Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000419.1

Orthogroup ID

OG0008881

Physical Location & Seq

Genomic Coordinates Forward (+)

11630 .. 13766

Gene Structure 2137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000419.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1947 bp

atgaagctcaagtcctccattgctgaactcatcttccttttccctatactccctttcttgttttcctcagtcattgctgaccttaactccgataaagaagccctccttgaatttgctgccaatgtctttcatacacaaaaactcaactggaatagttctacaccagtttgctcctcttgggttggaatcacttgcaatataaaccaaaccagtgtgattgatatccatcttcctgccattggactctttggctcaatcccaaacaacaccattggaaagcttgatgctcttagagtccttagcctccactccaatttcctctatggaactcttccttctgatgttctgtccattccttcattgaaatttctttacctccaaaacaacaacttctctggtgccattcctgcttctctctcccccaatctcattgtattagagttatccttcaactccttatctgggatcattccaaccatcattcataacctgacaaggcttgcagagttgagtcttcaaaacaattccatctctggtgccatccccaatctgaacctgaaagagcttaagcttttgaatttgagctgtaacaacttgaatggctcaattccatattccctccaaaagtaccctcgttcctcatttcttgggaattctctcttatgtggggaacctctaaaccattgttctaaaatctcatcctcttcaccttctccttcccctattcacttgcctgcagcctcaccagtagccctggaaaatcgaaatgctacccctgccaaaaagttacttggcctaggttttatcattgctttggcaattggaggagcttctgttttgtttattttggtcatcatgatcatcttatgctgtttgaaaaggactagaaagggaggcagtagcatgttgaaagggaagagtgctgcctctagtgatgaaaagactgatcagaagtctataagtttcgggagtggagtgcaagcagcagcaaagaacaagctgttcttcttcgaaggatgcaattacaatttcgatcttgaggatctactgagggcatcagctgaagttcttggaaaaggaagttatgggacaacctacaaggctgttttggatgaggaaacaactgttgtagtgaaaaggctaaaggaaattgttgtgggtaagagggagtttgagcagcatatggaggttgtggagagggttgggaagcacccaaatgttgtgcctcctcgcgcttattattattctagagatgagaagcttttggtctacaactacatgccagcaggaagcttgtttgctcacttgcatggaagcagggatgctggaagatccccgcttgattgggattcaagactaaagatctctcttggaattgcaagggcaattgctcacattcattctaagggtggtcttaaatgcgtccatggtaacataaagtccacaaatgtcctcctaaccgaagaccttgaggcttgcatctcagatgttgggttgactcctctaatgaacttccctgcggctgcatccatgtcacgaagagctactggttatcttgcaccagaggcaattgacatgcgcaaaatgtcccacaaatcagatgtttacagctttggtgtgctcctactcgaaatgctgacagggaaaaccacacttcaacatgcagggcattatgataatgtagtggttgatctcccaaggtgggtgaaatctgttgttcgtgaggaatggactgctgaggtttttgatttggagttgcttagacaacaaggcattgaagaagagatggtgcagatgctgcagattgcattggcatgtgtagcaaagctacctgagtcacgccccaagatggatgaagttgtgagaatgctagaggaatttcggcagtctgacactaggactaggccttcctttgagtctgagcttgatgtgcaaagtaccccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

648

Amino Acids

71.1

Weight (kDa)

8.17

Isoelectric Point (pI)

44.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008881)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g26210
malus_domestica	MD01G1170600.v1.1 MD01G1170700.v1.1 MD01G1170900.v1.1 MD07G1237300.v1.1
prunus_persica	Prupe.2G266400_v2.0.a1 Prupe.2G266400_v2.0.a1 Prupe.2G266400_v2.0.a1 Prupe.2G266400_v2.0.a1
pyrus_communis	pycom01g18300 pycom01g18310 pycom07g21350
rosa_chinensis	RchiOBHm_Chr1g0372661
rosa_laevigata	RLG00000026881
rosa_multiflora	Rmu_ssc0000419.1_g000004
rosa_roxburghii	Rroxscaffold_4G00284770 Rroxscaffold_4G00284780
rosa_rugosa	Rorug01G0373700
rosa_samantha	Rh1AG382200 Rh1BG345600 Rh1CG359000 Rh1DG376800
rosa_wichuraiana	Rw1G033620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1580
AccB1I	GGYRCC	2 cut(s)	398, 536
AccI	GTMKAC	1 cut(s)	1269
AccII	CGCG	1 cut(s)	1233
AciI	CCGC	2 cut(s)	1337, 1520
AclWI	GGATC	3 cut(s)	473, 1050, 1326
AcsI	RAATTY	5 cut(s)	110, 365, 577, 652, 1877
AcuI	CTGAAG	1 cut(s)	1083
AfaI	GTAC	2 cut(s)	629, 1939
AfiI	CCNNNNNNNGG	4 cut(s)	239, 462, 1702, 1849
AflII	CTTAAG	1 cut(s)	566
AjnI	CCWGG	1 cut(s)	753
AloI	GAACNNNNNNTCC	2 cut(s)	18, 50
Alw21I	GWGCWC	1 cut(s)	1623
AlwI	GGATC	3 cut(s)	473, 1050, 1326
AlwNI	CAGNNNCTG	1 cut(s)	1798
AoxI	GGCC	2 cut(s)	793, 1904
ApeKI	GCWGC	8 cut(s)	116, 737, 923, 983, 986, 1177, 1523, 1798
ApoI	RAATTY	5 cut(s)	110, 365, 577, 652, 1877
AspA2I	CCTAGG	1 cut(s)	796
AspLEI	GCGC	2 cut(s)	1235, 1581
AsuHPI	GGTGA	3 cut(s)	699, 735, 1717
AsuII	TTCGAA	1 cut(s)	1011
AvrII	CCTAGG	1 cut(s)	796
BanI	GGYRCC	2 cut(s)	398, 536
BbsI	GAAGAC	2 cut(s)	506, 1470
Bbv12I	GWGCWC	1 cut(s)	1623
BbvCI	CCTCAGC	1 cut(s)	1737
BbvI	GCAGC	8 cut(s)	103, 749, 910, 995, 998, 1189, 1510, 1785
BccI	CCATC	6 cut(s)	234, 485, 536, 548, 1780, 1843
BciT130I	CCWGG	1 cut(s)	755
BclI	TGATCA	2 cut(s)	858, 946
BfaI	CTAG	7 cut(s)	797, 885, 930, 1248, 1871, 1896, 1902
BfmI	CTRYAG	2 cut(s)	735, 1799
BfrI	CTTAAG	1 cut(s)	566
BglII	AGATCT	1 cut(s)	1362
BisI	GCNGC	9 cut(s)	117, 738, 924, 984, 987, 1178, 1521, 1524, 1799
BlnI	CCTAGG	1 cut(s)	796
BlsI	GCNGC	9 cut(s)	118, 739, 925, 985, 988, 1179, 1522, 1525, 1800
Bme1390I	CCNGG	1 cut(s)	755
BmiI	GGNNCC	3 cut(s)	400, 538, 672
BmrFI	CCNGG	1 cut(s)	755
BmsI	GCATC	7 cut(s)	274, 1007, 1064, 1312, 1488, 1535, 1785
BpiI	GAAGAC	2 cut(s)	506, 1470
Bpu10I	CCTNAGC	2 cut(s)	299, 1737
Bpu14I	TTCGAA	1 cut(s)	1011
BpuEI	CTTGAG	2 cut(s)	1058, 1490
BsaBI	GATNNNNATC	2 cut(s)	221, 225
BsaJI	CCNNGG	4 cut(s)	753, 796, 1426, 1697
BsaXI	ACNNNNNCTCC	4 cut(s)	71, 101, 819, 849
Bsc4I	CCNNNNNNNGG	4 cut(s)	239, 462, 1702, 1849
Bse1I	ACTGG	5 cut(s)	152, 164, 210, 746, 1552
Bse3DI	GCAATG	3 cut(s)	18, 72, 807
Bse8I	GATNNNNATC	2 cut(s)	221, 225
BseBI	CCWGG	1 cut(s)	755
BseDI	CCNNGG	4 cut(s)	753, 796, 1426, 1697
BseGI	GGATG	7 cut(s)	540, 698, 1022, 1117, 1327, 1526, 1858
BseJI	GATNNNNATC	2 cut(s)	221, 225
BseLI	CCNNNNNNNGG	4 cut(s)	239, 462, 1702, 1849
BseMI	GCAATG	3 cut(s)	18, 72, 807
BseMII	CTCAG	6 cut(s)	81, 1040, 1497, 1728, 1824, 1911
BseNI	ACTGG	5 cut(s)	152, 164, 210, 746, 1552
BseRI	GAGGAG	4 cut(s)	163, 840, 1218, 1491
BseXI	GCAGC	8 cut(s)	103, 749, 910, 995, 998, 1189, 1510, 1785
BsgI	GTGCAG	1 cut(s)	1811
Bsh1236I	CGCG	1 cut(s)	1233
BshFI	GGCC	2 cut(s)	795, 1906
BshNI	GGYRCC	2 cut(s)	398, 536
BsiHKAI	GWGCWC	1 cut(s)	1623
BslFI	GGGAC	2 cut(s)	1102, 1573
BslI	CCNNNNNNNGG	4 cut(s)	239, 462, 1702, 1849
BsmFI	GGGAC	2 cut(s)	1102, 1573
BsmI	GAATGC	1 cut(s)	1872
BsnI	GGCC	2 cut(s)	795, 1906
Bsp119I	TTCGAA	1 cut(s)	1011
Bsp1286I	GDGCHC	1 cut(s)	1623
Bsp143I	GATC	8 cut(s)	465, 858, 946, 1033, 1042, 1331, 1362, 1690
Bsp19I	CCATGG	1 cut(s)	1426
BspACI	CCGC	2 cut(s)	1337, 1520
BspANI	GGCC	2 cut(s)	795, 1906
BspCNI	CTCAG	6 cut(s)	80, 1041, 1496, 1729, 1825, 1912
BspFNI	CGCG	1 cut(s)	1233
BspHI	TCATGA	1 cut(s)	855
BspLI	GGNNCC	3 cut(s)	400, 538, 672
BspMAI	CTGCAG	2 cut(s)	739, 1803
BspPI	GGATC	3 cut(s)	473, 1050, 1326
BspQI	GCTCTTC	1 cut(s)	1534
BspT104I	TTCGAA	1 cut(s)	1011
BspT107I	GGYRCC	2 cut(s)	398, 536
BspTI	CTTAAG	1 cut(s)	566
BsrDI	GCAATG	3 cut(s)	18, 72, 807
BsrI	ACTGG	5 cut(s)	152, 164, 210, 746, 1552
BssECI	CCNNGG	4 cut(s)	753, 796, 1426, 1697
BssMI	GATC	8 cut(s)	465, 858, 946, 1033, 1042, 1331, 1362, 1690
BssT1I	CCWWGG	3 cut(s)	796, 1426, 1697
Bst2UI	CCWGG	1 cut(s)	755
Bst4CI	ACNGT	1 cut(s)	1126
Bst6I	CTCTTC	5 cut(s)	336, 709, 911, 1534, 1776
BstAFI	CTTAAG	1 cut(s)	566
BstAPI	GCANNNNNTGC	1 cut(s)	1798
BstBI	TTCGAA	1 cut(s)	1011
BstC8I	GCNNGC	5 cut(s)	501, 735, 981, 1284, 1477
BstDSI	CCRYGG	1 cut(s)	1426
BstF5I	GGATG	7 cut(s)	540, 698, 1022, 1117, 1327, 1526, 1858
BstFNI	CGCG	1 cut(s)	1233
BstHHI	GCGC	2 cut(s)	1235, 1581
BstKTI	GATC	8 cut(s)	468, 861, 949, 1036, 1045, 1334, 1365, 1693
BstMBI	GATC	8 cut(s)	465, 858, 946, 1033, 1042, 1331, 1362, 1690
BstMWI	GCNNNNNNNGC	6 cut(s)	407, 776, 1565, 1798, 1820, 1930
BstNI	CCWGG	1 cut(s)	755
BstNSI	RCATGY	5 cut(s)	907, 1282, 1579, 1664, 1818
BstSCI	CCNGG	1 cut(s)	753
BstSFI	CTRYAG	2 cut(s)	735, 1799
BstUI	CGCG	1 cut(s)	1233
BstV1I	GCAGC	8 cut(s)	103, 749, 910, 995, 998, 1189, 1510, 1785
BstV2I	GAAGAC	2 cut(s)	506, 1470
BstX2I	RGATCY	3 cut(s)	1042, 1331, 1362
BstYI	RGATCY	3 cut(s)	1042, 1331, 1362
BsuRI	GGCC	2 cut(s)	795, 1906
BtgI	CCRYGG	1 cut(s)	1426
BtsCI	GGATG	7 cut(s)	540, 698, 1022, 1117, 1327, 1526, 1858
BtsIMutI	CAGTG	1 cut(s)	217
Cac8I	GCNNGC	5 cut(s)	501, 735, 981, 1284, 1477
CaiI	CAGNNNCTG	1 cut(s)	1798
CciI	TCATGA	1 cut(s)	855
CfoI	GCGC	2 cut(s)	1235, 1581
CseI	GACGC	1 cut(s)	1411
Csp6I	GTAC	2 cut(s)	628, 1938
CviQI	GTAC	2 cut(s)	628, 1938
DpnI	GATC	8 cut(s)	467, 860, 948, 1035, 1044, 1333, 1364, 1692
DpnII	GATC	8 cut(s)	465, 858, 946, 1033, 1042, 1331, 1362, 1690
Eam1104I	CTCTTC	5 cut(s)	336, 709, 911, 1534, 1776
EarI	CTCTTC	5 cut(s)	336, 709, 911, 1534, 1776
Eco130I	CCWWGG	3 cut(s)	796, 1426, 1697
Eco147I	AGGCCT	1 cut(s)	1906
Eco32I	GATATC	1 cut(s)	223
Eco57I	CTGAAG	1 cut(s)	1083
EcoRI	GAATTC	1 cut(s)	652
EcoRII	CCWGG	1 cut(s)	753
EcoRV	GATATC	1 cut(s)	223
EcoT14I	CCWWGG	3 cut(s)	796, 1426, 1697
ErhI	CCWWGG	3 cut(s)	796, 1426, 1697
FalI	AAGNNNNNCTT	4 cut(s)	90, 122, 989, 1021
FaqI	GGGAC	2 cut(s)	1102, 1573
FauI	CCCGC	1 cut(s)	1344
FauNDI	CATATG	1 cut(s)	1182
FbaI	TGATCA	2 cut(s)	858, 946
FblI	GTMKAC	1 cut(s)	1269
Fnu4HI	GCNGC	9 cut(s)	117, 738, 924, 984, 987, 1178, 1521, 1524, 1799
FokI	GGATG	7 cut(s)	527, 685, 1029, 1124, 1334, 1513, 1865
Fsp4HI	GCNGC	9 cut(s)	117, 738, 924, 984, 987, 1178, 1521, 1524, 1799
FspBI	CTAG	7 cut(s)	797, 885, 930, 1248, 1871, 1896, 1902
FspI	TGCGCA	1 cut(s)	1580
GlaI	GCGC	2 cut(s)	1234, 1580
GluI	GCNGC	9 cut(s)	117, 738, 924, 984, 987, 1178, 1521, 1524, 1799
HaeIII	GGCC	2 cut(s)	795, 1906
HgaI	GACGC	1 cut(s)	1411
HhaI	GCGC	2 cut(s)	1235, 1581
Hin6I	GCGC	2 cut(s)	1233, 1579
HinP1I	GCGC	2 cut(s)	1233, 1579
HincII	GTYRAC	1 cut(s)	1497
HindII	GTYRAC	1 cut(s)	1497
HindIII	AAGCTT	4 cut(s)	278, 569, 1259, 1291
HinfI	GANTC	8 cut(s)	186, 243, 294, 511, 1349, 1498, 1835, 1916
HphI	GGTGA	3 cut(s)	699, 735, 1717
Hpy166II	GTNNAC	4 cut(s)	1270, 1443, 1497, 1606
Hpy188I	TCNGA	8 cut(s)	91, 340, 552, 951, 1486, 1600, 1891, 1921
Hpy188III	TCNNGA	7 cut(s)	856, 967, 1037, 1248, 1353, 1536, 1721
Hpy8I	GTNNAC	4 cut(s)	1270, 1443, 1497, 1606
HpyAV	CCTTC	7 cut(s)	345, 366, 457, 720, 726, 1007, 1917
HpyCH4III	ACNGT	1 cut(s)	1126
HpyF10VI	GCNNNNNNNGC	6 cut(s)	407, 776, 1565, 1798, 1820, 1930
HspAI	GCGC	2 cut(s)	1233, 1579
Ksp22I	TGATCA	2 cut(s)	858, 946
Kzo9I	GATC	8 cut(s)	465, 858, 946, 1033, 1042, 1331, 1362, 1690
LguI	GCTCTTC	1 cut(s)	1534
LmnI	GCTCC	3 cut(s)	176, 827, 1626
Lsp1109I	GCAGC	8 cut(s)	103, 749, 910, 995, 998, 1189, 1510, 1785
LweI	GCATC	7 cut(s)	274, 1007, 1064, 1312, 1488, 1535, 1785
MaeI	CTAG	7 cut(s)	797, 885, 930, 1248, 1871, 1896, 1902
MaeIII	GTNAC	5 cut(s)	587, 786, 1430, 1533, 1836
MalI	GATC	8 cut(s)	467, 860, 948, 1035, 1044, 1333, 1364, 1692
MboI	GATC	8 cut(s)	465, 858, 946, 1033, 1042, 1331, 1362, 1690
MfeI	CAATTG	3 cut(s)	819, 1386, 1569
MflI	RGATCY	3 cut(s)	1042, 1331, 1362
MhlI	GDGCHC	1 cut(s)	1623
MlyI	GAGTC	6 cut(s)	237, 303, 520, 1492, 1844, 1925
MmeI	TCCRAC	2 cut(s)	163, 497
MseI	TTAA	3 cut(s)	84, 567, 1416
MslI	CAYNNNNRTG	3 cut(s)	1215, 1308, 1813
MspA1I	CMGCKG	1 cut(s)	1061
MspCI	CTTAAG	1 cut(s)	566
MspR9I	CCNGG	1 cut(s)	755
MunI	CAATTG	3 cut(s)	819, 1386, 1569
Mva1269I	GAATGC	1 cut(s)	1872
MvaI	CCWGG	1 cut(s)	755
MvnI	CGCG	1 cut(s)	1233
MwoI	GCNNNNNNNGC	6 cut(s)	407, 776, 1565, 1798, 1820, 1930
NcoI	CCATGG	1 cut(s)	1426
NdeI	CATATG	1 cut(s)	1182
NdeII	GATC	8 cut(s)	465, 858, 946, 1033, 1042, 1331, 1362, 1690
NlaIV	GGNNCC	3 cut(s)	400, 538, 672
NmuCI	GTSAC	2 cut(s)	1533, 1836
NsbI	TGCGCA	1 cut(s)	1580
NspI	RCATGY	5 cut(s)	907, 1282, 1579, 1664, 1818
NspV	TTCGAA	1 cut(s)	1011
PagI	TCATGA	1 cut(s)	855
PceI	AGGCCT	1 cut(s)	1906
PciSI	GCTCTTC	1 cut(s)	1534
PctI	GAATGC	1 cut(s)	1872
PfeI	GAWTC	2 cut(s)	186, 1349
PkrI	GCNGC	9 cut(s)	118, 739, 925, 985, 988, 1179, 1522, 1525, 1800
PleI	GAGTC	6 cut(s)	237, 302, 519, 1492, 1843, 1924
PpsI	GAGTC	6 cut(s)	237, 302, 519, 1492, 1843, 1924
Psp6I	CCWGG	1 cut(s)	753
PspGI	CCWGG	1 cut(s)	753
PspN4I	GGNNCC	3 cut(s)	400, 538, 672
PstI	CTGCAG	2 cut(s)	739, 1803
PstNI	CAGNNNCTG	1 cut(s)	1798
PsuI	RGATCY	3 cut(s)	1042, 1331, 1362
PvuII	CAGCTG	1 cut(s)	1061
RsaI	GTAC	2 cut(s)	629, 1939
RsaNI	GTAC	2 cut(s)	628, 1938
RseI	CAYNNNNRTG	3 cut(s)	1215, 1308, 1813
SapI	GCTCTTC	1 cut(s)	1534
SaqAI	TTAA	3 cut(s)	84, 567, 1416
SatI	GCNGC	9 cut(s)	117, 738, 924, 984, 987, 1178, 1521, 1524, 1799
Sau3AI	GATC	8 cut(s)	465, 858, 946, 1033, 1042, 1331, 1362, 1690
SchI	GAGTC	6 cut(s)	237, 303, 520, 1492, 1844, 1925
ScrFI	CCNGG	1 cut(s)	755
SduI	GDGCHC	1 cut(s)	1623
SfaNI	GCATC	7 cut(s)	274, 1007, 1064, 1312, 1488, 1535, 1785
SfcI	CTRYAG	2 cut(s)	735, 1799
SfuI	TTCGAA	1 cut(s)	1011
SmiMI	CAYNNNNRTG	3 cut(s)	1215, 1308, 1813
SmlI	CTYRAG	4 cut(s)	8, 566, 1037, 1469
SmoI	CTYRAG	4 cut(s)	8, 566, 1037, 1469
SseBI	AGGCCT	1 cut(s)	1906
SsiI	CCGC	2 cut(s)	1337, 1520
SspMI	CTAG	7 cut(s)	797, 885, 930, 1248, 1871, 1896, 1902
StuI	AGGCCT	1 cut(s)	1906
StyD4I	CCNGG	1 cut(s)	753
StyI	CCWWGG	3 cut(s)	796, 1426, 1697
TaaI	ACNGT	1 cut(s)	1126
TaqI	TCGA	4 cut(s)	763, 1011, 1032, 1629
TauI	GCSGC	1 cut(s)	1523
TfiI	GAWTC	2 cut(s)	186, 1349
Tru1I	TTAA	3 cut(s)	84, 567, 1416
Tru9I	TTAA	3 cut(s)	84, 567, 1416
TscAI	CASTG	1 cut(s)	217
TseFI	GTSAC	2 cut(s)	1533, 1836
TseI	GCWGC	8 cut(s)	116, 737, 923, 983, 986, 1177, 1523, 1798
Tsp45I	GTSAC	2 cut(s)	1533, 1836
TspDTI	ATGAA	8 cut(s)	17, 119, 348, 473, 951, 1388, 1523, 1869
TspRI	CASTG	1 cut(s)	217
Vha464I	CTTAAG	1 cut(s)	566
XapI	RAATTY	5 cut(s)	110, 365, 577, 652, 1877
XbaI	TCTAGA	1 cut(s)	1247
XceI	RCATGY	5 cut(s)	907, 1282, 1579, 1664, 1818
XmaJI	CCTAGG	1 cut(s)	796
XmiI	GTMKAC	1 cut(s)	1269
XspI	CTAG	7 cut(s)	797, 885, 930, 1248, 1871, 1896, 1902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.