Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0008881

Physical Location & Seq

Genomic Coordinates Reverse (-)

17329323 .. 17330427

Gene Structure 1105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g18300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGATGGAGTGCAAGGGTGAGATGCCTAAGGATTTCGGGGGTGGAGTGCAAGAGGCTGAGAAGAACAAGCTGTTCTTCTTTGAAGGTTGCTATTACAATTTTGATCTTGAGGATCTGCTTAGAGCGTCGGCTGAAGTTCTCGGCAAAGGAAGTTTCGGAACAACTTACAAAGCTGTATTGGATGCGGAAACAACGGTTGTGGTGAAGTGGTTGAGGGAAGTTGTGGTGGGGAAGAGGGAGTTTGAGCAGCATATGGAGGTGGTGGAGAGGGTAGGGAAGCACCCGAATGTCCTGCCTCCTCGCGCTTATTATTTCTCCAAAGATGGGAAGCTTTTGGTGTACAACTACGTGCCAACAGGAAGCTTGTTTGCACCCTTGAATGGAAGCAGTGATGCTGGGAGGTCTCCACTAGACTGGGATTCAAGAGTAAAGATTTCGCTCGGGATTGCCAAGGGATTTGCCCACATTCATTCCGAGGGTGCAAAATCTAGCCATGGCAATATAAAGTCCACAAACGTCCTCCTCACCCAAGAACTCGAGGCTTGCATCTCGGACGTAGGGTTGAGTCCTCTAATGAACTTCCCTCCAGCCATGTGCCGGGCCATGGAATATCGTGCTCCAGAGGCATTTGACACGCGGAAAATCACTCACAAATCTGATGTCTATAGCTTTGGTGTGCTCCTCTTAGAAATGCTGACAGGCAAAACCACGCTTCAATATCCGGGTTATGATTGCATGGTTGACCTCCCGCGTTGGGTTAAGTCTGTTGTGCGTGAGGAGTGGACAGCTGAGGTTTTTGATTTGGAACTCGTAAAACAGCAACACAGTGAAGAAGAGATGGTGCAGATGCTGCAGATTGCTTTGGCATGCGTAACAAAATTGCCCGAAACACGCCCCAACATGGATGCAGTAGTCAGAATGATAGAGGAACTCCAGCAATCCGACATGAAAACTAGGCAATCCTCCGAGTCTGAATTTGATGTGCAAACCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

332

Amino Acids

37.31

Weight (kDa)

5.26

Isoelectric Point (pI)

48.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	45 - 307	1.3e-32	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	45 - 305	7e-28	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008881)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g26210
malus_domestica	MD01G1170600.v1.1 MD01G1170700.v1.1 MD01G1170900.v1.1 MD07G1237300.v1.1
prunus_persica	Prupe.2G266400_v2.0.a1 Prupe.2G266400_v2.0.a1 Prupe.2G266400_v2.0.a1 Prupe.2G266400_v2.0.a1
pyrus_communis	pycom01g18300 pycom01g18310 pycom07g21350
rosa_chinensis	RchiOBHm_Chr1g0372661
rosa_laevigata	RLG00000026881
rosa_multiflora	Rmu_ssc0000419.1_g000004
rosa_roxburghii	Rroxscaffold_4G00284770 Rroxscaffold_4G00284780
rosa_rugosa	Rorug01G0373700
rosa_samantha	Rh1AG382200 Rh1BG345600 Rh1CG359000 Rh1DG376800
rosa_wichuraiana	Rw1G033620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	303, 637, 751
AciI	CCGC	3 cut(s)	185, 637, 749
AclWI	GGATC	1 cut(s)	120
AcsI	RAATTY	1 cut(s)	974
AcuI	CTGAAG	1 cut(s)	153
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	6 cut(s)	324, 380, 597, 604, 754, 901
AgsI	TTSAA	4 cut(s)	83, 379, 423, 716
AluBI	AGCT	6 cut(s)	70, 173, 331, 363, 669, 788
AluI	AGCT	6 cut(s)	70, 173, 331, 363, 669, 788
Alw21I	GWGCWC	2 cut(s)	619, 681
Alw26I	GTCTC	1 cut(s)	408
AlwI	GGATC	1 cut(s)	120
AlwNI	CAGNNNCTG	1 cut(s)	850
Ama87I	CYCGRG	2 cut(s)	440, 536
AoxI	GGCC	1 cut(s)	600
ApeKI	GCWGC	2 cut(s)	247, 850
ApoI	RAATTY	1 cut(s)	974
ArsI	GACNNNNNNTTYG	2 cut(s)	645, 677
AspLEI	GCGC	1 cut(s)	305
AspS9I	GGNCC	1 cut(s)	600
AsuC2I	CCSGG	2 cut(s)	599, 723
AsuHPI	GGTGA	3 cut(s)	29, 214, 517
AvaI	CYCGRG	2 cut(s)	440, 536
AxyI	CCTNAGG	1 cut(s)	27
Bbv12I	GWGCWC	2 cut(s)	619, 681
BbvCI	CCTCAGC	1 cut(s)	789
BbvI	GCAGC	2 cut(s)	259, 837
BccI	CCATC	2 cut(s)	317, 832
BcgI	CGANNNNNNTGC	2 cut(s)	274, 308
BcnI	CCSGG	2 cut(s)	599, 723
BcoDI	GTCTC	1 cut(s)	408
BfaI	CTAG	3 cut(s)	410, 489, 954
BfmI	CTRYAG	2 cut(s)	664, 851
BisI	GCNGC	2 cut(s)	248, 851
BlsI	GCNGC	2 cut(s)	249, 852
Bme1390I	CCNGG	2 cut(s)	599, 723
BmeT110I	CYCGRG	2 cut(s)	440, 536
BmgT120I	GGNCC	1 cut(s)	600
BmrFI	CCNGG	2 cut(s)	599, 723
BmrI	ACTGGG	1 cut(s)	424
BmsI	GCATC	6 cut(s)	12, 172, 382, 555, 837, 895
BmuI	ACTGGG	1 cut(s)	424
BpmI	CTGGAG	3 cut(s)	570, 603, 917
Bpu10I	CCTNAGC	1 cut(s)	789
BpuEI	CTTGAG	1 cut(s)	128
BpuMI	CCSGG	2 cut(s)	599, 723
BsaAI	YACGTR	1 cut(s)	349
BsaI	GGTCTC	1 cut(s)	408
BsaJI	CCNNGG	4 cut(s)	450, 474, 493, 603
Bsc4I	CCNNNNNNNGG	6 cut(s)	324, 380, 597, 604, 754, 901
Bse1I	ACTGG	1 cut(s)	419
Bse21I	CCTNAGG	1 cut(s)	27
BseDI	CCNNGG	4 cut(s)	450, 474, 493, 603
BseGI	GGATG	2 cut(s)	187, 910
BseLI	CCNNNNNNNGG	6 cut(s)	324, 380, 597, 604, 754, 901
BseMII	CTCAG	2 cut(s)	48, 780
BseNI	ACTGG	1 cut(s)	419
BseRI	GAGGAG	4 cut(s)	288, 512, 671, 791
BseXI	GCAGC	2 cut(s)	259, 837
BseYI	CCCAGC	1 cut(s)	395
BsgI	GTGCAG	1 cut(s)	863
Bsh1236I	CGCG	3 cut(s)	303, 637, 751
BshFI	GGCC	1 cut(s)	602
BsiHKAI	GWGCWC	2 cut(s)	619, 681
BsiHKCI	CYCGRG	2 cut(s)	440, 536
BsiSI	CCGG	2 cut(s)	598, 722
BslI	CCNNNNNNNGG	6 cut(s)	324, 380, 597, 604, 754, 901
BsmAI	GTCTC	1 cut(s)	408
BsnI	GGCC	1 cut(s)	602
Bso31I	GGTCTC	1 cut(s)	408
BsoBI	CYCGRG	2 cut(s)	440, 536
Bsp1286I	GDGCHC	2 cut(s)	619, 681
Bsp1407I	TGTACA	1 cut(s)	339
Bsp143I	GATC	2 cut(s)	103, 112
Bsp19I	CCATGG	2 cut(s)	493, 603
BspACI	CCGC	3 cut(s)	185, 637, 749
BspANI	GGCC	1 cut(s)	602
BspCNI	CTCAG	2 cut(s)	49, 781
BspFNI	CGCG	3 cut(s)	303, 637, 751
BspMAI	CTGCAG	1 cut(s)	855
BspPI	GGATC	1 cut(s)	120
BspTNI	GGTCTC	1 cut(s)	408
BsrGI	TGTACA	1 cut(s)	339
BsrI	ACTGG	1 cut(s)	419
BssECI	CCNNGG	4 cut(s)	450, 474, 493, 603
BssMI	GATC	2 cut(s)	103, 112
BssT1I	CCWWGG	3 cut(s)	450, 493, 603
Bst4CI	ACNGT	2 cut(s)	196, 827
Bst6I	CTCTTC	2 cut(s)	227, 828
BstAPI	GCANNNNNTGC	1 cut(s)	850
BstAUI	TGTACA	1 cut(s)	339
BstBAI	YACGTR	1 cut(s)	349
BstC8I	GCNNGC	2 cut(s)	544, 868
BstDEI	CTNAG	5 cut(s)	27, 57, 119, 685, 789
BstDSI	CCRYGG	2 cut(s)	493, 603
BstF5I	GGATG	2 cut(s)	187, 910
BstFNI	CGCG	3 cut(s)	303, 637, 751
BstHHI	GCGC	1 cut(s)	305
BstKTI	GATC	2 cut(s)	106, 115
BstMAI	GTCTC	1 cut(s)	408
BstMBI	GATC	2 cut(s)	103, 112
BstMWI	GCNNNNNNNGC	2 cut(s)	623, 850
BstNSI	RCATGY	1 cut(s)	870
BstSCI	CCNGG	2 cut(s)	597, 721
BstSFI	CTRYAG	2 cut(s)	664, 851
BstUI	CGCG	3 cut(s)	303, 637, 751
BstV1I	GCAGC	2 cut(s)	259, 837
BstX2I	RGATCY	1 cut(s)	112
BstXI	CCANNNNNNTGG	1 cut(s)	414
BstYI	RGATCY	1 cut(s)	112
Bsu36I	CCTNAGG	1 cut(s)	27
BsuRI	GGCC	1 cut(s)	602
BtgI	CCRYGG	2 cut(s)	493, 603
BtsCI	GGATG	2 cut(s)	187, 910
BtsI	GCAGTG	1 cut(s)	394
BtsIMutI	CAGTG	2 cut(s)	394, 832
Cac8I	GCNNGC	2 cut(s)	544, 868
CaiI	CAGNNNCTG	1 cut(s)	850
CfoI	GCGC	1 cut(s)	305
Cfr13I	GGNCC	1 cut(s)	600
CseI	GACGC	1 cut(s)	114
Csp6I	GTAC	1 cut(s)	340
CspCI	CAANNNNNGTGG	2 cut(s)	180, 215
CviAII	CATG	7 cut(s)	494, 592, 604, 736, 867, 901, 946
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	5 cut(s)	27, 57, 119, 685, 789
DpnI	GATC	2 cut(s)	105, 114
DpnII	GATC	2 cut(s)	103, 112
Eam1104I	CTCTTC	2 cut(s)	227, 828
EarI	CTCTTC	2 cut(s)	227, 828
Eco130I	CCWWGG	3 cut(s)	450, 493, 603
Eco31I	GGTCTC	1 cut(s)	408
Eco57I	CTGAAG	1 cut(s)	153
Eco81I	CCTNAGG	1 cut(s)	27
Eco88I	CYCGRG	2 cut(s)	440, 536
EcoT14I	CCWWGG	3 cut(s)	450, 493, 603
ErhI	CCWWGG	3 cut(s)	450, 493, 603
FaeI	CATG	7 cut(s)	497, 595, 607, 739, 870, 904, 949
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FatI	CATG	7 cut(s)	493, 591, 603, 735, 866, 900, 945
FauI	CCCGC	1 cut(s)	756
FauNDI	CATATG	1 cut(s)	252
Fnu4HI	GCNGC	2 cut(s)	248, 851
FokI	GGATG	2 cut(s)	194, 917
Fsp4HI	GCNGC	2 cut(s)	248, 851
FspBI	CTAG	3 cut(s)	410, 489, 954
GlaI	GCGC	1 cut(s)	304
GluI	GCNGC	2 cut(s)	248, 851
GsaI	CCCAGC	1 cut(s)	399
GsuI	CTGGAG	3 cut(s)	570, 603, 917
HaeIII	GGCC	1 cut(s)	602
HapII	CCGG	2 cut(s)	598, 722
HgaI	GACGC	1 cut(s)	114
HhaI	GCGC	1 cut(s)	305
Hin1II	CATG	7 cut(s)	497, 595, 607, 739, 870, 904, 949
Hin6I	GCGC	1 cut(s)	303
HinP1I	GCGC	1 cut(s)	303
HincII	GTYRAC	1 cut(s)	742
HindII	GTYRAC	1 cut(s)	742
HindIII	AAGCTT	2 cut(s)	329, 361
HinfI	GANTC	3 cut(s)	419, 565, 968
HpaII	CCGG	2 cut(s)	598, 722
HphI	GGTGA	3 cut(s)	29, 214, 517
Hpy166II	GTNNAC	4 cut(s)	340, 510, 742, 783
Hpy188I	TCNGA	8 cut(s)	158, 475, 553, 658, 917, 943, 967, 973
Hpy188III	TCNNGA	4 cut(s)	107, 423, 442, 620
Hpy8I	GTNNAC	4 cut(s)	340, 510, 742, 783
Hpy99I	CGWCG	1 cut(s)	130
HpyAV	CCTTC	1 cut(s)	77
HpyCH4III	ACNGT	2 cut(s)	196, 827
HpyCH4IV	ACGT	3 cut(s)	348, 516, 555
HpyF10VI	GCNNNNNNNGC	2 cut(s)	623, 850
HpyF3I	CTNAG	5 cut(s)	27, 57, 119, 685, 789
HpySE526I	ACGT	3 cut(s)	348, 516, 555
Hsp92II	CATG	7 cut(s)	497, 595, 607, 739, 870, 904, 949
HspAI	GCGC	1 cut(s)	303
Kzo9I	GATC	2 cut(s)	103, 112
LmnI	GCTCC	2 cut(s)	622, 684
Lsp1109I	GCAGC	2 cut(s)	259, 837
LweI	GCATC	6 cut(s)	12, 172, 382, 555, 837, 895
MaeI	CTAG	3 cut(s)	410, 489, 954
MaeII	ACGT	3 cut(s)	348, 516, 555
MaeIII	GTNAC	1 cut(s)	871
MalI	GATC	2 cut(s)	105, 114
MboI	GATC	2 cut(s)	103, 112
MboII	GAAGA	5 cut(s)	67, 73, 244, 842, 845
MflI	RGATCY	1 cut(s)	112
MhlI	GDGCHC	2 cut(s)	619, 681
MluCI	AATT	3 cut(s)	97, 878, 974
MlyI	GAGTC	2 cut(s)	574, 977
MmeI	TCCRAC	1 cut(s)	966
MseI	TTAA	1 cut(s)	759
MslI	CAYNNNNRTG	1 cut(s)	285
MspA1I	CMGCKG	1 cut(s)	788
MspI	CCGG	2 cut(s)	598, 722
MspR9I	CCNGG	2 cut(s)	599, 723
MvnI	CGCG	3 cut(s)	303, 637, 751
MwoI	GCNNNNNNNGC	2 cut(s)	623, 850
NciI	CCSGG	2 cut(s)	599, 723
NcoI	CCATGG	2 cut(s)	493, 603
NdeI	CATATG	1 cut(s)	252
NdeII	GATC	2 cut(s)	103, 112
NlaIII	CATG	7 cut(s)	497, 595, 607, 739, 870, 904, 949
NmeAIII	GCCGAG	1 cut(s)	120
NspI	RCATGY	1 cut(s)	870
PaeI	GCATGC	1 cut(s)	870
PaeR7I	CTCGAG	1 cut(s)	536
PfeI	GAWTC	1 cut(s)	419
PkrI	GCNGC	2 cut(s)	249, 852
PleI	GAGTC	2 cut(s)	573, 976
PpsI	GAGTC	2 cut(s)	573, 976
Ppu21I	YACGTR	1 cut(s)	349
PspFI	CCCAGC	1 cut(s)	395
PspPI	GGNCC	1 cut(s)	600
PspXI	VCTCGAGB	1 cut(s)	536
PstI	CTGCAG	1 cut(s)	855
PstNI	CAGNNNCTG	1 cut(s)	850
PsuI	RGATCY	1 cut(s)	112
PvuII	CAGCTG	1 cut(s)	788
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
RseI	CAYNNNNRTG	1 cut(s)	285
SaqAI	TTAA	1 cut(s)	759
SatI	GCNGC	2 cut(s)	248, 851
Sau3AI	GATC	2 cut(s)	103, 112
Sau96I	GGNCC	1 cut(s)	600
SchI	GAGTC	2 cut(s)	574, 977
ScrFI	CCNGG	2 cut(s)	599, 723
SduI	GDGCHC	2 cut(s)	619, 681
SfaNI	GCATC	6 cut(s)	12, 172, 382, 555, 837, 895
SfcI	CTRYAG	2 cut(s)	664, 851
Sfr274I	CTCGAG	1 cut(s)	536
SlaI	CTCGAG	1 cut(s)	536
SmiMI	CAYNNNNRTG	1 cut(s)	285
SmlI	CTYRAG	2 cut(s)	107, 536
SmoI	CTYRAG	2 cut(s)	107, 536
SphI	GCATGC	1 cut(s)	870
Sse9I	AATT	3 cut(s)	97, 878, 974
SsiI	CCGC	3 cut(s)	185, 637, 749
SspMI	CTAG	3 cut(s)	410, 489, 954
StyD4I	CCNGG	2 cut(s)	597, 721
StyI	CCWWGG	3 cut(s)	450, 493, 603
TaaI	ACNGT	2 cut(s)	196, 827
TaiI	ACGT	3 cut(s)	351, 519, 558
TaqI	TCGA	1 cut(s)	537
TasI	AATT	3 cut(s)	97, 878, 974
TatI	WGTACW	1 cut(s)	339
TfiI	GAWTC	1 cut(s)	419
Tru1I	TTAA	1 cut(s)	759
Tru9I	TTAA	1 cut(s)	759
TscAI	CASTG	2 cut(s)	394, 832
TseI	GCWGC	2 cut(s)	247, 850
TspDTI	ATGAA	3 cut(s)	458, 590, 962
TspRI	CASTG	2 cut(s)	394, 832
XapI	RAATTY	1 cut(s)	974
XceI	RCATGY	1 cut(s)	870
XhoI	CTCGAG	1 cut(s)	536
XspI	CTAG	3 cut(s)	410, 489, 954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.