Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0008881

Physical Location & Seq

Genomic Coordinates Forward (+)

6322670 .. 6323675

Gene Structure 1006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00284780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGAGGTGGGTAAGAGGGAGTGGAGAGGGTTGGGAAGCACATATGGAGGTTGTGGAGAGGGTTGGGAAGCACAAATGTTGTGCAAATGTTGTGCTCCTCGCGCTTATTATTATTCTAGAGATGAGAAGCTTTTGGTCTACAACTACATGCCAGCAGGAAGCTTGTTTGCTCACTTGCATGGAAGCAGGGATGCTGGAAGATCCCCACTTGATTGGGATTCAAGACTAAAGATCTCTCTTGGAATTGCGAGGGCAATTGCTCACATTCATTCTGAGGGTGGTCATAAATGCGTCCATGGTAACATAAAGTCCACAAATGTCCTCCTAACCGAAGACCTTGAGGCTTGCATCTCAGATGTTGGCTTGACTCCTCTAATGAACTTCCCTGTGGCTGCATCCATGTCACGAAGAGCAACTGGTTATCTTGCACCAGAGGCAATTGACATGCGCAAAATGTCCCACAAATCAGATGTTTACAGCTTTGGTGTGCTCCTACTCGAAATGCTGACAGGGAAAACCACACTTCAACATGCAGGGCATTATGATAATGTAGTGGTTGATCTCCCAAGGTGGGTGAAATCTGTTGTTCGTGAGGAATGGACTGCTGAGGTTTTTGATTTGGAGTTGCTTAGACAACAAGGCATTGAAGAAGAGATGGTGCAGATGCTCCAGATTGCATTGGCATGTGTAGCAAAGCTACCTGAGTCACGCCCCAAGATGGATGAAGTTGTGAGAATGCTAGAGGAATTTCGGCAATCTGACACTAGGACTAGGCCTTCCTCTGAGTCTGAGCTTGATGTGCAAAGTACCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

271

Amino Acids

30.41

Weight (kDa)

5.88

Isoelectric Point (pI)

61.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	36 - 245	7.9e-24	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	39 - 247	1.5e-27	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008881)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g26210
malus_domestica	MD01G1170600.v1.1 MD01G1170700.v1.1 MD01G1170900.v1.1 MD07G1237300.v1.1
prunus_persica	Prupe.2G266400_v2.0.a1 Prupe.2G266400_v2.0.a1 Prupe.2G266400_v2.0.a1 Prupe.2G266400_v2.0.a1
pyrus_communis	pycom01g18300 pycom01g18310 pycom07g21350
rosa_chinensis	RchiOBHm_Chr1g0372661
rosa_laevigata	RLG00000026881
rosa_multiflora	Rmu_ssc0000419.1_g000004
rosa_roxburghii	Rroxscaffold_4G00284770 Rroxscaffold_4G00284780
rosa_rugosa	Rorug01G0373700
rosa_samantha	Rh1AG382200 Rh1BG345600 Rh1CG359000 Rh1DG376800
rosa_wichuraiana	Rw1G033620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	449
AccI	GTMKAC	1 cut(s)	138
AccII	CGCG	1 cut(s)	102
AclWI	GGATC	1 cut(s)	195
AcsI	RAATTY	1 cut(s)	746
AfaI	GTAC	1 cut(s)	808
AfiI	CCNNNNNNNGG	2 cut(s)	571, 718
AgsI	TTSAA	3 cut(s)	222, 527, 647
AluBI	AGCT	5 cut(s)	130, 162, 480, 697, 793
AluI	AGCT	5 cut(s)	130, 162, 480, 697, 793
Alw21I	GWGCWC	2 cut(s)	97, 492
AlwI	GGATC	1 cut(s)	195
AoxI	GGCC	1 cut(s)	773
ApeKI	GCWGC	1 cut(s)	392
ApoI	RAATTY	1 cut(s)	746
AspLEI	GCGC	2 cut(s)	104, 450
AsuHPI	GGTGA	1 cut(s)	586
BbsI	GAAGAC	1 cut(s)	339
Bbv12I	GWGCWC	2 cut(s)	97, 492
BbvCI	CCTCAGC	1 cut(s)	606
BbvI	GCAGC	1 cut(s)	379
BccI	CCATC	2 cut(s)	649, 712
BfaI	CTAG	4 cut(s)	117, 740, 765, 771
BglII	AGATCT	1 cut(s)	231
BisI	GCNGC	1 cut(s)	393
BlsI	GCNGC	1 cut(s)	394
BmsI	GCATC	4 cut(s)	181, 357, 404, 654
BpiI	GAAGAC	1 cut(s)	339
BpmI	CTGGAG	1 cut(s)	653
Bpu10I	CCTNAGC	1 cut(s)	606
BpuEI	CTTGAG	1 cut(s)	359
BsaJI	CCNNGG	2 cut(s)	295, 566
Bsc4I	CCNNNNNNNGG	2 cut(s)	571, 718
Bse1I	ACTGG	1 cut(s)	421
BseDI	CCNNGG	2 cut(s)	295, 566
BseGI	GGATG	3 cut(s)	196, 395, 727
BseLI	CCNNNNNNNGG	2 cut(s)	571, 718
BseMII	CTCAG	6 cut(s)	264, 366, 597, 693, 774, 780
BseNI	ACTGG	1 cut(s)	421
BseRI	GAGGAG	2 cut(s)	87, 360
BseXI	GCAGC	1 cut(s)	379
BsgI	GTGCAG	1 cut(s)	680
Bsh1236I	CGCG	1 cut(s)	102
BshFI	GGCC	1 cut(s)	775
BsiHKAI	GWGCWC	2 cut(s)	97, 492
BslFI	GGGAC	1 cut(s)	442
BslI	CCNNNNNNNGG	2 cut(s)	571, 718
BsmFI	GGGAC	1 cut(s)	442
BsmI	GAATGC	1 cut(s)	741
BsnI	GGCC	1 cut(s)	775
Bsp1286I	GDGCHC	2 cut(s)	97, 492
Bsp143I	GATC	3 cut(s)	200, 231, 559
Bsp19I	CCATGG	1 cut(s)	295
BspANI	GGCC	1 cut(s)	775
BspCNI	CTCAG	6 cut(s)	265, 365, 598, 694, 775, 781
BspFNI	CGCG	1 cut(s)	102
BspPI	GGATC	1 cut(s)	195
BspQI	GCTCTTC	1 cut(s)	403
BsrI	ACTGG	1 cut(s)	421
BssECI	CCNNGG	2 cut(s)	295, 566
BssMI	GATC	3 cut(s)	200, 231, 559
BssT1I	CCWWGG	2 cut(s)	295, 566
Bst6I	CTCTTC	2 cut(s)	403, 645
BstC8I	GCNNGC	2 cut(s)	153, 346
BstDEI	CTNAG	7 cut(s)	273, 352, 606, 629, 702, 783, 789
BstDSI	CCRYGG	1 cut(s)	295
BstF5I	GGATG	3 cut(s)	196, 395, 727
BstFNI	CGCG	1 cut(s)	102
BstHHI	GCGC	2 cut(s)	104, 450
BstKTI	GATC	3 cut(s)	203, 234, 562
BstMBI	GATC	3 cut(s)	200, 231, 559
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 434, 689, 799
BstNSI	RCATGY	4 cut(s)	151, 448, 533, 687
BstUI	CGCG	1 cut(s)	102
BstV1I	GCAGC	1 cut(s)	379
BstV2I	GAAGAC	1 cut(s)	339
BstX2I	RGATCY	2 cut(s)	200, 231
BstXI	CCANNNNNNTGG	1 cut(s)	213
BstYI	RGATCY	2 cut(s)	200, 231
BsuRI	GGCC	1 cut(s)	775
BtgI	CCRYGG	1 cut(s)	295
BtsCI	GGATG	3 cut(s)	196, 395, 727
Cac8I	GCNNGC	2 cut(s)	153, 346
CfoI	GCGC	2 cut(s)	104, 450
CseI	GACGC	1 cut(s)	280
Csp6I	GTAC	1 cut(s)	807
CviAII	CATG	8 cut(s)	148, 179, 296, 400, 445, 530, 684, 813
CviJI	RGCY	9 cut(s)	130, 162, 344, 363, 392, 480, 697, 775, 793
CviKI_1	RGCY	9 cut(s)	130, 162, 344, 363, 392, 480, 697, 775, 793
CviQI	GTAC	1 cut(s)	807
DdeI	CTNAG	7 cut(s)	273, 352, 606, 629, 702, 783, 789
DpnI	GATC	3 cut(s)	202, 233, 561
DpnII	GATC	3 cut(s)	200, 231, 559
Eam1104I	CTCTTC	2 cut(s)	403, 645
EarI	CTCTTC	2 cut(s)	403, 645
Eco130I	CCWWGG	2 cut(s)	295, 566
Eco147I	AGGCCT	1 cut(s)	775
EcoT14I	CCWWGG	2 cut(s)	295, 566
ErhI	CCWWGG	2 cut(s)	295, 566
FaeI	CATG	8 cut(s)	151, 182, 299, 403, 448, 533, 687, 816
FaqI	GGGAC	1 cut(s)	442
FatI	CATG	8 cut(s)	147, 178, 295, 399, 444, 529, 683, 812
FauNDI	CATATG	1 cut(s)	43
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	1 cut(s)	393
FokI	GGATG	3 cut(s)	203, 382, 734
Fsp4HI	GCNGC	1 cut(s)	393
FspBI	CTAG	4 cut(s)	117, 740, 765, 771
FspI	TGCGCA	1 cut(s)	449
GlaI	GCGC	2 cut(s)	103, 449
GluI	GCNGC	1 cut(s)	393
GsuI	CTGGAG	1 cut(s)	653
HaeIII	GGCC	1 cut(s)	775
HgaI	GACGC	1 cut(s)	280
HhaI	GCGC	2 cut(s)	104, 450
Hin1II	CATG	8 cut(s)	151, 182, 299, 403, 448, 533, 687, 816
Hin6I	GCGC	2 cut(s)	102, 448
HinP1I	GCGC	2 cut(s)	102, 448
HindIII	AAGCTT	2 cut(s)	128, 160
HinfI	GANTC	4 cut(s)	218, 367, 704, 785
HphI	GGTGA	1 cut(s)	586
Hpy166II	GTNNAC	3 cut(s)	139, 312, 475
Hpy188I	TCNGA	6 cut(s)	274, 355, 469, 760, 784, 790
Hpy188III	TCNNGA	5 cut(s)	117, 222, 405, 590, 670
Hpy8I	GTNNAC	3 cut(s)	139, 312, 475
HpyAV	CCTTC	1 cut(s)	786
HpyCH4V	TGCA	9 cut(s)	84, 178, 348, 395, 428, 533, 661, 677, 802
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 434, 689, 799
HpyF3I	CTNAG	7 cut(s)	273, 352, 606, 629, 702, 783, 789
Hsp92II	CATG	8 cut(s)	151, 182, 299, 403, 448, 533, 687, 816
HspAI	GCGC	2 cut(s)	102, 448
Kzo9I	GATC	3 cut(s)	200, 231, 559
LguI	GCTCTTC	1 cut(s)	403
LmnI	GCTCC	3 cut(s)	100, 495, 672
Lsp1109I	GCAGC	1 cut(s)	379
LweI	GCATC	4 cut(s)	181, 357, 404, 654
MaeI	CTAG	4 cut(s)	117, 740, 765, 771
MaeIII	GTNAC	3 cut(s)	299, 402, 705
MalI	GATC	3 cut(s)	202, 233, 561
MboI	GATC	3 cut(s)	200, 231, 559
MboII	GAAGA	5 cut(s)	210, 344, 420, 659, 662
MfeI	CAATTG	2 cut(s)	255, 438
MflI	RGATCY	2 cut(s)	200, 231
MhlI	GDGCHC	2 cut(s)	97, 492
MluCI	AATT	4 cut(s)	243, 255, 438, 746
MlyI	GAGTC	3 cut(s)	361, 713, 794
MslI	CAYNNNNRTG	2 cut(s)	177, 682
MunI	CAATTG	2 cut(s)	255, 438
Mva1269I	GAATGC	1 cut(s)	741
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	4 cut(s)	101, 434, 689, 799
NcoI	CCATGG	1 cut(s)	295
NdeI	CATATG	1 cut(s)	43
NdeII	GATC	3 cut(s)	200, 231, 559
NlaIII	CATG	8 cut(s)	151, 182, 299, 403, 448, 533, 687, 816
NmuCI	GTSAC	2 cut(s)	402, 705
NsbI	TGCGCA	1 cut(s)	449
NspI	RCATGY	4 cut(s)	151, 448, 533, 687
PceI	AGGCCT	1 cut(s)	775
PciSI	GCTCTTC	1 cut(s)	403
PctI	GAATGC	1 cut(s)	741
PfeI	GAWTC	1 cut(s)	218
PkrI	GCNGC	1 cut(s)	394
PleI	GAGTC	3 cut(s)	361, 712, 793
PpsI	GAGTC	3 cut(s)	361, 712, 793
PsuI	RGATCY	2 cut(s)	200, 231
RsaI	GTAC	1 cut(s)	808
RsaNI	GTAC	1 cut(s)	807
RseI	CAYNNNNRTG	2 cut(s)	177, 682
SapI	GCTCTTC	1 cut(s)	403
SatI	GCNGC	1 cut(s)	393
Sau3AI	GATC	3 cut(s)	200, 231, 559
SchI	GAGTC	3 cut(s)	361, 713, 794
SduI	GDGCHC	2 cut(s)	97, 492
SfaNI	GCATC	4 cut(s)	181, 357, 404, 654
SmiMI	CAYNNNNRTG	2 cut(s)	177, 682
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	4 cut(s)	243, 255, 438, 746
SseBI	AGGCCT	1 cut(s)	775
SspMI	CTAG	4 cut(s)	117, 740, 765, 771
StuI	AGGCCT	1 cut(s)	775
StyI	CCWWGG	2 cut(s)	295, 566
TaqI	TCGA	1 cut(s)	498
TasI	AATT	4 cut(s)	243, 255, 438, 746
TfiI	GAWTC	1 cut(s)	218
TseFI	GTSAC	2 cut(s)	402, 705
TseI	GCWGC	1 cut(s)	392
Tsp45I	GTSAC	2 cut(s)	402, 705
TspDTI	ATGAA	3 cut(s)	257, 392, 738
XapI	RAATTY	1 cut(s)	746
XbaI	TCTAGA	1 cut(s)	116
XceI	RCATGY	4 cut(s)	151, 448, 533, 687
XmiI	GTMKAC	1 cut(s)	138
XspI	CTAG	4 cut(s)	117, 740, 765, 771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.