Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0009767

Physical Location & Seq

Genomic Coordinates Reverse (-)

32395377 .. 32399567

Gene Structure 4191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1236500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3084 bp

ATGGCTGGTGCTAAAGGTTCATCATGTGCAATTCCTGGCTGTGATGCAAAGGTGATGAGCGATGAACGTGGGGAGGATATTCTTCCTTGTGAGTGTGACTTCAAAATATGTCGGGATTGCTATGCGGATGCTGTGAAAGCTGGGGGTGGTATTTGCCCTGGATGCAAGGAACTGTACAAAATCACAGATTTGGATGAAGTGGCTGCGGATAATAATGCACGCCCACCGCTCCCACTTCCTCTGCCAAAAGTGTTGTCTAAAAATGAGAGGAGATTGTCGCTGATGAAGTCAACAAAGTCAGTGCTAATGAGGAGTCAAACTGGGGATTTTGATCACAATCGGTGGCTCTTTGAAACAAAGGGAACTTATGGGTATGGCAATGCCATATGGCCCAAGGAGGGAGGTTTTGGAAATGATAAAGAAGACGAAGTCGTTGATAGAACAGAATTGTTGAACAAACCATGGAGGCCACTCACACGGAAATTAAAGATACCTGCAGCTGTTCTAAGCCCATATAGGCTTCTGATTTTTGTTCGTATGGTTGTCCTTGCACTGTTCTTGGCATGGAGGATCAATCACCCAAATACTGATGCAATGTGGCTCTGGGGAATGTCAATAGTTTGTGAGATATGGTTTGCTTTTTCTTGGCTTCTTGACCAACTGCCGAAGTTCTGCCCAATCAATCGCTCGACAGATCTTAATGTCTTGAAGGAGAAATTTGAAACACCTAGCCCCAACAACCCCACTGGCAAATCTGATCTTCCAGGCATAGATATCTTTGTGTCCACTGCAGATCCGGACAAAGAACCACCACTTGTCACTGCAAACACCATCTTATCTATTCTAGCTACTGATTACCCTGTTGAAAAGCTAGCTTGCTATGTTTCTGATGATGGAGGTGCCCTTTTAACTTTTGAGGCCATGGCAGAAGCTGCTAGTTTTGCTAATATATGGGTACCATTCTGCCGTAAACATGCTATTGAACCCAGGAATCCTGAATCGTACTTCAACTTGAAGAGGGATCCATACAAGAACAAAGTGCTGTCTGACTTTGTCAAGGATCGAAGAAGGGTAAAACGTGAATATGATGAGTTCAAGGTTCGGATTAATGGACTGCCTGAATCTATACGCCGACGATCAGATGCTTATCATGCTCGGGAAGAAATCAAGGCCATGAAGCTTCAAAGAGAGAACAGAGAGGATGAACCAGTGGAGGGTGTGAAGATTCCCAAGGCAACATGGATGGCTGATGGAACCCACTGGCCAGGGACTTGGTTGACTGCTTCATCTGAGCATTCTAAGAGTGACCATGCTGGTATTATACAGGTGATGTTAAAACCTCCGAGTGATGAACCGCTGCATGGAGCTGATGATGATGCTAGGCTTATCGACCTCACTGATGTTGATATCCGCCTTCCCATGCTTGTTTATGTGTCACGTGAGAAACGTCCAGGCTATGATCACAACAAGAAGGCAGGGGCCATGAATGCCCTCGTTCGAGCCTCTGCCATCATGTCCAATGGCCCGTTCATTCTCAACCTCGACTGTGACCATTATATTTACAACTCTCAGGCAATGAGGGAGGGCATGTGCTTCATGATGGATCGTGGTGGTGACCGCCTTTGTTATGTCCAGTTCCCTCAGAGATTTGAGGGTATCGACCCTTCAGACCGATATGCCAATCACAACACTGTTTTCTTTGATGTCAATATGCGAGCTCTTGATGGTCTTCAGGGCCCAGTGTATGTTGGAACTGGATGTCTCTTTCGTAGAGTTGCCCTGTATGGTTTCGACCCACCTCGGTCAAAAGACACTCACCCAGGTTGTTGCAGTTGCTGCTTTTCTCGTCGCAGAAAGAATGCCTCAGTAGCCAACACCCCAGAAGAAAACCGATCCTTAAGAATGGGTGATTCTGATGATGAAGAGATGAATCTGTCACTGCTGCCTAAGAGGTTTGGGAACTCAACTTTCCTCATTGATTCAATTCCAGTGGCAGAGTTCCAAGGTCGTCCTCTAGCAGATCACCCAGCTGTGAAGAATGGACGCCCACCTGGTGCTCTCACCATTCCCCGTGAGCTTCTTGATGCCTCTACTGTTGCAGAGGCAATCAGTGTCATTTCGTGCTGGTACGAAGACAAGACTGAGTGGGGAGAGCGCGTAGGGTGGATTTACGGATCAGTTACTGAAGATGTGGTCACTGGGTATAGGATGCATAACAGAGGATGGAAATCAGTTTATTGTGTGACCAAGCGAGATGCATTCCGTGGAACTGCTCCTATCAATCTCACAGATAGGTTGCATCAGGTTCTGCGCTGGGCTACTGGCTCAGTTGAGATTTTCTTCTCCCGCAACAATGCCCTCCTAGCCAGCACAAGAATGAAGCTTCTGCAAAGGATAGCATACCTCAATGTGGGCATCTACCCTTTTACCTCCATCTTTCTTATCGTCTACTGCTTCCTCCCGGCGCTTTCCCTCTTCTCTGGTCAGTTCATTGTGCAAAGCCTCAACGTTACTTTCCTGACTTATCTTTTGATCATTACTCTCACGCTATGCATGCTTGCCATCCTTGAGATTAAATGGTCTGGGATCGAGCTAGAGGAGTGGTGGAGAAACGAGCAATTTTGGTTGATTGGAGGGACTAGTGCGCACCTTGCTGCTGTGCTTCAGGGGCTACTGAAAGTTATTGCAGGGATCGAAATCTCTTTCACTTTGACTTCAAAGTCAGGTGGCGAAGACGAGGATGATGAATTTGCCGACCTCTATATTGTGAAATGGTCCTCTCTCATGTTACCACCGATAACAATCATGATGGTGAACTTAATCGCCATAGCAGTTGGGTTCAGCCGCACAATATACAGTGTGATACCGCAGTGGAGCAAGTTAATTGGTGGGGTGTTCTTCAGCTTCTGGGTACTAGCGCATCTGTATCCGTTTGCGAAAGGGTTGATGGGGAGGCGAGGGAGGACGCCCACCATTGTTTTTGTGTGGTCGGGGCTCATTGCGATAACCATCTCTCTTCTGTGGGTGGCAATCAATCCGCCTTCGGGTGCGAACCAAATTGGGGGATCATTCACATTCCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0000139 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005802 GO:0005886 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016021 GO:0016049 GO:0016740 GO:0016757 GO:0016758 GO:0019187 GO:0021700 GO:0022622 GO:0030154 GO:0030173 GO:0031090 GO:0031224 GO:0031228 GO:0031300 GO:0031301 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0051753 GO:0060560 GO:0070085 GO:0071554 GO:0071669 GO:0071695 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0097502 GO:0097708 GO:0098588 GO:0098791 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-RING_4

Protein Analysis

1028

Amino Acids

115.53

Weight (kDa)

6.98

Isoelectric Point (pI)

40.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_4	PF14570	11 - 60	1.6e-17	RING/Ubox like zinc-binding domain
Cellulose_synt	PF03552	257 - 1017	0.0	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009767)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03050 AT5G16910
fragaria_vesca	FvH4_7g34010 FvH4_7g34010 FvH4_7g34010
malus_domestica	MD01G1236500.v1.1 MD07G1309200.v1.1
prunus_persica	Prupe.2G326600_v2.0.a1 Prupe.2G326600_v2.0.a1 Prupe.2G326600_v2.0.a1 Prupe.2G326600_v2.0.a1 Prupe.2G326600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0384261
rosa_laevigata	RLG00000026053
rosa_multiflora	Rmu_sc0011271.1_g000003
rosa_rugosa	Rorug01G0446300
rosa_samantha	Rh1AG471800 Rh1BG429500 Rh1CG442100 Rh1DG462200
rosa_wichuraiana	Rw1G040080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2719
Acc16I	TGCGCA	1 cut(s)	2646
Acc36I	ACCTGC	1 cut(s)	502
Acc65I	GGTACC	1 cut(s)	955
AccB1I	GGYRCC	2 cut(s)	899, 955
AccBSI	CCGCTC	1 cut(s)	229
AccI	GTMKAC	1 cut(s)	2448
AccII	CGCG	1 cut(s)	2157
AccIII	TCCGGA	1 cut(s)	796
AclI	AACGTT	1 cut(s)	2508
AcoI	YGGCCR	1 cut(s)	1262
AcsI	RAATTY	2 cut(s)	716, 2747
AcuI	CTGAAG	5 cut(s)	1650, 1715, 2205, 2648, 2884
AcvI	CACGTG	1 cut(s)	1439
AcyI	GRCGYC	2 cut(s)	2044, 2966
AdeI	CACNNNGTG	1 cut(s)	2054
AfaI	GTAC	5 cut(s)	176, 957, 1004, 2129, 2913
AfiI	CCNNNNNNNGG	6 cut(s)	398, 1214, 1361, 2410, 3044, 3061
AflII	CTTAAG	1 cut(s)	1897
AhlI	ACTAGT	1 cut(s)	2639
AjnI	CCWGG	8 cut(s)	34, 157, 763, 986, 1264, 1450, 1819, 2050
AjuI	GAANNNNNNNTTGG	2 cut(s)	1511, 1543
Alw21I	GWGCWC	2 cut(s)	1720, 2059
Alw26I	GTCTC	1 cut(s)	1766
AlwNI	CAGNNNCTG	5 cut(s)	932, 1836, 2183, 2308, 2907
Ama87I	CYCGRG	1 cut(s)	1155
Aor13HI	TCCGGA	1 cut(s)	796
AoxI	GGCC	8 cut(s)	389, 467, 918, 1170, 1262, 1479, 1522, 1735
ApaI	GGGCCC	1 cut(s)	1739
ApeKI	GCWGC	7 cut(s)	203, 497, 932, 1357, 1836, 1942, 2654
ApoI	RAATTY	2 cut(s)	716, 2747
ArsI	GACNNNNNNTTYG	4 cut(s)	239, 271, 2512, 2544
AseI	ATTAAT	1 cut(s)	1107
Asp718I	GGTACC	1 cut(s)	955
AspLEI	GCGC	5 cut(s)	2157, 2313, 2467, 2647, 2920
AspS9I	GGNCC	6 cut(s)	390, 1479, 1523, 1735, 1736, 2775
AsuC2I	CCSGG	1 cut(s)	2462
AsuHPI	GGTGA	9 cut(s)	64, 569, 1339, 1625, 1808, 1919, 2015, 2053, 2824
AsuNHI	GCTAGC	1 cut(s)	871
AvaI	CYCGRG	1 cut(s)	1155
AvaII	GGWCC	1 cut(s)	2775
BaeGI	GKGCMC	2 cut(s)	904, 1739
BaeI	ACNNNNGTAYC	2 cut(s)	2855, 2888
BalI	TGGCCA	1 cut(s)	1264
BamHI	GGATCC	1 cut(s)	1021
BanI	GGYRCC	2 cut(s)	899, 955
BanII	GRGCYC	3 cut(s)	1720, 1739, 2997
BarI	GAAGNNNNNNTAC	2 cut(s)	1648, 1680
BbrPI	CACGTG	1 cut(s)	1439
BbsI	GAAGAC	4 cut(s)	429, 1721, 2139, 2739
Bbv12I	GWGCWC	2 cut(s)	1720, 2059
BbvI	GCAGC	7 cut(s)	190, 509, 919, 1344, 1823, 1929, 2641
BceAI	ACGGC	1 cut(s)	951
BciT130I	CCWGG	8 cut(s)	36, 159, 765, 988, 1266, 1452, 1821, 2052
BciVI	GTATCC	1 cut(s)	2937
BclI	TGATCA	3 cut(s)	331, 1459, 2532
BcnI	CCSGG	1 cut(s)	2462
BcoDI	GTCTC	1 cut(s)	1766
BcuI	ACTAGT	1 cut(s)	2639
BfmI	CTRYAG	2 cut(s)	495, 789
BfoI	RGCGCY	1 cut(s)	2468
BfrI	CTTAAG	1 cut(s)	1897
BfuAI	ACCTGC	1 cut(s)	502
BfuI	GTATCC	1 cut(s)	2937
BglII	AGATCT	1 cut(s)	694
BisI	GCNGC	8 cut(s)	204, 498, 933, 1358, 1837, 1943, 2655, 2845
BlsI	GCNGC	8 cut(s)	205, 499, 934, 1359, 1838, 1944, 2656, 2846
Bme1390I	CCNGG	9 cut(s)	36, 159, 765, 988, 1266, 1452, 1821, 2052, 2462
Bme18I	GGWCC	1 cut(s)	2775
BmeT110I	CYCGRG	1 cut(s)	1155
BmgT120I	GGNCC	6 cut(s)	390, 1479, 1523, 1735, 1736, 2775
BmiI	GGNNCC	6 cut(s)	901, 957, 1023, 1255, 1480, 1737
BmrFI	CCNGG	9 cut(s)	36, 159, 765, 988, 1266, 1452, 1821, 2052, 2462
BmrI	ACTGGG	3 cut(s)	330, 1733, 2208
BmtI	GCTAGC	1 cut(s)	875
BmuI	ACTGGG	3 cut(s)	330, 1733, 2208
BpiI	GAAGAC	4 cut(s)	429, 1721, 2139, 2739
BpuEI	CTTGAG	1 cut(s)	2588
BpuMI	CCSGG	1 cut(s)	2462
BsaAI	YACGTR	1 cut(s)	1439
BsaBI	GATNNNNATC	7 cut(s)	330, 336, 1146, 2227, 2696, 2801, 3008
BsaHI	GRCGYC	2 cut(s)	2044, 2966
BsaWI	WCCGGW	1 cut(s)	796
BsaXI	ACNNNNNCTCC	4 cut(s)	1574, 1604, 2142, 2172
Bsc4I	CCNNNNNNNGG	6 cut(s)	398, 1214, 1361, 2410, 3044, 3061
Bse3DI	GCAATG	4 cut(s)	385, 600, 1581, 2997
Bse8I	GATNNNNATC	7 cut(s)	330, 336, 1146, 2227, 2696, 2801, 3008
BseAI	TCCGGA	1 cut(s)	796
BseBI	CCWGG	8 cut(s)	36, 159, 765, 988, 1266, 1452, 1821, 2052
BseJI	GATNNNNATC	7 cut(s)	330, 336, 1146, 2227, 2696, 2801, 3008
BseLI	CCNNNNNNNGG	6 cut(s)	398, 1214, 1361, 2410, 3044, 3061
BseMI	GCAATG	4 cut(s)	385, 600, 1581, 2997
BseMII	CTCAG	6 cut(s)	1281, 1583, 1655, 1878, 2133, 2340
BseRI	GAGGAG	3 cut(s)	283, 325, 2612
BseSI	GKGCMC	2 cut(s)	904, 1739
BseXI	GCAGC	7 cut(s)	190, 509, 919, 1344, 1823, 1929, 2641
BseYI	CCCAGC	3 cut(s)	140, 2026, 2313
Bsh1236I	CGCG	1 cut(s)	2157
BshFI	GGCC	8 cut(s)	391, 469, 920, 1172, 1264, 1481, 1524, 1737
BshNI	GGYRCC	2 cut(s)	899, 955
BsiHKAI	GWGCWC	2 cut(s)	1720, 2059
BsiHKCI	CYCGRG	1 cut(s)	1155
BsiSI	CCGG	2 cut(s)	797, 2462
BslFI	GGGAC	2 cut(s)	1282, 2650
BslI	CCNNNNNNNGG	6 cut(s)	398, 1214, 1361, 2410, 3044, 3061
BsmAI	GTCTC	1 cut(s)	1766
BsmFI	GGGAC	2 cut(s)	1282, 2650
BsmI	GAATGC	4 cut(s)	1294, 1492, 1864, 2258
BsnI	GGCC	8 cut(s)	391, 469, 920, 1172, 1264, 1481, 1524, 1737
BsoBI	CYCGRG	1 cut(s)	1155
Bsp120I	GGGCCC	1 cut(s)	1735
Bsp1286I	GDGCHC	5 cut(s)	904, 1720, 1739, 2059, 2997
Bsp13I	TCCGGA	1 cut(s)	796
Bsp1407I	TGTACA	1 cut(s)	174
Bsp19I	CCATGG	2 cut(s)	461, 921
BspANI	GGCC	8 cut(s)	391, 469, 920, 1172, 1264, 1481, 1524, 1737
BspCNI	CTCAG	6 cut(s)	1282, 1582, 1654, 1877, 2134, 2339
BspEI	TCCGGA	1 cut(s)	796
BspFNI	CGCG	1 cut(s)	2157
BspHI	TCATGA	2 cut(s)	1596, 2805
BspLI	GGNNCC	6 cut(s)	901, 957, 1023, 1255, 1480, 1737
BspMAI	CTGCAG	2 cut(s)	499, 793
BspMI	ACCTGC	1 cut(s)	502
BspOI	GCTAGC	1 cut(s)	875
BspT107I	GGYRCC	2 cut(s)	899, 955
BspTI	CTTAAG	1 cut(s)	1897
BsrBI	CCGCTC	1 cut(s)	229
BsrDI	GCAATG	4 cut(s)	385, 600, 1581, 2997
BsrGI	TGTACA	1 cut(s)	174
BssNI	GRCGYC	2 cut(s)	2044, 2966
BssT1I	CCWWGG	5 cut(s)	393, 461, 921, 1230, 2002
Bst2UI	CCWGG	8 cut(s)	36, 159, 765, 988, 1266, 1452, 1821, 2052
Bst4CI	ACNGT	6 cut(s)	174, 555, 1547, 1693, 2095, 2858
Bst6I	CTCTTC	4 cut(s)	1010, 1917, 2480, 3021
BstACI	GRCGYC	2 cut(s)	2044, 2966
BstAFI	CTTAAG	1 cut(s)	1897
BstAPI	GCANNNNNTGC	2 cut(s)	932, 1836
BstAUI	TGTACA	1 cut(s)	174
BstBAI	YACGTR	1 cut(s)	1439
BstC8I	GCNNGC	7 cut(s)	220, 873, 877, 1716, 2368, 2555, 2559
BstDEI	CTNAG	9 cut(s)	506, 1290, 1299, 1569, 1641, 1864, 1947, 2142, 2326
BstDSI	CCRYGG	3 cut(s)	461, 921, 2263
BstEII	GGTNACC	1 cut(s)	1613
BstFNI	CGCG	1 cut(s)	2157
BstH2I	RGCGCY	1 cut(s)	2468
BstHHI	GCGC	5 cut(s)	2157, 2313, 2467, 2647, 2920
BstMAI	GTCTC	1 cut(s)	1766
BstNI	CCWGG	8 cut(s)	36, 159, 765, 988, 1266, 1452, 1821, 2052
BstNSI	RCATGY	3 cut(s)	977, 1591, 2557
BstPI	GGTNACC	1 cut(s)	1613
BstSCI	CCNGG	9 cut(s)	34, 157, 763, 986, 1264, 1450, 1819, 2050, 2460
BstSFI	CTRYAG	2 cut(s)	495, 789
BstSLI	GKGCMC	2 cut(s)	904, 1739
BstUI	CGCG	1 cut(s)	2157
BstV1I	GCAGC	7 cut(s)	190, 509, 919, 1344, 1823, 1929, 2641
BstV2I	GAAGAC	4 cut(s)	429, 1721, 2139, 2739
BstX2I	RGATCY	3 cut(s)	694, 793, 1021
BstXI	CCANNNNNNTGG	1 cut(s)	1272
BstYI	RGATCY	3 cut(s)	694, 793, 1021
BsuI	GTATCC	1 cut(s)	2937
BsuRI	GGCC	8 cut(s)	391, 469, 920, 1172, 1264, 1481, 1524, 1737
BtgI	CCRYGG	3 cut(s)	461, 921, 2263
BtgZI	GCGATG	1 cut(s)	75
BtsI	GCAGTG	4 cut(s)	786, 819, 1937, 2876
BveI	ACCTGC	1 cut(s)	502
Cac8I	GCNNGC	7 cut(s)	220, 873, 877, 1716, 2368, 2555, 2559
CaiI	CAGNNNCTG	5 cut(s)	932, 1836, 2183, 2308, 2907
CciI	TCATGA	2 cut(s)	1596, 2805
CfoI	GCGC	5 cut(s)	2157, 2313, 2467, 2647, 2920
Cfr13I	GGNCC	6 cut(s)	390, 1479, 1523, 1735, 1736, 2775
CseI	GACGC	2 cut(s)	2052, 2974
CsiI	ACCWGGT	1 cut(s)	2050
Csp6I	GTAC	5 cut(s)	175, 956, 1003, 2128, 2912
CspCI	CAANNNNNGTGG	2 cut(s)	1971, 2006
CviQI	GTAC	5 cut(s)	175, 956, 1003, 2128, 2912
DdeI	CTNAG	9 cut(s)	506, 1290, 1299, 1569, 1641, 1864, 1947, 2142, 2326
DraIII	CACNNNGTG	1 cut(s)	2054
DrdI	GACNNNNNNGTC	1 cut(s)	2719
DseDI	GACNNNNNNGTC	1 cut(s)	2719
EaeI	YGGCCR	1 cut(s)	1262
Eam1104I	CTCTTC	4 cut(s)	1010, 1917, 2480, 3021
EarI	CTCTTC	4 cut(s)	1010, 1917, 2480, 3021
EciI	GGCGGA	2 cut(s)	1400, 3027
Ecl136II	GAGCTC	1 cut(s)	1718
Eco130I	CCWWGG	5 cut(s)	393, 461, 921, 1230, 2002
Eco24I	GRGCYC	3 cut(s)	1720, 1739, 2997
Eco32I	GATATC	2 cut(s)	775, 1408
Eco47I	GGWCC	1 cut(s)	2775
Eco53kI	GAGCTC	1 cut(s)	1718
Eco57I	CTGAAG	5 cut(s)	1650, 1715, 2205, 2648, 2884
Eco72I	CACGTG	1 cut(s)	1439
Eco88I	CYCGRG	1 cut(s)	1155
Eco91I	GGTNACC	1 cut(s)	1613
EcoICRI	GAGCTC	1 cut(s)	1718
EcoO109I	RGGNCCY	1 cut(s)	1735
EcoO65I	GGTNACC	1 cut(s)	1613
EcoRII	CCWGG	8 cut(s)	34, 157, 763, 986, 1264, 1450, 1819, 2050
EcoRV	GATATC	2 cut(s)	775, 1408
EcoT14I	CCWWGG	5 cut(s)	393, 461, 921, 1230, 2002
EcoT22I	ATGCAT	3 cut(s)	2214, 2260, 2555
EcoT38I	GRGCYC	3 cut(s)	1720, 1739, 2997
ErhI	CCWWGG	5 cut(s)	393, 461, 921, 1230, 2002
FaqI	GGGAC	2 cut(s)	1282, 2650
FauI	CCCGC	1 cut(s)	2354
FauNDI	CATATG	1 cut(s)	386
FbaI	TGATCA	3 cut(s)	331, 1459, 2532
FblI	GTMKAC	1 cut(s)	2448
Fnu4HI	GCNGC	8 cut(s)	204, 498, 933, 1358, 1837, 1943, 2655, 2845
FriOI	GRGCYC	3 cut(s)	1720, 1739, 2997
Fsp4HI	GCNGC	8 cut(s)	204, 498, 933, 1358, 1837, 1943, 2655, 2845
FspAI	RTGCGCAY	1 cut(s)	2646
FspI	TGCGCA	1 cut(s)	2646
GlaI	GCGC	5 cut(s)	2156, 2312, 2466, 2646, 2919
GluI	GCNGC	8 cut(s)	204, 498, 933, 1358, 1837, 1943, 2655, 2845
GsaI	CCCAGC	3 cut(s)	144, 2030, 2317
HaeII	RGCGCY	1 cut(s)	2468
HaeIII	GGCC	8 cut(s)	391, 469, 920, 1172, 1264, 1481, 1524, 1737
HapII	CCGG	2 cut(s)	797, 2462
HgaI	GACGC	2 cut(s)	2052, 2974
HhaI	GCGC	5 cut(s)	2157, 2313, 2467, 2647, 2920
Hin1I	GRCGYC	2 cut(s)	2044, 2966
Hin6I	GCGC	5 cut(s)	2155, 2311, 2465, 2645, 2918
HinP1I	GCGC	5 cut(s)	2155, 2311, 2465, 2645, 2918
HincII	GTYRAC	2 cut(s)	291, 1278
HindII	GTYRAC	2 cut(s)	291, 1278
HindIII	AAGCTT	2 cut(s)	1178, 2381
HinfI	GANTC	8 cut(s)	313, 991, 998, 1121, 1225, 1910, 1930, 1979
HpaII	CCGG	2 cut(s)	797, 2462
HphI	GGTGA	9 cut(s)	64, 569, 1339, 1625, 1808, 1919, 2015, 2053, 2824
Hpy166II	GTNNAC	6 cut(s)	291, 786, 971, 1278, 2449, 2815
Hpy8I	GTNNAC	6 cut(s)	291, 786, 971, 1278, 2449, 2815
Hpy99I	CGWCG	2 cut(s)	1137, 1851
HpyAV	CCTTC	6 cut(s)	703, 1062, 1424, 1465, 1674, 3051
HpyCH4III	ACNGT	6 cut(s)	174, 555, 1547, 1693, 2095, 2858
HpyCH4IV	ACGT	5 cut(s)	67, 1078, 1438, 1447, 2508
HpyF3I	CTNAG	9 cut(s)	506, 1290, 1299, 1569, 1641, 1864, 1947, 2142, 2326
HpySE526I	ACGT	5 cut(s)	67, 1078, 1438, 1447, 2508
Hsp92I	GRCGYC	2 cut(s)	2044, 2966
HspAI	GCGC	5 cut(s)	2155, 2311, 2465, 2645, 2918
Kpn2I	TCCGGA	1 cut(s)	796
KpnI	GGTACC	1 cut(s)	959
Ksp22I	TGATCA	3 cut(s)	331, 1459, 2532
LmnI	GCTCC	4 cut(s)	234, 1364, 2278, 2874
Lsp1109I	GCAGC	7 cut(s)	190, 509, 919, 1344, 1823, 1929, 2641
MabI	ACCWGGT	1 cut(s)	2050
MaeII	ACGT	5 cut(s)	67, 1078, 1438, 1447, 2508
MbiI	CCGCTC	1 cut(s)	229
MflI	RGATCY	3 cut(s)	694, 793, 1021
MhlI	GDGCHC	5 cut(s)	904, 1720, 1739, 2059, 2997
MlsI	TGGCCA	1 cut(s)	1264
MluCI	AATT	9 cut(s)	30, 446, 482, 716, 1983, 2618, 2747, 2883, 3057
MluNI	TGGCCA	1 cut(s)	1264
MlyI	GAGTC	1 cut(s)	322
MmeI	TCCRAC	1 cut(s)	1729
Mox20I	TGGCCA	1 cut(s)	1264
Mph1103I	ATGCAT	3 cut(s)	2214, 2260, 2555
MroI	TCCGGA	1 cut(s)	796
MscI	TGGCCA	1 cut(s)	1264
MseI	TTAA	9 cut(s)	485, 699, 908, 1107, 1334, 1898, 2574, 2819, 2882
MslI	CAYNNNNRTG	2 cut(s)	2375, 2810
Msp20I	TGGCCA	1 cut(s)	1264
MspA1I	CMGCKG	3 cut(s)	500, 1357, 2030
MspCI	CTTAAG	1 cut(s)	1897
MspI	CCGG	2 cut(s)	797, 2462
MspR9I	CCNGG	9 cut(s)	36, 159, 765, 988, 1266, 1452, 1821, 2052, 2462
Mva1269I	GAATGC	4 cut(s)	1294, 1492, 1864, 2258
MvaI	CCWGG	8 cut(s)	36, 159, 765, 988, 1266, 1452, 1821, 2052
MvnI	CGCG	1 cut(s)	2157
NciI	CCSGG	1 cut(s)	2462
NcoI	CCATGG	2 cut(s)	461, 921
NdeI	CATATG	1 cut(s)	386
NheI	GCTAGC	1 cut(s)	871
NlaIV	GGNNCC	6 cut(s)	901, 957, 1023, 1255, 1480, 1737
NmuCI	GTSAC	9 cut(s)	95, 817, 1304, 1434, 1547, 1613, 1935, 2194, 2242
NsbI	TGCGCA	1 cut(s)	2646
NsiI	ATGCAT	3 cut(s)	2214, 2260, 2555
NspI	RCATGY	3 cut(s)	977, 1591, 2557
PaeI	GCATGC	1 cut(s)	2557
PagI	TCATGA	2 cut(s)	1596, 2805
PcsI	WCGNNNNNNNCGW	1 cut(s)	1444
PctI	GAATGC	4 cut(s)	1294, 1492, 1864, 2258
PfeI	GAWTC	7 cut(s)	991, 998, 1121, 1225, 1910, 1930, 1979
PflFI	GACNNNGTC	2 cut(s)	428, 1052
PkrI	GCNGC	8 cut(s)	205, 499, 934, 1359, 1838, 1944, 2656, 2846
PleI	GAGTC	1 cut(s)	321
PmaCI	CACGTG	1 cut(s)	1439
PmlI	CACGTG	1 cut(s)	1439
PpsI	GAGTC	1 cut(s)	321
Ppu21I	YACGTR	1 cut(s)	1439
PshBI	ATTAAT	1 cut(s)	1107
Psp124BI	GAGCTC	1 cut(s)	1720
Psp1406I	AACGTT	1 cut(s)	2508
Psp6I	CCWGG	8 cut(s)	34, 157, 763, 986, 1264, 1450, 1819, 2050
PspCI	CACGTG	1 cut(s)	1439
PspEI	GGTNACC	1 cut(s)	1613
PspFI	CCCAGC	3 cut(s)	140, 2026, 2313
PspGI	CCWGG	8 cut(s)	34, 157, 763, 986, 1264, 1450, 1819, 2050
PspN4I	GGNNCC	6 cut(s)	901, 957, 1023, 1255, 1480, 1737
PspOMI	GGGCCC	1 cut(s)	1735
PspPI	GGNCC	6 cut(s)	390, 1479, 1523, 1735, 1736, 2775
PstI	CTGCAG	2 cut(s)	499, 793
PstNI	CAGNNNCTG	5 cut(s)	932, 1836, 2183, 2308, 2907
PsuI	RGATCY	3 cut(s)	694, 793, 1021
PsyI	GACNNNGTC	2 cut(s)	428, 1052
PvuII	CAGCTG	2 cut(s)	500, 2030
RsaI	GTAC	5 cut(s)	176, 957, 1004, 2129, 2913
RsaNI	GTAC	5 cut(s)	175, 956, 1003, 2128, 2912
RseI	CAYNNNNRTG	2 cut(s)	2375, 2810
SacI	GAGCTC	1 cut(s)	1720
SaqAI	TTAA	9 cut(s)	485, 699, 908, 1107, 1334, 1898, 2574, 2819, 2882
SatI	GCNGC	8 cut(s)	204, 498, 933, 1358, 1837, 1943, 2655, 2845
Sau96I	GGNCC	6 cut(s)	390, 1479, 1523, 1735, 1736, 2775
SchI	GAGTC	1 cut(s)	322
ScrFI	CCNGG	9 cut(s)	36, 159, 765, 988, 1266, 1452, 1821, 2052, 2462
SduI	GDGCHC	5 cut(s)	904, 1720, 1739, 2059, 2997
SexAI	ACCWGGT	1 cut(s)	2050
SfcI	CTRYAG	2 cut(s)	495, 789
SinI	GGWCC	1 cut(s)	2775
SmiMI	CAYNNNNRTG	2 cut(s)	2375, 2810
SmlI	CTYRAG	2 cut(s)	1897, 2567
SmoI	CTYRAG	2 cut(s)	1897, 2567
SpeI	ACTAGT	1 cut(s)	2639
SphI	GCATGC	1 cut(s)	2557
Sse9I	AATT	9 cut(s)	30, 446, 482, 716, 1983, 2618, 2747, 2883, 3057
SstI	GAGCTC	1 cut(s)	1720
StyD4I	CCNGG	9 cut(s)	34, 157, 763, 986, 1264, 1450, 1819, 2050, 2460
StyI	CCWWGG	5 cut(s)	393, 461, 921, 1230, 2002
TaaI	ACNGT	6 cut(s)	174, 555, 1547, 1693, 2095, 2858
TaiI	ACGT	5 cut(s)	70, 1081, 1441, 1450, 2511
TaqI	TCGA	9 cut(s)	689, 1063, 1389, 1498, 1542, 1659, 1791, 2589, 2694
TaqII	GACCGA	2 cut(s)	1686, 1791
TasI	AATT	9 cut(s)	30, 446, 482, 716, 1983, 2618, 2747, 2883, 3057
TatI	WGTACW	1 cut(s)	174
TauI	GCSGC	1 cut(s)	2847
TfiI	GAWTC	7 cut(s)	991, 998, 1121, 1225, 1910, 1930, 1979
Tru1I	TTAA	9 cut(s)	485, 699, 908, 1107, 1334, 1898, 2574, 2819, 2882
Tru9I	TTAA	9 cut(s)	485, 699, 908, 1107, 1334, 1898, 2574, 2819, 2882
TseFI	GTSAC	9 cut(s)	95, 817, 1304, 1434, 1547, 1613, 1935, 2194, 2242
TseI	GCWGC	7 cut(s)	203, 497, 932, 1357, 1836, 1942, 2654
Tsp45I	GTSAC	9 cut(s)	95, 817, 1304, 1434, 1547, 1613, 1935, 2194, 2242
TspGWI	ACGGA	4 cut(s)	493, 2187, 2252, 2919
Tth111I	GACNNNGTC	2 cut(s)	428, 1052
Vha464I	CTTAAG	1 cut(s)	1897
VpaK11BI	GGWCC	1 cut(s)	2775
VspI	ATTAAT	1 cut(s)	1107
XapI	RAATTY	2 cut(s)	716, 2747
XceI	RCATGY	3 cut(s)	977, 1591, 2557
XmiI	GTMKAC	1 cut(s)	2448
Zsp2I	ATGCAT	3 cut(s)	2214, 2260, 2555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.