Rroxscaffold_4G00284770
NAC Family

inactive receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0008881
Physical Location & Seq
Forward (+)
6320501 .. 6322571
2071 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00284770.1

Sequence Viewer

Length: 489 bp
ATGAAGCTCAAGTCCTCCATTGCTGAACTTATCTTCCTTTTCCCTATACTCCCTTTCTTGTTTTCCTCAGTCATTGCTGACCTTAACATTGATAAAGAAGCCCTCCTTGAATTTGCTGCCAATGTCTTTCATACACAAAAACTCAACTGGAATAGTTCTACACCAGTTTGCTCCTCTTGGGTTGGAATCACTTGCAATGTAAACCAAACCAGTGTGATTGATATCCATCTTCCTGCCATTGGACTCTTTGGCTCAATCCCAAACAACACCATTGGAAAGCTTGATGCTCTTAGAGTCCTTAGTCTCCACTCCAATTTCCTCTATGGAACTCTTCCTTCTGATGTTCTGTCCATTCATTCATTGAAATTTCTTTACCTCCAAAACAACAACTTCTCTGGTGCCATTCCTGCTTCTCTCTCCCCCCAATCTCATTGTATTAGAGTTATCCTTCAACTCCTTATCTGGGATCATTCCAACCATCATTCATAA

Protein Analysis

162

Amino Acids

17.92

Weight (kDa)

6.69

Isoelectric Point (pI)

32.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 29 - 66 4.3e-09 Leucine rich repeat N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 398
AclWI GGATC 1 cut(s) 474
AcsI RAATTY 2 cut(s) 110, 365
AfiI CCNNNNNNNGG 2 cut(s) 239, 463
AgsI TTSAA 3 cut(s) 110, 364, 452
AloI GAACNNNNNNTCC 2 cut(s) 18, 50
AluBI AGCT 2 cut(s) 7, 280
AluI AGCT 2 cut(s) 7, 280
Alw26I GTCTC 1 cut(s) 308
AlwI GGATC 1 cut(s) 474
ApeKI GCWGC 1 cut(s) 116
ApoI RAATTY 2 cut(s) 110, 365
BanI GGYRCC 1 cut(s) 398
BbvI GCAGC 1 cut(s) 103
BccI CCATC 2 cut(s) 234, 486
BcoDI GTCTC 1 cut(s) 308
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
BmiI GGNNCC 1 cut(s) 400
BmsI GCATC 1 cut(s) 274
BsaBI GATNNNNATC 2 cut(s) 221, 225
Bsc4I CCNNNNNNNGG 2 cut(s) 239, 463
Bse1I ACTGG 3 cut(s) 152, 164, 210
Bse3DI GCAATG 3 cut(s) 18, 72, 202
Bse8I GATNNNNATC 2 cut(s) 221, 225
BseJI GATNNNNATC 2 cut(s) 221, 225
BseLI CCNNNNNNNGG 2 cut(s) 239, 463
BseMI GCAATG 3 cut(s) 18, 72, 202
BseMII CTCAG 1 cut(s) 81
BseNI ACTGG 3 cut(s) 152, 164, 210
BseRI GAGGAG 1 cut(s) 163
BseXI GCAGC 1 cut(s) 103
BshNI GGYRCC 1 cut(s) 398
BslI CCNNNNNNNGG 2 cut(s) 239, 463
BsmAI GTCTC 1 cut(s) 308
Bsp143I GATC 1 cut(s) 466
BspCNI CTCAG 1 cut(s) 80
BspLI GGNNCC 1 cut(s) 400
BspPI GGATC 1 cut(s) 474
BspT107I GGYRCC 1 cut(s) 398
BsrDI GCAATG 3 cut(s) 18, 72, 202
BsrI ACTGG 3 cut(s) 152, 164, 210
BssMI GATC 1 cut(s) 466
Bst6I CTCTTC 1 cut(s) 336
BstDEI CTNAG 3 cut(s) 67, 290, 299
BstKTI GATC 1 cut(s) 469
BstMAI GTCTC 1 cut(s) 308
BstMBI GATC 1 cut(s) 466
BstMWI GCNNNNNNNGC 1 cut(s) 407
BstV1I GCAGC 1 cut(s) 103
BtsIMutI CAGTG 1 cut(s) 217
CviJI RGCY 4 cut(s) 7, 101, 252, 280
CviKI_1 RGCY 4 cut(s) 7, 101, 252, 280
DdeI CTNAG 3 cut(s) 67, 290, 299
DpnI GATC 1 cut(s) 468
DpnII GATC 1 cut(s) 466
Eam1104I CTCTTC 1 cut(s) 336
EarI CTCTTC 1 cut(s) 336
Eco32I GATATC 1 cut(s) 223
EcoRV GATATC 1 cut(s) 223
FaiI YATR 4 cut(s) 47, 132, 324, 487
FalI AAGNNNNNCTT 2 cut(s) 90, 122
Fnu4HI GCNGC 1 cut(s) 117
Fsp4HI GCNGC 1 cut(s) 117
GluI GCNGC 1 cut(s) 117
HindIII AAGCTT 1 cut(s) 278
HinfI GANTC 3 cut(s) 186, 243, 294
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 1 cut(s) 340
Hpy8I GTNNAC 1 cut(s) 202
HpyAV CCTTC 2 cut(s) 345, 458
HpyCH4V TGCA 1 cut(s) 195
HpyF10VI GCNNNNNNNGC 1 cut(s) 407
HpyF3I CTNAG 3 cut(s) 67, 290, 299
Kzo9I GATC 1 cut(s) 466
LmnI GCTCC 1 cut(s) 176
LpnPI CCDG 7 cut(s) 133, 177, 223, 246, 381, 420, 448
Lsp1109I GCAGC 1 cut(s) 103
LweI GCATC 1 cut(s) 274
MalI GATC 1 cut(s) 468
MboI GATC 1 cut(s) 466
MboII GAAGA 3 cut(s) 25, 221, 323
MluCI AATT 3 cut(s) 110, 313, 365
MlyI GAGTC 2 cut(s) 237, 303
MmeI TCCRAC 1 cut(s) 163
MnlI CCTC 6 cut(s) 25, 76, 113, 184, 329, 386
MseI TTAA 1 cut(s) 84
MwoI GCNNNNNNNGC 1 cut(s) 407
NdeII GATC 1 cut(s) 466
NlaIV GGNNCC 1 cut(s) 400
PfeI GAWTC 1 cut(s) 186
PkrI GCNGC 1 cut(s) 118
PleI GAGTC 2 cut(s) 237, 302
PpsI GAGTC 2 cut(s) 237, 302
PspN4I GGNNCC 1 cut(s) 400
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 1 cut(s) 466
SchI GAGTC 2 cut(s) 237, 303
SetI ASST 4 cut(s) 9, 84, 282, 378
SfaNI GCATC 1 cut(s) 274
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
Sse9I AATT 3 cut(s) 110, 313, 365
TasI AATT 3 cut(s) 110, 313, 365
TfiI GAWTC 1 cut(s) 186
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TscAI CASTG 1 cut(s) 217
TseI GCWGC 1 cut(s) 116
TspDTI ATGAA 5 cut(s) 17, 119, 344, 348, 474
TspRI CASTG 1 cut(s) 217
XapI RAATTY 2 cut(s) 110, 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.