Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009767

Physical Location & Seq

Genomic Coordinates Forward (+)

54199137 .. 54206122

Gene Structure 6986 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0446300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGTGGTTCTTTAGAAGGAAAGGCCCATCTGGGTTCTCATCATCTTCCACAGCAGAAGAAGTTACTCAAGGGATTGATGCCACTGGTCTCACTGCCATTGTTACAGGAGCATCTAGTGGCATTGGCACTGAAACTACGCGTGTTCTTGCACTGCGTGGTGCCCATGTGATCATGGGAGTGAGGAATATGGCTGCGGGTAAAGATGTGAAAGATGCGATAGTTAAGGAAATCCCCACTGCCAAAATTGATGCCATGGAGTTGGATCTTAGTTCATTGTCATCTGTGAGGAAATTTGCATCAGATTACAAATCCGCTGGTCATCCTCTAAACATCTTAATTAACAATGCAGGAATTATGGCGACCCCATTCTTGCTTTCCAAAGATAAGATTGAACTTCAGTTTGCCACAAACCACATAGGTCATTTTCTATTGACAAATCTTTTGTTGGATACTATGAAAAAGACTGCACGTGCAAGTAGCAAAGAAGGGAGAATTGTAAATGTATCCTCTGAAGCTCACCGGTTTCCATATCGTGGAGGAATCCGTTTTGATAAAATCAACGACCCATCGGGGTACAGCAGTTGGGCTGCATATGGTCAATCAAAGCTAGCTAACATTTTGCATGCCAAAGAACTTTCAAAACAATTGAAGGAAGAGAGGGCAAATATAACTGCAAATGCACTTCACCCTGGTGCAATTCTCACCAATCTTTTCCGTCATAGCAATGTTTTAAATGGGCTTGTTAATGTGCTCGGTAAAGTTGTGCTTAAAAATGTTCAGCAGGGAGCAGCAACAACTTGCTATGTGGCATTGCAGCCACAAGCTGAAGGGGTGAGCGGTGAATATTTTTCAGACAGTAATATTTCCAAGCCAACATCCCAAGCTGAAGACGAGTTGTTGGCAAAGAAACTCTGGGATTTCAGCAAGGATTTGACTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0000139 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005802 GO:0005886 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016021 GO:0016049 GO:0016740 GO:0016757 GO:0016758 GO:0019187 GO:0021700 GO:0022622 GO:0030154 GO:0030173 GO:0031090 GO:0031224 GO:0031228 GO:0031300 GO:0031301 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0051753 GO:0060560 GO:0070085 GO:0071554 GO:0071669 GO:0071695 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0097502 GO:0097708 GO:0098588 GO:0098791 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-RING_4

Protein Analysis

313

Amino Acids

33.84

Weight (kDa)

9.25

Isoelectric Point (pI)

31.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	31 - 179	4.7e-26	short chain dehydrogenase
KR	PF08659	31 - 131	5.8e-08	KR domain
adh_short_C2	PF13561	36 - 281	3.8e-16	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009767)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03050 AT5G16910
fragaria_vesca	FvH4_7g34010 FvH4_7g34010 FvH4_7g34010
malus_domestica	MD01G1236500.v1.1 MD07G1309200.v1.1
prunus_persica	Prupe.2G326600_v2.0.a1 Prupe.2G326600_v2.0.a1 Prupe.2G326600_v2.0.a1 Prupe.2G326600_v2.0.a1 Prupe.2G326600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0384261
rosa_laevigata	RLG00000026053
rosa_multiflora	Rmu_sc0011271.1_g000003
rosa_rugosa	Rorug01G0446300
rosa_samantha	Rh1AG471800 Rh1BG429500 Rh1CG442100 Rh1DG462200
rosa_wichuraiana	Rw1G040080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	158
AccB7I	CCANNNNNTGG	1 cut(s)	533
AccBSI	CCGCTC	1 cut(s)	837
AccII	CGCG	1 cut(s)	139
AciI	CCGC	3 cut(s)	194, 312, 837
AclWI	GGATC	1 cut(s)	270
AcsI	RAATTY	1 cut(s)	290
AcuI	CTGAAG	4 cut(s)	380, 531, 846, 906
AcvI	CACGTG	1 cut(s)	470
AdeI	CACNNNGTG	1 cut(s)	155
AfaI	GTAC	1 cut(s)	575
AfiI	CCNNNNNNNGG	1 cut(s)	533
AflIII	ACRYGT	1 cut(s)	137
AgeI	ACCGGT	1 cut(s)	519
AgsI	TTSAA	3 cut(s)	392, 639, 649
AjnI	CCWGG	1 cut(s)	688
AleI	CACNNNNGTG	1 cut(s)	690
AluBI	AGCT	5 cut(s)	515, 607, 611, 824, 884
AluI	AGCT	5 cut(s)	515, 607, 611, 824, 884
Alw21I	GWGCWC	1 cut(s)	753
Alw26I	GTCTC	1 cut(s)	92
AlwI	GGATC	1 cut(s)	270
AoxI	GGCC	1 cut(s)	22
ApeKI	GCWGC	4 cut(s)	191, 587, 788, 814
ApoI	RAATTY	1 cut(s)	290
ArsI	GACNNNNNNTTYG	2 cut(s)	424, 456
AsiGI	ACCGGT	1 cut(s)	519
AspS9I	GGNCC	1 cut(s)	23
AsuHPI	GGTGA	5 cut(s)	509, 677, 694, 844, 851
AsuNHI	GCTAGC	1 cut(s)	607
BaeGI	GKGCMC	1 cut(s)	163
BaeI	ACNNNNGTAYC	2 cut(s)	565, 598
BanI	GGYRCC	1 cut(s)	158
BbrPI	CACGTG	1 cut(s)	470
BbsI	GAAGAC	1 cut(s)	894
Bbv12I	GWGCWC	1 cut(s)	753
BbvI	GCAGC	4 cut(s)	178, 574, 800, 826
BccI	CCATC	2 cut(s)	34, 574
BciT130I	CCWGG	1 cut(s)	690
BciVI	GTATCC	2 cut(s)	442, 514
BclI	TGATCA	1 cut(s)	168
BcoDI	GTCTC	1 cut(s)	92
BfaI	CTAG	2 cut(s)	114, 608
BfuI	GTATCC	2 cut(s)	442, 514
BisI	GCNGC	4 cut(s)	192, 588, 789, 815
BlsI	GCNGC	4 cut(s)	193, 589, 790, 816
Bme1390I	CCNGG	1 cut(s)	690
BmgT120I	GGNCC	1 cut(s)	23
BmiI	GGNNCC	1 cut(s)	160
BmrFI	CCNGG	1 cut(s)	690
BmsI	GCATC	5 cut(s)	67, 119, 202, 238, 305
BmtI	GCTAGC	1 cut(s)	611
BpiI	GAAGAC	1 cut(s)	894
BpuEI	CTTGAG	1 cut(s)	51
BsaAI	YACGTR	1 cut(s)	470
BsaI	GGTCTC	1 cut(s)	92
BsaJI	CCNNGG	2 cut(s)	252, 688
BsaWI	WCCGGW	1 cut(s)	519
Bsc4I	CCNNNNNNNGG	1 cut(s)	533
Bse118I	RCCGGY	1 cut(s)	519
Bse1I	ACTGG	1 cut(s)	88
Bse3DI	GCAATG	2 cut(s)	730, 809
BseBI	CCWGG	1 cut(s)	690
BseDI	CCNNGG	2 cut(s)	252, 688
BseGI	GGATG	2 cut(s)	319, 875
BseLI	CCNNNNNNNGG	1 cut(s)	533
BseMI	GCAATG	2 cut(s)	730, 809
BseNI	ACTGG	1 cut(s)	88
BseSI	GKGCMC	1 cut(s)	163
BseXI	GCAGC	4 cut(s)	178, 574, 800, 826
BsgI	GTGCAG	1 cut(s)	450
Bsh1236I	CGCG	1 cut(s)	139
BshFI	GGCC	1 cut(s)	24
BshNI	GGYRCC	1 cut(s)	158
BshTI	ACCGGT	1 cut(s)	519
BsiHKAI	GWGCWC	1 cut(s)	753
BsiSI	CCGG	1 cut(s)	520
BslI	CCNNNNNNNGG	1 cut(s)	533
BsmAI	GTCTC	1 cut(s)	92
BsnI	GGCC	1 cut(s)	24
Bso31I	GGTCTC	1 cut(s)	92
Bsp1286I	GDGCHC	2 cut(s)	163, 753
Bsp143I	GATC	2 cut(s)	168, 262
Bsp19I	CCATGG	1 cut(s)	252
BspACI	CCGC	3 cut(s)	194, 312, 837
BspANI	GGCC	1 cut(s)	24
BspFNI	CGCG	1 cut(s)	139
BspLI	GGNNCC	1 cut(s)	160
BspOI	GCTAGC	1 cut(s)	611
BspPI	GGATC	1 cut(s)	270
BspT107I	GGYRCC	1 cut(s)	158
BspTNI	GGTCTC	1 cut(s)	92
BsrBI	CCGCTC	1 cut(s)	837
BsrDI	GCAATG	2 cut(s)	730, 809
BsrFI	RCCGGY	1 cut(s)	519
BsrI	ACTGG	1 cut(s)	88
BssAI	RCCGGY	1 cut(s)	519
BssECI	CCNNGG	2 cut(s)	252, 688
BssMI	GATC	2 cut(s)	168, 262
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	690
Bst4CI	ACNGT	1 cut(s)	857
Bst6I	CTCTTC	1 cut(s)	648
BstBAI	YACGTR	1 cut(s)	470
BstC8I	GCNNGC	2 cut(s)	609, 624
BstDEI	CTNAG	1 cut(s)	266
BstDSI	CCRYGG	1 cut(s)	252
BstF5I	GGATG	2 cut(s)	319, 875
BstFNI	CGCG	1 cut(s)	139
BstKTI	GATC	2 cut(s)	171, 265
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	2 cut(s)	168, 262
BstNI	CCWGG	1 cut(s)	690
BstNSI	RCATGY	1 cut(s)	626
BstSCI	CCNGG	1 cut(s)	688
BstSLI	GKGCMC	1 cut(s)	163
BstUI	CGCG	1 cut(s)	139
BstV1I	GCAGC	4 cut(s)	178, 574, 800, 826
BstV2I	GAAGAC	1 cut(s)	894
BstX2I	RGATCY	1 cut(s)	262
BstXI	CCANNNNNNTGG	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	262
BsuI	GTATCC	2 cut(s)	442, 514
BsuRI	GGCC	1 cut(s)	24
BtgI	CCRYGG	1 cut(s)	252
BtsCI	GGATG	2 cut(s)	319, 875
BtsI	GCAGTG	3 cut(s)	90, 149, 234
BtsIMutI	CAGTG	5 cut(s)	81, 90, 126, 149, 234
Cac8I	GCNNGC	2 cut(s)	609, 624
Cfr10I	RCCGGY	1 cut(s)	519
Cfr13I	GGNCC	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	574
CspAI	ACCGGT	1 cut(s)	519
CviAII	CATG	4 cut(s)	164, 172, 253, 623
CviQI	GTAC	1 cut(s)	574
DdeI	CTNAG	1 cut(s)	266
DpnI	GATC	2 cut(s)	170, 264
DpnII	GATC	2 cut(s)	168, 262
DraI	TTTAAA	1 cut(s)	732
DraIII	CACNNNGTG	1 cut(s)	155
Eam1104I	CTCTTC	1 cut(s)	648
EarI	CTCTTC	1 cut(s)	648
Eco130I	CCWWGG	1 cut(s)	252
Eco31I	GGTCTC	1 cut(s)	92
Eco57I	CTGAAG	4 cut(s)	380, 531, 846, 906
Eco72I	CACGTG	1 cut(s)	470
EcoRII	CCWGG	1 cut(s)	688
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	4 cut(s)	167, 175, 256, 626
FalI	AAGNNNNNCTT	2 cut(s)	750, 782
FatI	CATG	4 cut(s)	163, 171, 252, 622
FauI	CCCGC	1 cut(s)	187
FauNDI	CATATG	1 cut(s)	592
FbaI	TGATCA	1 cut(s)	168
Fnu4HI	GCNGC	4 cut(s)	192, 588, 789, 815
FokI	GGATG	2 cut(s)	306, 862
Fsp4HI	GCNGC	4 cut(s)	192, 588, 789, 815
FspBI	CTAG	2 cut(s)	114, 608
GluI	GCNGC	4 cut(s)	192, 588, 789, 815
HaeIII	GGCC	1 cut(s)	24
HapII	CCGG	1 cut(s)	520
Hin1II	CATG	4 cut(s)	167, 175, 256, 626
HinfI	GANTC	1 cut(s)	540
HpaII	CCGG	1 cut(s)	520
HphI	GGTGA	5 cut(s)	509, 677, 694, 844, 851
Hpy188I	TCNGA	3 cut(s)	301, 511, 853
HpyAV	CCTTC	4 cut(s)	9, 479, 643, 821
HpyCH4III	ACNGT	1 cut(s)	857
HpyCH4IV	ACGT	1 cut(s)	469
HpyF3I	CTNAG	1 cut(s)	266
HpySE526I	ACGT	1 cut(s)	469
Hsp92II	CATG	4 cut(s)	167, 175, 256, 626
Ksp22I	TGATCA	1 cut(s)	168
Kzo9I	GATC	2 cut(s)	168, 262
LmnI	GCTCC	2 cut(s)	107, 785
Lsp1109I	GCAGC	4 cut(s)	178, 574, 800, 826
LweI	GCATC	5 cut(s)	67, 119, 202, 238, 305
MaeI	CTAG	2 cut(s)	114, 608
MaeII	ACGT	1 cut(s)	469
MaeIII	GTNAC	2 cut(s)	61, 100
MalI	GATC	2 cut(s)	170, 264
MbiI	CCGCTC	1 cut(s)	837
MboI	GATC	2 cut(s)	168, 262
MboII	GAAGA	4 cut(s)	36, 68, 665, 899
MfeI	CAATTG	1 cut(s)	644
MflI	RGATCY	1 cut(s)	262
MhlI	GDGCHC	2 cut(s)	163, 753
MluCI	AATT	7 cut(s)	243, 290, 336, 351, 492, 644, 696
MluI	ACGCGT	1 cut(s)	137
MmeI	TCCRAC	2 cut(s)	240, 426
MnlI	CCTC	6 cut(s)	174, 279, 333, 517, 530, 651
MseI	TTAA	6 cut(s)	222, 335, 339, 731, 744, 768
MslI	CAYNNNNRTG	3 cut(s)	176, 690, 723
MspA1I	CMGCKG	1 cut(s)	314
MspI	CCGG	1 cut(s)	520
MspR9I	CCNGG	1 cut(s)	690
MunI	CAATTG	1 cut(s)	644
MvaI	CCWGG	1 cut(s)	690
MvnI	CGCG	1 cut(s)	139
NcoI	CCATGG	1 cut(s)	252
NdeI	CATATG	1 cut(s)	592
NdeII	GATC	2 cut(s)	168, 262
NheI	GCTAGC	1 cut(s)	607
NlaIII	CATG	4 cut(s)	167, 175, 256, 626
NlaIV	GGNNCC	1 cut(s)	160
NspI	RCATGY	1 cut(s)	626
OliI	CACNNNNGTG	1 cut(s)	690
PacI	TTAATTAA	1 cut(s)	339
PaeI	GCATGC	1 cut(s)	626
PfeI	GAWTC	1 cut(s)	540
PflMI	CCANNNNNTGG	1 cut(s)	533
PinAI	ACCGGT	1 cut(s)	519
PkrI	GCNGC	4 cut(s)	193, 589, 790, 816
PmaCI	CACGTG	1 cut(s)	470
PmlI	CACGTG	1 cut(s)	470
Ppu21I	YACGTR	1 cut(s)	470
Psp6I	CCWGG	1 cut(s)	688
PspCI	CACGTG	1 cut(s)	470
PspGI	CCWGG	1 cut(s)	688
PspN4I	GGNNCC	1 cut(s)	160
PspPI	GGNCC	1 cut(s)	23
PsuI	RGATCY	1 cut(s)	262
RsaI	GTAC	1 cut(s)	575
RsaNI	GTAC	1 cut(s)	574
RseI	CAYNNNNRTG	3 cut(s)	176, 690, 723
SaqAI	TTAA	6 cut(s)	222, 335, 339, 731, 744, 768
SatI	GCNGC	4 cut(s)	192, 588, 789, 815
Sau3AI	GATC	2 cut(s)	168, 262
Sau96I	GGNCC	1 cut(s)	23
ScrFI	CCNGG	1 cut(s)	690
SduI	GDGCHC	2 cut(s)	163, 753
SetI	ASST	7 cut(s)	421, 472, 517, 609, 613, 826, 886
SfaNI	GCATC	5 cut(s)	67, 119, 202, 238, 305
SmiMI	CAYNNNNRTG	3 cut(s)	176, 690, 723
SmlI	CTYRAG	1 cut(s)	66
SmoI	CTYRAG	1 cut(s)	66
SphI	GCATGC	1 cut(s)	626
Sse9I	AATT	7 cut(s)	243, 290, 336, 351, 492, 644, 696
SsiI	CCGC	3 cut(s)	194, 312, 837
SspI	AATATT	2 cut(s)	845, 862
SspMI	CTAG	2 cut(s)	114, 608
StyD4I	CCNGG	1 cut(s)	688
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	857
TaiI	ACGT	1 cut(s)	472
TasI	AATT	7 cut(s)	243, 290, 336, 351, 492, 644, 696
TfiI	GAWTC	1 cut(s)	540
Tru1I	TTAA	6 cut(s)	222, 335, 339, 731, 744, 768
Tru9I	TTAA	6 cut(s)	222, 335, 339, 731, 744, 768
TscAI	CASTG	5 cut(s)	88, 97, 133, 156, 241
TseI	GCWGC	4 cut(s)	191, 587, 788, 814
TspDTI	ATGAA	2 cut(s)	261, 470
TspGWI	ACGGA	2 cut(s)	533, 704
TspRI	CASTG	5 cut(s)	88, 97, 133, 156, 241
Van91I	CCANNNNNTGG	1 cut(s)	533
XapI	RAATTY	1 cut(s)	290
XceI	RCATGY	1 cut(s)	626
XspI	CTAG	2 cut(s)	114, 608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.