Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0009767

Physical Location & Seq

Genomic Coordinates Reverse (-)

66539658 .. 66543863

Gene Structure 4206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG462200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3474 bp

ATGGCTTCCAAATCGTTCAAGGGGAGGCTATCAAATCTATCATCGAGCTCTGACATTCCCGATGGACTCGGCAAGCCTCCAATGCCTCCCACCGTCACATTTGGCCGCAGAACCTCCTCCGGTCGCTACATCAGCTACTCCAGGGATGATCTCGATAGCGAAATTGGGAGTGGTGACTTTATGAACTACACAGTGCACATACCTCCCACCCCAGACAACCAACCCATGGATCCATCCATTTCGCAGAAGGTTGAGGAGCAGTATGTGTCCAACTCGCTTTTCACAGGGGGATTCAACAGTGTTACCCGAGCTCATCTTATGGACAAGGTGATTGAATCCGAAACCAGCCATCCTCAGATGGCCGGTGCTAAAGGGTCATCATGTGCAATTCCCGGGTGTGATGCAAAGGTCATGAGCGATCAACGCGGGGAGGACATTCTTCCTTGTGAGTGTGATTTCAAGATATGTCGAGATTGCTATACTGATGCTGTCAAAACTGGGGGTGGTGTATGTCCCGGATGCAAGGAACAGTACAAGAACACAGATTTGGATGAAATGGCTATGGAGGGTGCATTGCCACCGCTTCCGCTGCCTTTGCCTAATGGGATGTCTAAAATGGATAGTGGGATGTCTAGAATGGAGAGGAGGTTGTCACTCATGAAGTCAACAAAGTCGGGTCTGATGAGGAGTCAAACTGGTGATTTTGATCACAACCGGTGGCTGTTTGAAACAAAGGGAACTTATGGCTATGGGAATGCTATATGGCCCAAGGAAGGAGGTTTTGGAAATGGCAAAGACGATGATGTCGTTGAGCCAACTGAGCTGATGAACAAACCATGGAGGCCTCTCACACGGAAATTAAAGATACCTGCAGCTATTCTAAGCCCCTATAGGCTTCTAATATTTGTCCGCATGGTTGTCCTTGGGCTGTTTTTGGCATGGAGGATCAGCAATCCAAATACTGATGCAATGTGGCTTTGGGGAATGTCAATAGTTTGTGAGGTCTGGTTTGCTTTTTCGTGGCTTCTCGATCAACTTCCCAAGTTGTGCCCAATCAATCGTTCTACAGATCTTAATGTCTTGAAGGAGAAATTTGAAACACCTACTCTCAGCAACCCCACCGGGAAATCTGATCTTCCAGGCATAGATATCTTTGTGTCCACTGCAGATCCAGATAAAGAACCACCACTTGTTACAGCAAACACTATCTTATCTATTCTAGCTACTGATTACCCTGTTGAAAAGCTTGCTTGCTATGTTTCTGATGATGGAGGTGCACTTTTAACCTTTGAGGCCATGGCAGAAGCAGCAAGTTTTGCTAATATATGGGTTCCCTTCTGCCGTAAACATGGTATTGAGCCCAGGAATCCTGAATCTTACTTCAGTTTGAAGAGGGATCCATACAAGAACAAAGTGAAATCTGACTTTGTGAAGGATCGTAGAAGGGTGAAACGTGAATATGACGAGTTCAAGGTTCGGATTAATGGACTGCCTGAGTCTATACGTCGCCGATCAGATGCTTATCATGCCAGGGAGGAAATCAAGGCCATGAAGCTTCAAAGACAGAACAGAGAGGATGAACCTGTGGAGACTGTGAAGATTCCCAAAGCAACTTGGATGGCTGATGGAACCCACTGGCCTGGGACTTGGTTGACCTCTTCATCCGAGCATTCTAGGAGTGACCATGCTGGTATTATACAGGTGATGTTAAAACCCCCTAGTGAGGAACCACTGCATGGAACTGATGGAACTATAGATGAAGCTAGACTCATCGACCTCACTGATATTGATATCCGCCTTCCCATGCTTGTTTATGTGTCTCGTGAAAAGCGGCCAGGCTATGATCACAACAAGAAGGCAGGGGCCATGAATGCTCTTGTTCGAGCCTCTGCTATAATGTCCAATGGCCCATTCATTCTCAACCTTGACTGTGATCATTATATCTACAATTCTCAGGCAATGAGGGAAGGTATGTGCTTCATGATGGATCGCGGAGGTGACCGGCTCTGTTATGTTCAGTTCCCACAGAGATTTGAGGGTATTGACCCTTCGGATCGATATGCCAACCACAACACAGTTTTCTTTGATGTCAATATGCGGGCTCTTGATGGTCTCCAGGGCCCAGTTTATGTCGGAACTGGATGTCTATTTCGAAGAATTGCCCTGTATGGTTTTGACCCACCTCGATCAAAAGAACATCACCAAGGTTGTTGCAGTTGCTGCTTTTCTAGTCGTAAAAAGAATAAGCATGCCTCAGTAGCGCACACCCCTGAAGAAAACCGAGCCTTGAGAATGGGTGATTCTGATGATGAAGAGATGAATCTCTCCCTGCTGCCGAAGAGGTTTGGGAACTCAACTTTCCTCATTGACTCAATTCCAGTGGCAGAGTACCAAGGTCGCCCTCTTGCAGATCACCCAGCTGTAAAGAATGGACGCCCACCCGGTGCTCTCACCATTCCTCGTGAGCTGCTTGATGCATCAACTGTTGCAGAGGCTATCAGTGTCATTTCCTGCTGGTATGAAGACAAGACTGAGTGGGGAGATCGTGTCGGATGGATTTACGGTTCAGTTACTGAAGATGTGGTCACTGGTTACAGAATGCACAACAGAGGATGGAAATCTGTTTACTGTGTGACCAAACGTGATGCATTTCGTGGAACTGCACCTATCAATCTCACTGATAGGTTGCATCAAGTCCTCCGTTGGGCTACAGGCTCAGTTGAAATCTTTTTCTCCCGCAACAATGCCCTGCTAGCCAGCCCGAGAATGAAGATTCTGCAAAGAGTAGCATATCTCAACGTTGGTATCTACCCTTTCACATCCATCTTCCTTATCGTCTACTGCTTCCTCCCTGCACTTTCGCTCTTCTCTGGTCAGTTCATTGTGCAGTCCCTCAATGTTACTTTCCTGACCTATCTTTTGGTCATTACTCTCACCTTATGTATGCTTGCCATACTTGAGATCAAATGGTCTGGCATTGAACTAGAAGAGTGGTGGAGAAATGAGCAGTTTTGGTTGATTGGAGGGACCAGTGCTCACCTTGCTGCTGTGATTCAGGGGCTATTAAAAGTTATTGCAGGGATTGAAATCTCTTTCACCTTGACTTCAAAATCAGGTGGTGACGATGAGGATGATGACTTTGCTGATCTCTACATTGTGAAATGGACATCTCTGATGATACCCCCAATAACAATCATGATGGTCAACTTAATTGCAATAGCAGTTGGGTTCAGCAGAACAATATACAGCGTGATTCCGCAGTGGAGCCGATTGATTGGAGGTGTTTTCTTCAGTTTCTGGGTTTTAGCACATCTATACCCATTTGCCAAAGGATTGATGGGGAGACGAGGGAGGACACCCACCATTGTTTTTGTATGGTCAGGACTCATTGCAATCACCATCTCTCTTCTTTGGGTGGCAATCAATCCCCCTGCTGGTACAAACCAAATTGGAGGATCATTCGAATTCCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0000139 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005802 GO:0005886 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016021 GO:0016049 GO:0016740 GO:0016757 GO:0016758 GO:0019187 GO:0021700 GO:0022622 GO:0030154 GO:0030173 GO:0031090 GO:0031224 GO:0031228 GO:0031300 GO:0031301 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0051753 GO:0060560 GO:0070085 GO:0071554 GO:0071669 GO:0071695 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0097502 GO:0097708 GO:0098588 GO:0098791 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-RING_4

Protein Analysis

1157

Amino Acids

129.71

Weight (kDa)

6.65

Isoelectric Point (pI)

41.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_4	PF14570	130 - 179	6.3e-18	RING/Ubox like zinc-binding domain
Cellulose_synt	PF03552	382 - 1147	0.0	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0009767)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03050 AT5G16910
fragaria_vesca	FvH4_7g34010 FvH4_7g34010 FvH4_7g34010
malus_domestica	MD01G1236500.v1.1 MD07G1309200.v1.1
prunus_persica	Prupe.2G326600_v2.0.a1 Prupe.2G326600_v2.0.a1 Prupe.2G326600_v2.0.a1 Prupe.2G326600_v2.0.a1 Prupe.2G326600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0384261
rosa_laevigata	RLG00000026053
rosa_multiflora	Rmu_sc0011271.1_g000003
rosa_rugosa	Rorug01G0446300
rosa_samantha	Rh1AG471800 Rh1BG429500 Rh1CG442100 Rh1DG462200
rosa_wichuraiana	Rw1G040080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	803
Acc36I	ACCTGC	1 cut(s)	877
AccB7I	CCANNNNNTGG	2 cut(s)	226, 1736
AccI	GTMKAC	1 cut(s)	2838
AccII	CGCG	2 cut(s)	426, 1992
AclI	AACGTT	1 cut(s)	2799
AcoI	YGGCCR	3 cut(s)	103, 360, 1832
AcsI	RAATTY	2 cut(s)	1091, 3464
AcuI	CTGAAG	4 cut(s)	1366, 2292, 2595, 3274
AcyI	GRCGYC	1 cut(s)	2434
AdeI	CACNNNGTG	1 cut(s)	2444
AfaI	GTAC	3 cut(s)	533, 2390, 3439
AfiI	CCNNNNNNNGG	6 cut(s)	226, 773, 1723, 1736, 2704, 3434
AgeI	ACCGGT	1 cut(s)	714
AjnI	CCWGG	7 cut(s)	140, 1138, 1361, 1529, 1639, 1834, 2115
AloI	GAACNNNNNNTCC	2 cut(s)	2548, 2580
Alw21I	GWGCWC	6 cut(s)	50, 198, 313, 1279, 2449, 3037
Alw26I	GTCTC	4 cut(s)	1583, 1824, 2117, 3337
Alw44I	GTGCAC	2 cut(s)	194, 1275
AlwNI	CAGNNNCTG	3 cut(s)	2220, 2573, 3297
Ama87I	CYCGRG	3 cut(s)	306, 392, 2761
ApaI	GGGCCC	1 cut(s)	2123
ApaLI	GTGCAC	2 cut(s)	194, 1275
ApeKI	GCWGC	7 cut(s)	589, 872, 1307, 2220, 2332, 2467, 3044
ApoI	RAATTY	2 cut(s)	1091, 3464
ArsI	GACNNNNNNTTYG	2 cut(s)	2902, 2934
AseI	ATTAAT	1 cut(s)	1482
AsiGI	ACCGGT	1 cut(s)	714
AspLEI	GCGC	1 cut(s)	2263
AspS9I	GGNCC	6 cut(s)	765, 1863, 1907, 2119, 2120, 3027
AsuC2I	CCSGG	5 cut(s)	393, 394, 516, 1123, 2442
AsuII	TTCGAA	2 cut(s)	2152, 3462
AsuNHI	GCTAGC	1 cut(s)	2752
AvaI	CYCGRG	3 cut(s)	306, 392, 2761
AvaII	GGWCC	1 cut(s)	3027
BaeGI	GKGCMC	4 cut(s)	198, 1052, 1279, 2123
BaeI	ACNNNNGTAYC	2 cut(s)	2788, 2821
BamHI	GGATCC	2 cut(s)	229, 1396
BanII	GRGCYC	5 cut(s)	50, 313, 1362, 2104, 2123
BarI	GAAGNNNNNNTAC	2 cut(s)	2032, 2064
BauI	CACGAG	2 cut(s)	1821, 2460
BbsI	GAAGAC	1 cut(s)	2529
Bbv12I	GWGCWC	6 cut(s)	50, 198, 313, 1279, 2449, 3037
BbvI	GCAGC	7 cut(s)	576, 884, 1319, 2207, 2319, 2454, 3031
BceAI	ACGGC	1 cut(s)	1326
BciT130I	CCWGG	7 cut(s)	142, 1140, 1363, 1531, 1641, 1836, 2117
BclI	TGATCA	3 cut(s)	706, 1843, 1933
BcnI	CCSGG	5 cut(s)	393, 394, 516, 1123, 2442
BcoDI	GTCTC	4 cut(s)	1583, 1824, 2117, 3337
BfaI	CTAG	8 cut(s)	633, 1220, 1674, 1719, 1764, 2229, 2753, 2984
BfmI	CTRYAG	6 cut(s)	870, 889, 1065, 1164, 1752, 2709
BfuAI	ACCTGC	1 cut(s)	877
BglII	AGATCT	1 cut(s)	1069
BisI	GCNGC	9 cut(s)	106, 590, 873, 1308, 1832, 2221, 2333, 2468, 3045
BlsI	GCNGC	9 cut(s)	107, 591, 874, 1309, 1833, 2222, 2334, 2469, 3046
Bme18I	GGWCC	1 cut(s)	3027
BmeT110I	CYCGRG	3 cut(s)	306, 392, 2761
BmgT120I	GGNCC	6 cut(s)	765, 1863, 1907, 2119, 2120, 3027
BmiI	GGNNCC	9 cut(s)	231, 1332, 1398, 1630, 1728, 1864, 2121, 3028, 3266
BmrI	ACTGGG	2 cut(s)	507, 2117
BmsI	GCATC	9 cut(s)	391, 475, 509, 955, 1507, 2464, 2486, 2635, 2698
BmtI	GCTAGC	1 cut(s)	2756
BmuI	ACTGGG	2 cut(s)	507, 2117
BpiI	GAAGAC	1 cut(s)	2529
BpmI	CTGGAG	2 cut(s)	124, 2099
Bpu14I	TTCGAA	2 cut(s)	2152, 3462
BpuEI	CTTGAG	2 cut(s)	2308, 2978
BpuMI	CCSGG	5 cut(s)	393, 394, 516, 1123, 2442
Bsa29I	ATCGAT	1 cut(s)	2056
BsaBI	GATNNNNATC	4 cut(s)	705, 1521, 2617, 3086
BsaHI	GRCGYC	1 cut(s)	2434
BsaI	GGTCTC	1 cut(s)	2117
BsaWI	WCCGGW	2 cut(s)	119, 714
BsaXI	ACNNNNNCTCC	4 cut(s)	632, 662, 2532, 2562
Bsc4I	CCNNNNNNNGG	6 cut(s)	226, 773, 1723, 1736, 2704, 3434
Bse118I	RCCGGY	3 cut(s)	362, 714, 2001
Bse1I	ACTGG	8 cut(s)	502, 700, 1640, 2123, 2143, 2378, 2593, 3030
Bse3DI	GCAATG	4 cut(s)	572, 975, 1965, 3387
Bse8I	GATNNNNATC	4 cut(s)	705, 1521, 2617, 3086
BseBI	CCWGG	7 cut(s)	142, 1140, 1363, 1531, 1641, 1836, 2117
BseCI	ATCGAT	1 cut(s)	2056
BseJI	GATNNNNATC	4 cut(s)	705, 1521, 2617, 3086
BseLI	CCNNNNNNNGG	6 cut(s)	226, 773, 1723, 1736, 2704, 3434
BseMI	GCAATG	4 cut(s)	572, 975, 1965, 3387
BseMII	CTCAG	8 cut(s)	368, 810, 1123, 1485, 1967, 2268, 2523, 2730
BseNI	ACTGG	8 cut(s)	502, 700, 1640, 2123, 2143, 2378, 2593, 3030
BseRI	GAGGAG	4 cut(s)	106, 269, 658, 700
BseSI	GKGCMC	4 cut(s)	198, 1052, 1279, 2123
BseXI	GCAGC	7 cut(s)	576, 884, 1319, 2207, 2319, 2454, 3031
BseYI	CCCAGC	1 cut(s)	2416
BsgI	GTGCAG	3 cut(s)	2646, 2838, 2906
Bsh1236I	CGCG	2 cut(s)	426, 1992
Bsh1285I	CGRYCG	1 cut(s)	124
BshTI	ACCGGT	1 cut(s)	714
BshVI	ATCGAT	1 cut(s)	2056
BsiEI	CGRYCG	1 cut(s)	124
BsiHKAI	GWGCWC	6 cut(s)	50, 198, 313, 1279, 2449, 3037
BsiHKCI	CYCGRG	3 cut(s)	306, 392, 2761
BsiSI	CCGG	8 cut(s)	120, 363, 393, 516, 715, 1122, 2002, 2442
BslFI	GGGAC	4 cut(s)	498, 1657, 2875, 3040
BslI	CCNNNNNNNGG	6 cut(s)	226, 773, 1723, 1736, 2704, 3434
BsmAI	GTCTC	4 cut(s)	1583, 1824, 2117, 3337
BsmBI	CGTCTC	1 cut(s)	3337
BsmFI	GGGAC	4 cut(s)	498, 1657, 2875, 3040
BsmI	GAATGC	4 cut(s)	760, 1669, 1876, 2604
Bso31I	GGTCTC	1 cut(s)	2117
BsoBI	CYCGRG	3 cut(s)	306, 392, 2761
Bsp119I	TTCGAA	2 cut(s)	2152, 3462
Bsp120I	GGGCCC	1 cut(s)	2119
Bsp19I	CCATGG	3 cut(s)	225, 836, 1296
BspCNI	CTCAG	8 cut(s)	367, 811, 1122, 1486, 1966, 2267, 2524, 2729
BspDI	ATCGAT	1 cut(s)	2056
BspFNI	CGCG	2 cut(s)	426, 1992
BspHI	TCATGA	4 cut(s)	411, 657, 1980, 3195
BspLI	GGNNCC	9 cut(s)	231, 1332, 1398, 1630, 1728, 1864, 2121, 3028, 3266
BspMAI	CTGCAG	2 cut(s)	874, 1168
BspMI	ACCTGC	1 cut(s)	877
BspOI	GCTAGC	1 cut(s)	2756
BspQI	GCTCTTC	1 cut(s)	2870
BspT104I	TTCGAA	2 cut(s)	2152, 3462
BspTNI	GGTCTC	1 cut(s)	2117
BsrDI	GCAATG	4 cut(s)	572, 975, 1965, 3387
BsrFI	RCCGGY	3 cut(s)	362, 714, 2001
BsrI	ACTGG	8 cut(s)	502, 700, 1640, 2123, 2143, 2378, 2593, 3030
BssAI	RCCGGY	3 cut(s)	362, 714, 2001
BssNI	GRCGYC	1 cut(s)	2434
BssSI	CACGAG	2 cut(s)	1821, 2460
BssT1I	CCWWGG	7 cut(s)	225, 768, 836, 922, 1296, 2203, 2392
Bst2BI	CACGAG	2 cut(s)	1821, 2460
Bst2UI	CCWGG	7 cut(s)	142, 1140, 1363, 1531, 1641, 1836, 2117
Bst6I	CTCTTC	7 cut(s)	1385, 1663, 2307, 2333, 2870, 2982, 3411
BstACI	GRCGYC	1 cut(s)	2434
BstAPI	GCANNNNNTGC	2 cut(s)	1316, 2220
BstBI	TTCGAA	2 cut(s)	2152, 3462
BstC8I	GCNNGC	8 cut(s)	74, 1248, 1252, 2100, 2250, 2754, 2758, 2949
BstDEI	CTNAG	9 cut(s)	354, 819, 881, 1109, 1494, 1953, 2254, 2532, 2716
BstDSI	CCRYGG	3 cut(s)	225, 836, 1296
BstEII	GGTNACC	1 cut(s)	1997
BstFNI	CGCG	2 cut(s)	426, 1992
BstHHI	GCGC	1 cut(s)	2263
BstMAI	GTCTC	4 cut(s)	1583, 1824, 2117, 3337
BstMCI	CGRYCG	1 cut(s)	124
BstNI	CCWGG	7 cut(s)	142, 1140, 1363, 1531, 1641, 1836, 2117
BstNSI	RCATGY	1 cut(s)	2252
BstPI	GGTNACC	1 cut(s)	1997
BstSFI	CTRYAG	6 cut(s)	870, 889, 1065, 1164, 1752, 2709
BstSLI	GKGCMC	4 cut(s)	198, 1052, 1279, 2123
BstUI	CGCG	2 cut(s)	426, 1992
BstV1I	GCAGC	7 cut(s)	576, 884, 1319, 2207, 2319, 2454, 3031
BstV2I	GAAGAC	1 cut(s)	2529
BstX2I	RGATCY	4 cut(s)	229, 1069, 1168, 1396
BstXI	CCANNNNNNTGG	1 cut(s)	1640
BstYI	RGATCY	4 cut(s)	229, 1069, 1168, 1396
Bsu15I	ATCGAT	1 cut(s)	2056
BsuTUI	ATCGAT	1 cut(s)	2056
BtgI	CCRYGG	3 cut(s)	225, 836, 1296
BtsI	GCAGTG	3 cut(s)	1161, 1730, 3266
BveI	ACCTGC	1 cut(s)	877
Cac8I	GCNNGC	8 cut(s)	74, 1248, 1252, 2100, 2250, 2754, 2758, 2949
CaiI	CAGNNNCTG	3 cut(s)	2220, 2573, 3297
CciI	TCATGA	4 cut(s)	411, 657, 1980, 3195
CfoI	GCGC	1 cut(s)	2263
Cfr10I	RCCGGY	3 cut(s)	362, 714, 2001
Cfr13I	GGNCC	6 cut(s)	765, 1863, 1907, 2119, 2120, 3027
Cfr9I	CCCGGG	1 cut(s)	392
ClaI	ATCGAT	1 cut(s)	2056
CseI	GACGC	1 cut(s)	2442
Csp6I	GTAC	3 cut(s)	532, 2389, 3438
CspAI	ACCGGT	1 cut(s)	714
CspCI	CAANNNNNGTGG	2 cut(s)	2361, 2396
CviQI	GTAC	3 cut(s)	532, 2389, 3438
DdeI	CTNAG	9 cut(s)	354, 819, 881, 1109, 1494, 1953, 2254, 2532, 2716
DraIII	CACNNNGTG	1 cut(s)	2444
DrdI	GACNNNNNNGTC	1 cut(s)	803
DseDI	GACNNNNNNGTC	1 cut(s)	803
EaeI	YGGCCR	3 cut(s)	103, 360, 1832
Eam1104I	CTCTTC	7 cut(s)	1385, 1663, 2307, 2333, 2870, 2982, 3411
EarI	CTCTTC	7 cut(s)	1385, 1663, 2307, 2333, 2870, 2982, 3411
EciI	GGCGGA	1 cut(s)	1784
Ecl136II	GAGCTC	2 cut(s)	48, 311
Eco130I	CCWWGG	7 cut(s)	225, 768, 836, 922, 1296, 2203, 2392
Eco147I	AGGCCT	1 cut(s)	844
Eco24I	GRGCYC	5 cut(s)	50, 313, 1362, 2104, 2123
Eco31I	GGTCTC	1 cut(s)	2117
Eco32I	GATATC	2 cut(s)	1150, 1792
Eco47I	GGWCC	1 cut(s)	3027
Eco53kI	GAGCTC	2 cut(s)	48, 311
Eco57I	CTGAAG	4 cut(s)	1366, 2292, 2595, 3274
Eco88I	CYCGRG	3 cut(s)	306, 392, 2761
Eco91I	GGTNACC	1 cut(s)	1997
EcoICRI	GAGCTC	2 cut(s)	48, 311
EcoO109I	RGGNCCY	1 cut(s)	2119
EcoO65I	GGTNACC	1 cut(s)	1997
EcoRI	GAATTC	1 cut(s)	3464
EcoRII	CCWGG	7 cut(s)	140, 1138, 1361, 1529, 1639, 1834, 2115
EcoRV	GATATC	2 cut(s)	1150, 1792
EcoT14I	CCWWGG	7 cut(s)	225, 768, 836, 922, 1296, 2203, 2392
EcoT22I	ATGCAT	2 cut(s)	2479, 2650
EcoT38I	GRGCYC	5 cut(s)	50, 313, 1362, 2104, 2123
ErhI	CCWWGG	7 cut(s)	225, 768, 836, 922, 1296, 2203, 2392
Esp3I	CGTCTC	1 cut(s)	3337
FaqI	GGGAC	4 cut(s)	498, 1657, 2875, 3040
FauI	CCCGC	3 cut(s)	419, 2091, 2744
FbaI	TGATCA	3 cut(s)	706, 1843, 1933
FblI	GTMKAC	1 cut(s)	2838
Fnu4HI	GCNGC	9 cut(s)	106, 590, 873, 1308, 1832, 2221, 2333, 2468, 3045
FriOI	GRGCYC	5 cut(s)	50, 313, 1362, 2104, 2123
Fsp4HI	GCNGC	9 cut(s)	106, 590, 873, 1308, 1832, 2221, 2333, 2468, 3045
FspBI	CTAG	8 cut(s)	633, 1220, 1674, 1719, 1764, 2229, 2753, 2984
GlaI	GCGC	1 cut(s)	2262
GluI	GCNGC	9 cut(s)	106, 590, 873, 1308, 1832, 2221, 2333, 2468, 3045
GsaI	CCCAGC	1 cut(s)	2420
GsuI	CTGGAG	2 cut(s)	124, 2099
HapII	CCGG	8 cut(s)	120, 363, 393, 516, 715, 1122, 2002, 2442
HgaI	GACGC	1 cut(s)	2442
HhaI	GCGC	1 cut(s)	2263
Hin1I	GRCGYC	1 cut(s)	2434
Hin6I	GCGC	1 cut(s)	2261
HinP1I	GCGC	1 cut(s)	2261
HincII	GTYRAC	3 cut(s)	666, 1653, 3205
HindII	GTYRAC	3 cut(s)	666, 1653, 3205
HindIII	AAGCTT	2 cut(s)	1244, 1553
HpaII	CCGG	8 cut(s)	120, 363, 393, 516, 715, 1122, 2002, 2442
Hpy166II	GTNNAC	9 cut(s)	196, 666, 1161, 1277, 1346, 1653, 2626, 2839, 3205
Hpy8I	GTNNAC	9 cut(s)	196, 666, 1161, 1277, 1346, 1653, 2626, 2839, 3205
Hpy99I	CGWCG	1 cut(s)	1509
HpyCH4IV	ACGT	4 cut(s)	1453, 1504, 2641, 2799
HpyF3I	CTNAG	9 cut(s)	354, 819, 881, 1109, 1494, 1953, 2254, 2532, 2716
HpySE526I	ACGT	4 cut(s)	1453, 1504, 2641, 2799
Hsp92I	GRCGYC	1 cut(s)	2434
HspAI	GCGC	1 cut(s)	2261
Ksp22I	TGATCA	3 cut(s)	706, 1843, 1933
LguI	GCTCTTC	1 cut(s)	2870
LmnI	GCTCC	2 cut(s)	256, 3264
Lsp1109I	GCAGC	7 cut(s)	576, 884, 1319, 2207, 2319, 2454, 3031
LweI	GCATC	9 cut(s)	391, 475, 509, 955, 1507, 2464, 2486, 2635, 2698
MaeI	CTAG	8 cut(s)	633, 1220, 1674, 1719, 1764, 2229, 2753, 2984
MaeII	ACGT	4 cut(s)	1453, 1504, 2641, 2799
MflI	RGATCY	4 cut(s)	229, 1069, 1168, 1396
MlyI	GAGTC	6 cut(s)	60, 697, 1505, 1761, 2363, 3378
MmeI	TCCRAC	3 cut(s)	294, 2113, 2530
Mph1103I	ATGCAT	2 cut(s)	2479, 2650
MseI	TTAA	7 cut(s)	860, 1074, 1283, 1482, 1709, 3065, 3209
MspA1I	CMGCKG	2 cut(s)	589, 2420
MspI	CCGG	8 cut(s)	120, 363, 393, 516, 715, 1122, 2002, 2442
Mva1269I	GAATGC	4 cut(s)	760, 1669, 1876, 2604
MvaI	CCWGG	7 cut(s)	142, 1140, 1363, 1531, 1641, 1836, 2117
MvnI	CGCG	2 cut(s)	426, 1992
NciI	CCSGG	5 cut(s)	393, 394, 516, 1123, 2442
NcoI	CCATGG	3 cut(s)	225, 836, 1296
NheI	GCTAGC	1 cut(s)	2752
NlaIV	GGNNCC	9 cut(s)	231, 1332, 1398, 1630, 1728, 1864, 2121, 3028, 3266
NmeAIII	GCCGAG	1 cut(s)	48
NmuCI	GTSAC	8 cut(s)	94, 173, 651, 1679, 1997, 2584, 2632, 3119
NsiI	ATGCAT	2 cut(s)	2479, 2650
NspI	RCATGY	1 cut(s)	2252
NspV	TTCGAA	2 cut(s)	2152, 3462
PaeI	GCATGC	1 cut(s)	2252
PagI	TCATGA	4 cut(s)	411, 657, 1980, 3195
PceI	AGGCCT	1 cut(s)	844
PciSI	GCTCTTC	1 cut(s)	2870
PcsI	WCGNNNNNNNCGW	1 cut(s)	804
PctI	GAATGC	4 cut(s)	760, 1669, 1876, 2604
PflMI	CCANNNNNTGG	2 cut(s)	226, 1736
PfoI	TCCNGGA	1 cut(s)	514
PinAI	ACCGGT	1 cut(s)	714
PkrI	GCNGC	9 cut(s)	107, 591, 874, 1309, 1833, 2222, 2334, 2469, 3046
PleI	GAGTC	6 cut(s)	60, 696, 1504, 1761, 2363, 3378
PpsI	GAGTC	6 cut(s)	60, 696, 1504, 1761, 2363, 3378
PshBI	ATTAAT	1 cut(s)	1482
Psp124BI	GAGCTC	2 cut(s)	50, 313
Psp1406I	AACGTT	1 cut(s)	2799
Psp6I	CCWGG	7 cut(s)	140, 1138, 1361, 1529, 1639, 1834, 2115
PspEI	GGTNACC	1 cut(s)	1997
PspFI	CCCAGC	1 cut(s)	2416
PspGI	CCWGG	7 cut(s)	140, 1138, 1361, 1529, 1639, 1834, 2115
PspN4I	GGNNCC	9 cut(s)	231, 1332, 1398, 1630, 1728, 1864, 2121, 3028, 3266
PspOMI	GGGCCC	1 cut(s)	2119
PspPI	GGNCC	6 cut(s)	765, 1863, 1907, 2119, 2120, 3027
PstI	CTGCAG	2 cut(s)	874, 1168
PstNI	CAGNNNCTG	3 cut(s)	2220, 2573, 3297
PsuI	RGATCY	4 cut(s)	229, 1069, 1168, 1396
PvuII	CAGCTG	1 cut(s)	2420
RsaI	GTAC	3 cut(s)	533, 2390, 3439
RsaNI	GTAC	3 cut(s)	532, 2389, 3438
SacI	GAGCTC	2 cut(s)	50, 313
SapI	GCTCTTC	1 cut(s)	2870
SaqAI	TTAA	7 cut(s)	860, 1074, 1283, 1482, 1709, 3065, 3209
SatI	GCNGC	9 cut(s)	106, 590, 873, 1308, 1832, 2221, 2333, 2468, 3045
Sau96I	GGNCC	6 cut(s)	765, 1863, 1907, 2119, 2120, 3027
SchI	GAGTC	6 cut(s)	60, 697, 1505, 1761, 2363, 3378
SfaNI	GCATC	9 cut(s)	391, 475, 509, 955, 1507, 2464, 2486, 2635, 2698
SfcI	CTRYAG	6 cut(s)	870, 889, 1065, 1164, 1752, 2709
SfuI	TTCGAA	2 cut(s)	2152, 3462
SinI	GGWCC	1 cut(s)	3027
SmaI	CCCGGG	1 cut(s)	394
SmlI	CTYRAG	2 cut(s)	2287, 2957
SmoI	CTYRAG	2 cut(s)	2287, 2957
SphI	GCATGC	1 cut(s)	2252
SseBI	AGGCCT	1 cut(s)	844
SspI	AATATT	1 cut(s)	903
SspMI	CTAG	8 cut(s)	633, 1220, 1674, 1719, 1764, 2229, 2753, 2984
SstI	GAGCTC	2 cut(s)	50, 313
StuI	AGGCCT	1 cut(s)	844
StyI	CCWWGG	7 cut(s)	225, 768, 836, 922, 1296, 2203, 2392
TaiI	ACGT	4 cut(s)	1456, 1507, 2644, 2802
TatI	WGTACW	1 cut(s)	531
TauI	GCSGC	2 cut(s)	108, 1834
Tru1I	TTAA	7 cut(s)	860, 1074, 1283, 1482, 1709, 3065, 3209
Tru9I	TTAA	7 cut(s)	860, 1074, 1283, 1482, 1709, 3065, 3209
TseFI	GTSAC	8 cut(s)	94, 173, 651, 1679, 1997, 2584, 2632, 3119
TseI	GCWGC	7 cut(s)	589, 872, 1307, 2220, 2332, 2467, 3044
Tsp45I	GTSAC	8 cut(s)	94, 173, 651, 1679, 1997, 2584, 2632, 3119
TspGWI	ACGGA	2 cut(s)	868, 2690
TspMI	CCCGGG	1 cut(s)	392
Van91I	CCANNNNNTGG	2 cut(s)	226, 1736
VneI	GTGCAC	2 cut(s)	194, 1275
VpaK11BI	GGWCC	1 cut(s)	3027
VspI	ATTAAT	1 cut(s)	1482
XapI	RAATTY	2 cut(s)	1091, 3464
XbaI	TCTAGA	1 cut(s)	632
XceI	RCATGY	1 cut(s)	2252
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3334
XmaI	CCCGGG	1 cut(s)	392
XmiI	GTMKAC	1 cut(s)	2838
XspI	CTAG	8 cut(s)	633, 1220, 1674, 1719, 1764, 2229, 2753, 2984
Zsp2I	ATGCAT	2 cut(s)	2479, 2650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.