Rorug01G0373700
NAC Family

inactive receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0008881
Physical Location & Seq
Forward (+)
48680305 .. 48681071
767 bp
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UTR
Exon/CDS
Intron
Rorug01G0373700.1

Sequence Viewer

Length: 315 bp
ATGGCTTCTTCTGTTTCTGCTAGTACCACCTCTGCCACCACTACTGCTTCAACTGGTCATCATCATCATCATCCACCACCCAATTTCTACTTCGATGAGAAATGGAAGCTGTCAAAGAAAGAAGGGTCATCTCTGTCCTTGTCTTCTTCAAGATCAAGCCGCTCAAGTTCATCTAATTGCCACAAGTCTTCAAACAGAAGGTGTGCGTTTTCAAGGAAGTGTGCTAGATTGGTCAAGGAACAGAGAGCAAGGTTCTACATAGTGAGACGCTGCGTCACTATGCTCATCTGCTGGCACGATTACTCTGATTCATGA

Protein Analysis

104

Amino Acids

11.76

Weight (kDa)

10.05

Isoelectric Point (pI)

71.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DVL PF08137 79 - 97 2.1e-12 DVL family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 162
AciI CCGC 1 cut(s) 160
AfaI GTAC 1 cut(s) 25
AgsI TTSAA 4 cut(s) 51, 150, 192, 213
AhdI GACNNNNNGTC 1 cut(s) 272
AjuI GAANNNNNNNTTGG 2 cut(s) 74, 106
AluBI AGCT 1 cut(s) 109
AluI AGCT 1 cut(s) 109
Alw26I GTCTC 1 cut(s) 259
ApeKI GCWGC 1 cut(s) 270
BbsI GAAGAC 2 cut(s) 135, 180
BbvI GCAGC 1 cut(s) 257
BcoDI GTCTC 1 cut(s) 259
BfaI CTAG 2 cut(s) 21, 225
BisI GCNGC 2 cut(s) 160, 271
BlsI GCNGC 2 cut(s) 161, 272
BmeRI GACNNNNNGTC 1 cut(s) 272
BpiI GAAGAC 2 cut(s) 135, 180
BpuEI CTTGAG 1 cut(s) 148
Bse1I ACTGG 1 cut(s) 58
BseGI GGATG 1 cut(s) 70
BseNI ACTGG 1 cut(s) 58
BseXI GCAGC 1 cut(s) 257
BsmAI GTCTC 1 cut(s) 259
BsmBI CGTCTC 1 cut(s) 259
Bsp143I GATC 1 cut(s) 152
BspACI CCGC 1 cut(s) 160
BspHI TCATGA 1 cut(s) 311
BsrBI CCGCTC 1 cut(s) 162
BsrI ACTGG 1 cut(s) 58
BssMI GATC 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 293
BstF5I GGATG 1 cut(s) 70
BstKTI GATC 1 cut(s) 155
BstMAI GTCTC 1 cut(s) 259
BstMBI GATC 1 cut(s) 152
BstV1I GCAGC 1 cut(s) 257
BstV2I GAAGAC 2 cut(s) 135, 180
BtsCI GGATG 1 cut(s) 70
Cac8I GCNNGC 1 cut(s) 293
CciI TCATGA 1 cut(s) 311
CseI GACGC 2 cut(s) 262, 276
Csp6I GTAC 1 cut(s) 24
CviAII CATG 1 cut(s) 312
CviJI RGCY 3 cut(s) 5, 109, 159
CviKI_1 RGCY 3 cut(s) 5, 109, 159
CviQI GTAC 1 cut(s) 24
DpnI GATC 1 cut(s) 154
DpnII GATC 1 cut(s) 152
DriI GACNNNNNGTC 1 cut(s) 272
Eam1105I GACNNNNNGTC 1 cut(s) 272
Esp3I CGTCTC 1 cut(s) 259
FaeI CATG 1 cut(s) 315
FaiI YATR 3 cut(s) 260, 281, 313
FatI CATG 1 cut(s) 311
Fnu4HI GCNGC 2 cut(s) 160, 271
FokI GGATG 1 cut(s) 57
Fsp4HI GCNGC 2 cut(s) 160, 271
FspBI CTAG 2 cut(s) 21, 225
GluI GCNGC 2 cut(s) 160, 271
HgaI GACGC 2 cut(s) 262, 276
Hin1II CATG 1 cut(s) 315
HinfI GANTC 1 cut(s) 308
Hpy188I TCNGA 1 cut(s) 307
Hpy188III TCNNGA 2 cut(s) 150, 312
HpyAV CCTTC 2 cut(s) 116, 192
Hsp92II CATG 1 cut(s) 315
Kzo9I GATC 1 cut(s) 152
LpnPI CCDG 2 cut(s) 39, 277
Lsp1109I GCAGC 1 cut(s) 257
MaeI CTAG 2 cut(s) 21, 225
MaeIII GTNAC 1 cut(s) 274
MalI GATC 1 cut(s) 154
MbiI CCGCTC 1 cut(s) 162
MboI GATC 1 cut(s) 152
MboII GAAGA 3 cut(s) 135, 138, 180
MluCI AATT 2 cut(s) 82, 175
MnlI CCTC 1 cut(s) 40
NdeII GATC 1 cut(s) 152
NlaIII CATG 1 cut(s) 315
NmuCI GTSAC 1 cut(s) 274
PagI TCATGA 1 cut(s) 311
PfeI GAWTC 1 cut(s) 308
PkrI GCNGC 2 cut(s) 161, 272
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
SatI GCNGC 2 cut(s) 160, 271
Sau3AI GATC 1 cut(s) 152
SetI ASST 4 cut(s) 32, 111, 203, 254
SmlI CTYRAG 1 cut(s) 163
SmoI CTYRAG 1 cut(s) 163
Sse9I AATT 2 cut(s) 82, 175
SsiI CCGC 1 cut(s) 160
SspMI CTAG 2 cut(s) 21, 225
TaqI TCGA 1 cut(s) 93
TasI AATT 2 cut(s) 82, 175
TauI GCSGC 1 cut(s) 162
TfiI GAWTC 1 cut(s) 308
TseFI GTSAC 1 cut(s) 274
TseI GCWGC 1 cut(s) 270
Tsp45I GTSAC 1 cut(s) 274
TspDTI ATGAA 2 cut(s) 159, 300
XspI CTAG 2 cut(s) 21, 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.