut(s)	449
Bst4CI	ACNGT	1 cut(s)	712
Bst6I	CTCTTC	2 cut(s)	244, 743
BstAFI	CTTAAG	1 cut(s)	167
BstAPI	GCANNNNNTGC	1 cut(s)	323
BstAUI	TGTACA	1 cut(s)	855
BstBI	TTCGAA	1 cut(s)	233
BstC8I	GCNNGC	1 cut(s)	1060
BstDEI	CTNAG	6 cut(s)	258, 386, 543, 573, 635, 1200
BstDSI	CCRYGG	2 cut(s)	1009, 1119
BstF5I	GGATG	4 cut(s)	141, 317, 504, 703
BstFNI	CGCG	1 cut(s)	1131
BstHHI	GCGC	1 cut(s)	1133
BstKTI	GATC	3 cut(s)	398, 622, 631
BstMAI	GTCTC	1 cut(s)	924
BstMBI	GATC	3 cut(s)	395, 619, 628
BstMWI	GCNNNNNNNGC	3 cut(s)	323, 340, 1139
BstNI	CCWGG	1 cut(s)	449
BstNSI	RCATGY	2 cut(s)	868, 1153
BstSCI	CCNGG	5 cut(s)	390, 391, 447, 1112, 1113
BstSFI	CTRYAG	2 cut(s)	426, 1179
BstUI	CGCG	1 cut(s)	1131
BstV1I	GCAGC	3 cut(s)	452, 502, 775
BstX2I	RGATCY	2 cut(s)	395, 628
BstXI	CCANNNNNNTGG	1 cut(s)	930
BstYI	RGATCY	2 cut(s)	395, 628
Bsu36I	CCTNAGG	1 cut(s)	543
BsuRI	GGCC	1 cut(s)	1118
BtgI	CCRYGG	2 cut(s)	1009, 1119
BtsCI	GGATG	4 cut(s)	141, 317, 504, 703
BtsI	GCAGTG	2 cut(s)	435, 910
BtsIMutI	CAGTG	2 cut(s)	435, 910
Cac8I	GCNNGC	1 cut(s)	1060
CfoI	GCGC	1 cut(s)	1133
Cfr13I	GGNCC	1 cut(s)	1116
Cfr9I	CCCGGG	2 cut(s)	391, 1113
CseI	GACGC	2 cut(s)	630, 1079
Csp6I	GTAC	1 cut(s)	856
CspCI	CAANNNNNGTGG	4 cut(s)	472, 507, 696, 731
CviAII	CATG	8 cut(s)	365, 409, 865, 896, 1010, 1108, 1120, 1150
CviQI	GTAC	1 cut(s)	856
DdeI	CTNAG	6 cut(s)	258, 386, 543, 573, 635, 1200
DpnI	GATC	3 cut(s)	397, 621, 630
DpnII	GATC	3 cut(s)	395, 619, 628
Eam1104I	CTCTTC	2 cut(s)	244, 743
EarI	CTCTTC	2 cut(s)	244, 743
Eco130I	CCWWGG	3 cut(s)	966, 1009, 1119
Eco31I	GGTCTC	1 cut(s)	924
Eco32I	GATATC	1 cut(s)	1127
Eco57I	CTGAAG	1 cut(s)	156
Eco81I	CCTNAGG	1 cut(s)	543
Eco88I	CYCGRG	3 cut(s)	391, 1052, 1113
EcoRII	CCWGG	1 cut(s)	447
EcoRV	GATATC	1 cut(s)	1127
EcoT14I	CCWWGG	3 cut(s)	966, 1009, 1119
ErhI	CCWWGG	3 cut(s)	966, 1009, 1119
FaeI	CATG	8 cut(s)	368, 412, 868, 899, 1013, 1111, 1123, 1153
FalI	AAGNNNNNCTT	2 cut(s)	575, 607
FaqI	GGGAC	2 cut(s)	984, 1096
FatI	CATG	8 cut(s)	364, 408, 864, 895, 1009, 1107, 1119, 1149
FauI	CCCGC	2 cut(s)	488, 511
FauNDI	CATATG	2 cut(s)	461, 768
Fnu4HI	GCNGC	3 cut(s)	466, 516, 764
FokI	GGATG	4 cut(s)	128, 304, 511, 710
Fsp4HI	GCNGC	3 cut(s)	466, 516, 764
FspBI	CTAG	2 cut(s)	443, 1005
GlaI	GCGC	1 cut(s)	1132
GluI	GCNGC	3 cut(s)	466, 516, 764
GsaI	CCCAGC	1 cut(s)	915
GsuI	CTGGAG	2 cut(s)	1086, 1119
HaeIII	GGCC	1 cut(s)	1118
HapII	CCGG	3 cut(s)	63, 392, 1114
HgaI	GACGC	2 cut(s)	630, 1079
HhaI	GCGC	1 cut(s)	1133
Hin1II	CATG	8 cut(s)	368, 412, 868, 899, 1013, 1111, 1123, 1153
Hin6I	GCGC	1 cut(s)	1131
HinP1I	GCGC	1 cut(s)	1131
HindIII	AAGCTT	2 cut(s)	170, 877
HinfI	GANTC	3 cut(s)	88, 253, 935
HpaII	CCGG	3 cut(s)	63, 392, 1114
HphI	GGTGA	5 cut(s)	353, 533, 545, 730, 1033
Hpy166II	GTNNAC	2 cut(s)	856, 1026
Hpy188I	TCNGA	7 cut(s)	136, 153, 354, 674, 959, 991, 1069
Hpy188III	TCNNGA	5 cut(s)	63, 85, 623, 939, 1136
Hpy8I	GTNNAC	2 cut(s)	856, 1026
HpyAV	CCTTC	4 cut(s)	58, 321, 505, 593
HpyCH4III	ACNGT	1 cut(s)	712
HpyCH4IV	ACGT	2 cut(s)	107, 1032
HpyCH4V	TGCA	7 cut(s)	164, 317, 428, 565, 887, 895, 1062
HpyF10VI	GCNNNNNNNGC	3 cut(s)	323, 340, 1139
HpyF3I	CTNAG	6 cut(s)	258, 386, 543, 573, 635, 1200
HpySE526I	ACGT	2 cut(s)	107, 1032
Hsp92II	CATG	8 cut(s)	368, 412, 868, 899, 1013, 1111, 1123, 1153
HspAI	GCGC	1 cut(s)	1131
Kpn2I	TCCGGA	1 cut(s)	62
Kzo9I	GATC	3 cut(s)	395, 619, 628
LmnI	GCTCC	2 cut(s)	1138, 1199
Lsp1109I	GCAGC	3 cut(s)	452, 502, 775
LweI	GCATC	4 cut(s)	326, 528, 898, 1071
MaeI	CTAG	2 cut(s)	443, 1005
MaeII	ACGT	2 cut(s)	107, 1032
MalI	GATC	3 cut(s)	397, 621, 630
MboI	GATC	3 cut(s)	395, 619, 628
MboII	GAAGA	5 cut(s)	231, 431, 583, 589, 760
MfeI	CAATTG	1 cut(s)	283
MflI	RGATCY	2 cut(s)	395, 628
MhlI	GDGCHC	2 cut(s)	425, 1196
MluCI	AATT	6 cut(s)	124, 178, 283, 613, 960, 1169
MmeI	TCCRAC	1 cut(s)	98
MroI	TCCGGA	1 cut(s)	62
MseI	TTAA	1 cut(s)	168
MslI	CAYNNNNRTG	3 cut(s)	418, 801, 894
MspA1I	CMGCKG	1 cut(s)	647
MspCI	CTTAAG	1 cut(s)	167
MspI	CCGG	3 cut(s)	63, 392, 1114
MspR9I	CCNGG	5 cut(s)	392, 393, 449, 1114, 1115
MunI	CAATTG	1 cut(s)	283
Mva1269I	GAATGC	1 cut(s)	69
MvaI	CCWGG	1 cut(s)	449
MvnI	CGCG	1 cut(s)	1131
MwoI	GCNNNNNNNGC	3 cut(s)	323, 340, 1139
NciI	CCSGG	4 cut(s)	392, 393, 1114, 1115
NcoI	CCATGG	2 cut(s)	1009, 1119
NdeI	CATATG	2 cut(s)	461, 768
NdeII	GATC	3 cut(s)	395, 619, 628
NlaIII	CATG	8 cut(s)	368, 412, 868, 899, 1013, 1111, 1123, 1153
NlaIV	GGNNCC	2 cut(s)	210, 397
NspI	RCATGY	2 cut(s)	868, 1153
NspV	TTCGAA	1 cut(s)	233
PaeR7I	CTCGAG	1 cut(s)	1052
PctI	GAATGC	1 cut(s)	69
PfeI	GAWTC	3 cut(s)	88, 253, 935
PkrI	GCNGC	3 cut(s)	467, 517, 765
Psp6I	CCWGG	1 cut(s)	447
PspFI	CCCAGC	1 cut(s)	911
PspGI	CCWGG	1 cut(s)	447
PspN4I	GGNNCC	2 cut(s)	210, 397
PspPI	GGNCC	1 cut(s)	1116
PspXI	VCTCGAGB	1 cut(s)	1052
PstI	CTGCAG	1 cut(s)	430
PsuI	RGATCY	2 cut(s)	395, 628
RsaI	GTAC	1 cut(s)	857
RsaNI	GTAC	1 cut(s)	856
RseI	CAYNNNNRTG	3 cut(s)	418, 801, 894
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	3 cut(s)	466, 516, 764
Sau3AI	GATC	3 cut(s)	395, 619, 628
Sau96I	GGNCC	1 cut(s)	1116
ScrFI	CCNGG	5 cut(s)	392, 393, 449, 1114, 1115
SduI	GDGCHC	2 cut(s)	425, 1196
SfaNI	GCATC	4 cut(s)	326, 528, 898, 1071
SfcI	CTRYAG	2 cut(s)	426, 1179
Sfr274I	CTCGAG	1 cut(s)	1052
SfuI	TTCGAA	1 cut(s)	233
SlaI	CTCGAG	1 cut(s)	1052
SmaI	CCCGGG	2 cut(s)	393, 1115
SmiMI	CAYNNNNRTG	3 cut(s)	418, 801, 894
SmlI	CTYRAG	3 cut(s)	167, 623, 1052
SmoI	CTYRAG	3 cut(s)	167, 623, 1052
Sse9I	AATT	6 cut(s)	124, 178, 283, 613, 960, 1169
SsiI	CCGC	5 cut(s)	495, 518, 647, 724, 1153
SspI	AATATT	1 cut(s)	230
SspMI	CTAG	2 cut(s)	443, 1005
StyD4I	CCNGG	5 cut(s)	390, 391, 447, 1112, 1113
StyI	CCWWGG	3 cut(s)	966, 1009, 1119
TaaI	ACNGT	1 cut(s)	712
TaiI	ACGT	2 cut(s)	110, 1035
TaqI	TCGA	3 cut(s)	222, 233, 1053
TasI	AATT	6 cut(s)	124, 178, 283, 613, 960, 1169
TatI	WGTACW	1 cut(s)	855
TfiI	GAWTC	3 cut(s)	88, 253, 935
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TscAI	CASTG	2 cut(s)	435, 910
TseI	GCWGC	3 cut(s)	465, 515, 763
TspDTI	ATGAA	4 cut(s)	118, 231, 974, 1106
TspGWI	ACGGA	1 cut(s)	490
TspMI	CCCGGG	2 cut(s)	391, 1113
TspRI	CASTG	2 cut(s)	435, 910
Vha464I	CTTAAG	1 cut(s)	167
XapI	RAATTY	1 cut(s)	178
XceI	RCATGY	2 cut(s)	868, 1153
XhoI	CTCGAG	1 cut(s)	1052
XmaI	CCCGGG	2 cut(s)	391, 1113
XspI	CTAG	2 cut(s)	443, 1005

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.