Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0009767

Physical Location & Seq

Genomic Coordinates Forward (+)

67499578 .. 67503777

Gene Structure 4200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G040080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3435 bp

ATGGCTTCCAAATCGTTCAAGGGGAGGCTATCAAATCTATCATCGAGCTCTGACATTCCCGATGGACTCGGCAAGCCTCCAATGCCTCCCACCGTCACATTTGGCCGCAGAACCTCCTCCGGTCGCTACATCAGCTACTCCAGGGATGATCTCGATAGCGAAATTGGGAGTGGTGACTTTATGAACTACACAGTGCACATACCTCCCACCCCAGACAACCAACCCATGGATCCATCCATTTCGCAGAAGGTTGAGGAGCAGTATGTGTCCAACTCGCTTTTCACAGGGGGATTCAACAGTGTTACCCGAGCTCATCTTATGGACAAGGTGATTGAATCCGAAACCAGCCATCCGCAGATGGCCGGTGCTAAAGGGTCATCATGTGCAATTCCCGGGTGTGATGCAAAGGTCATGAGCGATCAACGCGGGGAGGACATTCTTCCTTGTGAGTGTGATTTCAAGATATGTCGAGATTGCTATACTGATGCTGTCAAAACTGGGGGTGGTGTATGTCCCGGATGCAAGGAACAGTACAAGAACACAGATTTGGATGAAATGGCTATGGAGGGTGCATTGCCACCGCTTCCGCTGCCTTTGCCTAATGGGATGTCTAAAATGGATAGTGGGATGTCTAGAATGGAGAGGAGGTTGTCACTCATGAAGTCAACAAAGTCGGGTCTGATGAGGAGTCAAACTGGTGATTTTGATCACAACCGGTGGCTGTTTGAAACAAAAGGAACTTATGGCTATGGGAATGCTATCTGGCCCAAGGAAGGAGGTTTTGGAAATGGCAAAGACGATGATGTCGTTGAGCCAAATGAGCTGATGAACAAACCATGGAGGCCTCTCACACGGAAATTAAAGATACCTGCAGCTATTCTAAGCCCCTATAGGCTTCTAATATTTGTCCGCATGGTAGTCCTTGGGCTGTTTTTGGCATGGAGGATCAGCAATCCAAATACTGATGCAATGTGGCTTTGGGGAATGTCAATAGTTTGTGAGGTCTGGTTTGCTTTTTCGTGGCTTCTCGATCAACTTCCCAAGTTGTGCCCAATCAATCGTTCTACAGATCTTAATGTCTTGAAGGAGAAATTTGAAACACCTACTCTCAACAACCCCACCGGGAAATCTGATCTTCCAGGCATAGATATCTTTGTGTCCACTGCAGATCCAGATAAAGAACCACCACTTGTTACAGCAAACACTATCTTATCTATTCTAGCTACTGATTACCCTGTTGAAAAGCTTGCTTGCTATGTTTCTGATGATGGAGGTGCACTTTTAACCTTTGAGGCCATGGCAGAAGCAGCAAGTTTTGCTAATATATGGGTTCCCTTCTGCCGTAAACATGGTATTGAGCCCAGGAATCCTGAATCTTACTTCAGTTTGAAGAGGGATCCATACAAGAACAAAGTGAAATCTGACTTTGTGAAGGATCGTAGAAGGGTGAAACGTGAATATGACGAGTTCAAGGTTCGGATTAATGGACTGCCTGAGTCTATACGTCGCCGATCAGATGCTTATCATGCCAGGGAGGAAATCAAGGCCATGAAGCTTCAAAGACAGAACAGAGAGGATGAGCCTGTGGAGACTGTGAAGATTCCCAAAGCAACTTGGATGGCTGATGGAACCCACTGGCCTGGGACTTGGTTGACCTCTTCATCCGAGCATTCTAGGAGTGACCATGCTGGTATTATACAGGTGATGTTAAAACCCCCTAGTGAGGAACCACTGCATGGAACTGATGGAACTATAGATGAAGCTAGACTCATCGACCTCACTGATATTGATATCCGCCTTCCCATGCTTGTTTATGTGTCTCGTGAAAAGCGGCCAGGCTATGATCACAACAAGAAGGCAGGGGCCATGAATGCTCTTGTTCGAGCCTCTGCTATAATGTCCAATGGCCCATTCATTCTCAACCTCGACTGTGATCATTATATCTACAATTCTCAGGCAATGAGGGAAGGTATGTGCTTCATGATGGATCGCGGAGGTGACCGGCTCTGTTATGTTCAGTTCCCACAGAGATTTGAGGGTATTGACCCTTCGGATCGATATGCCAACCACAACACAGTTTTCTTTGATGTCAATATGCGGGCTCTTGATGGTCTCCAGGGCCCAGTTTATGTCGGAACTGGATGTCTATTTCGAAGAATTGCCCTGTATGGTTTTGACCCACCTCGATCAAAAGAACATCACCAAGGTTGTTGCAGTTGCTGCTTTTCTAGTCGTAAAAAGAATAAGCATGCCTCAGTAGCCCACACCCCTGAAGAAAACCGAGCCTTGAGAATGGGTGATTCTGATGATGAAGAGATGAATCTCTCCCTGCTCCGAAGAGTGGCAGAGTACCAAGGTCGCCCTCTTGCAGATCACCCAGCTGTAAAGAATGGACGCCCACCCGGTGCTCTCACCATTCCTCGTGAGCTGCTTGATGCATCAACTGTTGCAGAGGCTATCAGTGTCATTTCCTGCTGGTATGAAGACAAGACTGAGTGGGGAGATCGTGTCGGATGGATTTACGGTTCAGTTACTGAAGATGTGGTCACTGGTTACAGAATGCACAACAGAGGATGGAAATCTGTTTACTGTGTGACCAAACGTGATGCATTTCGTGGAACTGCACCTATCAATCTCACTGATAGGTTGCATCAAGTCCTCCGTTGGGCTACAGGCTCAGTTGAAATCTTTTTCTCCCGCAACAATGCCCTGCTAGCCAGCCCGAGAATGAAGATTCTGCAAAGAGTAGCATATCTCAACGTTGGTATCTACCCGTTCACATCCATCTTCCTTATCGTCTACTGCTTCCTCCCTGCACTTTCGCTCTTCTCTGGTCAGTTCATTGTGCAGTCCCTCAATGTTACTTTCCTGACCTATCTTTTGGTCATTACTCTCACCTTATGTATGCTTGCCATACTTGAGATCAAATGGTCTGGCATTGAACTAGAAGAGTGGTGGAGAAATGAGCAGTTTTGGTTGATTGGAGGGACCAGTGCTCACCTTGCTGCTGTGATTCAGGGGCTATTAAAAGTTATTGCAGGGATTGAAATCTCTTTCACCTTGACTTCAAAATCAGGTGGTGACGATGAGGATGATGACTTTGCTGATCTCTACATTGTGAAATGGACATCTCTGATGATACCCCCAATAACAATCATGATGGTCAACTTAATTGCAATAGCAGTTGGGTTCAGCAGAACAATATACAGCGTGATTCCGCAGTGGAGCCGATTGATTGGAGGTGTTTTCTTCAGTTTCTGGGTTTTAGCACATCTATACCCATTTGCCAAAGGATTGATGGGGAGACGAGGGAGGACACCCACCATTGTTTTTGTATGGTCAGGACTCATTGCAATCACCATCTCTCTTCTTTGGGTGGCAATCAATCCCCCTGCTGGTACAAACCAAATTGGAGGATCATTCGAATTCCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0000139 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005794 GO:0005802 GO:0005886 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016021 GO:0016049 GO:0016740 GO:0016757 GO:0016758 GO:0019187 GO:0021700 GO:0022622 GO:0030154 GO:0030173 GO:0031090 GO:0031224 GO:0031228 GO:0031300 GO:0031301 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0051753 GO:0060560 GO:0070085 GO:0071554 GO:0071669 GO:0071695 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0097502 GO:0097708 GO:0098588 GO:0098791 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-RING_4

Protein Analysis

1144

Amino Acids

128.38

Weight (kDa)

6.76

Isoelectric Point (pI)

41.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_4	PF14570	130 - 179	6.2e-18	RING/Ubox like zinc-binding domain
Cellulose_synt	PF03552	382 - 1134	0.0	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009767)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03050 AT5G16910
fragaria_vesca	FvH4_7g34010 FvH4_7g34010 FvH4_7g34010
malus_domestica	MD01G1236500.v1.1 MD07G1309200.v1.1
prunus_persica	Prupe.2G326600_v2.0.a1 Prupe.2G326600_v2.0.a1 Prupe.2G326600_v2.0.a1 Prupe.2G326600_v2.0.a1 Prupe.2G326600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0384261
rosa_laevigata	RLG00000026053
rosa_multiflora	Rmu_sc0011271.1_g000003
rosa_rugosa	Rorug01G0446300
rosa_samantha	Rh1AG471800 Rh1BG429500 Rh1CG442100 Rh1DG462200
rosa_wichuraiana	Rw1G040080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	803
Acc36I	ACCTGC	1 cut(s)	877
AccB7I	CCANNNNNTGG	2 cut(s)	226, 1736
AccI	GTMKAC	1 cut(s)	2799
AccII	CGCG	2 cut(s)	426, 1992
AclI	AACGTT	1 cut(s)	2760
AcoI	YGGCCR	3 cut(s)	103, 360, 1832
AcsI	RAATTY	2 cut(s)	1091, 3425
AcuI	CTGAAG	4 cut(s)	1366, 2292, 2556, 3235
AcyI	GRCGYC	1 cut(s)	2395
AdeI	CACNNNGTG	1 cut(s)	2405
AfaI	GTAC	3 cut(s)	533, 2351, 3400
AfiI	CCNNNNNNNGG	7 cut(s)	226, 773, 1723, 1736, 2341, 2665, 3395
AgeI	ACCGGT	1 cut(s)	714
AjnI	CCWGG	7 cut(s)	140, 1138, 1361, 1529, 1639, 1834, 2115
AloI	GAACNNNNNNTCC	2 cut(s)	2509, 2541
Alw21I	GWGCWC	6 cut(s)	50, 198, 313, 1279, 2410, 2998
Alw26I	GTCTC	4 cut(s)	1583, 1824, 2117, 3298
Alw44I	GTGCAC	2 cut(s)	194, 1275
AlwNI	CAGNNNCTG	3 cut(s)	2220, 2534, 3258
Ama87I	CYCGRG	3 cut(s)	306, 392, 2722
ApaI	GGGCCC	1 cut(s)	2123
ApaLI	GTGCAC	2 cut(s)	194, 1275
ApeKI	GCWGC	6 cut(s)	589, 872, 1307, 2220, 2428, 3005
ApoI	RAATTY	2 cut(s)	1091, 3425
ArsI	GACNNNNNNTTYG	2 cut(s)	2863, 2895
AseI	ATTAAT	1 cut(s)	1482
AsiGI	ACCGGT	1 cut(s)	714
AspS9I	GGNCC	6 cut(s)	765, 1863, 1907, 2119, 2120, 2988
AsuC2I	CCSGG	5 cut(s)	393, 394, 516, 1123, 2403
AsuII	TTCGAA	2 cut(s)	2152, 3423
AsuNHI	GCTAGC	1 cut(s)	2713
AvaI	CYCGRG	3 cut(s)	306, 392, 2722
AvaII	GGWCC	1 cut(s)	2988
BaeGI	GKGCMC	4 cut(s)	198, 1052, 1279, 2123
BaeI	ACNNNNGTAYC	2 cut(s)	2749, 2782
BamHI	GGATCC	2 cut(s)	229, 1396
BanII	GRGCYC	5 cut(s)	50, 313, 1362, 2104, 2123
BarI	GAAGNNNNNNTAC	2 cut(s)	2032, 2064
BauI	CACGAG	2 cut(s)	1821, 2421
BbsI	GAAGAC	1 cut(s)	2490
Bbv12I	GWGCWC	6 cut(s)	50, 198, 313, 1279, 2410, 2998
BbvI	GCAGC	6 cut(s)	576, 884, 1319, 2207, 2415, 2992
BceAI	ACGGC	1 cut(s)	1326
BciT130I	CCWGG	7 cut(s)	142, 1140, 1363, 1531, 1641, 1836, 2117
BclI	TGATCA	3 cut(s)	706, 1843, 1933
BcnI	CCSGG	5 cut(s)	393, 394, 516, 1123, 2403
BcoDI	GTCTC	4 cut(s)	1583, 1824, 2117, 3298
BfaI	CTAG	8 cut(s)	633, 1220, 1674, 1719, 1764, 2229, 2714, 2945
BfmI	CTRYAG	6 cut(s)	870, 889, 1065, 1164, 1752, 2670
BfuAI	ACCTGC	1 cut(s)	877
BglII	AGATCT	1 cut(s)	1069
BisI	GCNGC	8 cut(s)	106, 590, 873, 1308, 1832, 2221, 2429, 3006
BlsI	GCNGC	8 cut(s)	107, 591, 874, 1309, 1833, 2222, 2430, 3007
Bme18I	GGWCC	1 cut(s)	2988
BmeT110I	CYCGRG	3 cut(s)	306, 392, 2722
BmgT120I	GGNCC	6 cut(s)	765, 1863, 1907, 2119, 2120, 2988
BmiI	GGNNCC	9 cut(s)	231, 1332, 1398, 1630, 1728, 1864, 2121, 2989, 3227
BmrI	ACTGGG	2 cut(s)	507, 2117
BmsI	GCATC	9 cut(s)	391, 475, 509, 955, 1507, 2425, 2447, 2596, 2659
BmtI	GCTAGC	1 cut(s)	2717
BmuI	ACTGGG	2 cut(s)	507, 2117
BpiI	GAAGAC	1 cut(s)	2490
BpmI	CTGGAG	2 cut(s)	124, 2099
Bpu14I	TTCGAA	2 cut(s)	2152, 3423
BpuEI	CTTGAG	2 cut(s)	2308, 2939
BpuMI	CCSGG	5 cut(s)	393, 394, 516, 1123, 2403
Bsa29I	ATCGAT	1 cut(s)	2056
BsaBI	GATNNNNATC	4 cut(s)	705, 1521, 2578, 3047
BsaHI	GRCGYC	1 cut(s)	2395
BsaI	GGTCTC	1 cut(s)	2117
BsaWI	WCCGGW	2 cut(s)	119, 714
BsaXI	ACNNNNNCTCC	4 cut(s)	632, 662, 2493, 2523
Bsc4I	CCNNNNNNNGG	7 cut(s)	226, 773, 1723, 1736, 2341, 2665, 3395
Bse118I	RCCGGY	3 cut(s)	362, 714, 2001
Bse1I	ACTGG	7 cut(s)	502, 700, 1640, 2123, 2143, 2554, 2991
Bse3DI	GCAATG	4 cut(s)	572, 975, 1965, 3348
Bse8I	GATNNNNATC	4 cut(s)	705, 1521, 2578, 3047
BseBI	CCWGG	7 cut(s)	142, 1140, 1363, 1531, 1641, 1836, 2117
BseCI	ATCGAT	1 cut(s)	2056
BseJI	GATNNNNATC	4 cut(s)	705, 1521, 2578, 3047
BseLI	CCNNNNNNNGG	7 cut(s)	226, 773, 1723, 1736, 2341, 2665, 3395
BseMI	GCAATG	4 cut(s)	572, 975, 1965, 3348
BseMII	CTCAG	5 cut(s)	1485, 1967, 2268, 2484, 2691
BseNI	ACTGG	7 cut(s)	502, 700, 1640, 2123, 2143, 2554, 2991
BseRI	GAGGAG	4 cut(s)	106, 269, 658, 700
BseSI	GKGCMC	4 cut(s)	198, 1052, 1279, 2123
BseXI	GCAGC	6 cut(s)	576, 884, 1319, 2207, 2415, 2992
BseYI	CCCAGC	1 cut(s)	2377
BsgI	GTGCAG	3 cut(s)	2607, 2799, 2867
Bsh1236I	CGCG	2 cut(s)	426, 1992
Bsh1285I	CGRYCG	1 cut(s)	124
BshTI	ACCGGT	1 cut(s)	714
BshVI	ATCGAT	1 cut(s)	2056
BsiEI	CGRYCG	1 cut(s)	124
BsiHKAI	GWGCWC	6 cut(s)	50, 198, 313, 1279, 2410, 2998
BsiHKCI	CYCGRG	3 cut(s)	306, 392, 2722
BsiSI	CCGG	8 cut(s)	120, 363, 393, 516, 715, 1122, 2002, 2403
BslFI	GGGAC	4 cut(s)	498, 1657, 2836, 3001
BslI	CCNNNNNNNGG	7 cut(s)	226, 773, 1723, 1736, 2341, 2665, 3395
BsmAI	GTCTC	4 cut(s)	1583, 1824, 2117, 3298
BsmBI	CGTCTC	1 cut(s)	3298
BsmFI	GGGAC	4 cut(s)	498, 1657, 2836, 3001
BsmI	GAATGC	4 cut(s)	760, 1669, 1876, 2565
Bso31I	GGTCTC	1 cut(s)	2117
BsoBI	CYCGRG	3 cut(s)	306, 392, 2722
Bsp119I	TTCGAA	2 cut(s)	2152, 3423
Bsp120I	GGGCCC	1 cut(s)	2119
Bsp19I	CCATGG	3 cut(s)	225, 836, 1296
BspCNI	CTCAG	5 cut(s)	1486, 1966, 2267, 2485, 2690
BspDI	ATCGAT	1 cut(s)	2056
BspFNI	CGCG	2 cut(s)	426, 1992
BspHI	TCATGA	4 cut(s)	411, 657, 1980, 3156
BspLI	GGNNCC	9 cut(s)	231, 1332, 1398, 1630, 1728, 1864, 2121, 2989, 3227
BspMAI	CTGCAG	2 cut(s)	874, 1168
BspMI	ACCTGC	1 cut(s)	877
BspOI	GCTAGC	1 cut(s)	2717
BspQI	GCTCTTC	1 cut(s)	2831
BspT104I	TTCGAA	2 cut(s)	2152, 3423
BspTNI	GGTCTC	1 cut(s)	2117
BsrDI	GCAATG	4 cut(s)	572, 975, 1965, 3348
BsrFI	RCCGGY	3 cut(s)	362, 714, 2001
BsrI	ACTGG	7 cut(s)	502, 700, 1640, 2123, 2143, 2554, 2991
BssAI	RCCGGY	3 cut(s)	362, 714, 2001
BssNI	GRCGYC	1 cut(s)	2395
BssSI	CACGAG	2 cut(s)	1821, 2421
BssT1I	CCWWGG	7 cut(s)	225, 768, 836, 922, 1296, 2203, 2353
Bst2BI	CACGAG	2 cut(s)	1821, 2421
Bst2UI	CCWGG	7 cut(s)	142, 1140, 1363, 1531, 1641, 1836, 2117
Bst6I	CTCTTC	7 cut(s)	1385, 1663, 2307, 2332, 2831, 2943, 3372
BstACI	GRCGYC	1 cut(s)	2395
BstAPI	GCANNNNNTGC	2 cut(s)	1316, 2220
BstBI	TTCGAA	2 cut(s)	2152, 3423
BstC8I	GCNNGC	8 cut(s)	74, 1248, 1252, 2100, 2250, 2715, 2719, 2910
BstDEI	CTNAG	6 cut(s)	881, 1494, 1953, 2254, 2493, 2677
BstDSI	CCRYGG	3 cut(s)	225, 836, 1296
BstEII	GGTNACC	1 cut(s)	1997
BstFNI	CGCG	2 cut(s)	426, 1992
BstMAI	GTCTC	4 cut(s)	1583, 1824, 2117, 3298
BstMCI	CGRYCG	1 cut(s)	124
BstNI	CCWGG	7 cut(s)	142, 1140, 1363, 1531, 1641, 1836, 2117
BstNSI	RCATGY	1 cut(s)	2252
BstPI	GGTNACC	1 cut(s)	1997
BstSFI	CTRYAG	6 cut(s)	870, 889, 1065, 1164, 1752, 2670
BstSLI	GKGCMC	4 cut(s)	198, 1052, 1279, 2123
BstUI	CGCG	2 cut(s)	426, 1992
BstV1I	GCAGC	6 cut(s)	576, 884, 1319, 2207, 2415, 2992
BstV2I	GAAGAC	1 cut(s)	2490
BstX2I	RGATCY	4 cut(s)	229, 1069, 1168, 1396
BstXI	CCANNNNNNTGG	1 cut(s)	1640
BstYI	RGATCY	4 cut(s)	229, 1069, 1168, 1396
Bsu15I	ATCGAT	1 cut(s)	2056
BsuTUI	ATCGAT	1 cut(s)	2056
BtgI	CCRYGG	3 cut(s)	225, 836, 1296
BtsI	GCAGTG	3 cut(s)	1161, 1730, 3227
BveI	ACCTGC	1 cut(s)	877
Cac8I	GCNNGC	8 cut(s)	74, 1248, 1252, 2100, 2250, 2715, 2719, 2910
CaiI	CAGNNNCTG	3 cut(s)	2220, 2534, 3258
CciI	TCATGA	4 cut(s)	411, 657, 1980, 3156
Cfr10I	RCCGGY	3 cut(s)	362, 714, 2001
Cfr13I	GGNCC	6 cut(s)	765, 1863, 1907, 2119, 2120, 2988
Cfr9I	CCCGGG	1 cut(s)	392
ClaI	ATCGAT	1 cut(s)	2056
CseI	GACGC	1 cut(s)	2403
Csp6I	GTAC	3 cut(s)	532, 2350, 3399
CspAI	ACCGGT	1 cut(s)	714
CviQI	GTAC	3 cut(s)	532, 2350, 3399
DdeI	CTNAG	6 cut(s)	881, 1494, 1953, 2254, 2493, 2677
DraIII	CACNNNGTG	1 cut(s)	2405
DrdI	GACNNNNNNGTC	1 cut(s)	803
DseDI	GACNNNNNNGTC	1 cut(s)	803
EaeI	YGGCCR	3 cut(s)	103, 360, 1832
Eam1104I	CTCTTC	7 cut(s)	1385, 1663, 2307, 2332, 2831, 2943, 3372
EarI	CTCTTC	7 cut(s)	1385, 1663, 2307, 2332, 2831, 2943, 3372
EciI	GGCGGA	1 cut(s)	1784
Ecl136II	GAGCTC	2 cut(s)	48, 311
Eco130I	CCWWGG	7 cut(s)	225, 768, 836, 922, 1296, 2203, 2353
Eco147I	AGGCCT	1 cut(s)	844
Eco24I	GRGCYC	5 cut(s)	50, 313, 1362, 2104, 2123
Eco31I	GGTCTC	1 cut(s)	2117
Eco32I	GATATC	2 cut(s)	1150, 1792
Eco47I	GGWCC	1 cut(s)	2988
Eco53kI	GAGCTC	2 cut(s)	48, 311
Eco57I	CTGAAG	4 cut(s)	1366, 2292, 2556, 3235
Eco88I	CYCGRG	3 cut(s)	306, 392, 2722
Eco91I	GGTNACC	1 cut(s)	1997
EcoICRI	GAGCTC	2 cut(s)	48, 311
EcoO109I	RGGNCCY	1 cut(s)	2119
EcoO65I	GGTNACC	1 cut(s)	1997
EcoRI	GAATTC	1 cut(s)	3425
EcoRII	CCWGG	7 cut(s)	140, 1138, 1361, 1529, 1639, 1834, 2115
EcoRV	GATATC	2 cut(s)	1150, 1792
EcoT14I	CCWWGG	7 cut(s)	225, 768, 836, 922, 1296, 2203, 2353
EcoT22I	ATGCAT	2 cut(s)	2440, 2611
EcoT38I	GRGCYC	5 cut(s)	50, 313, 1362, 2104, 2123
ErhI	CCWWGG	7 cut(s)	225, 768, 836, 922, 1296, 2203, 2353
Esp3I	CGTCTC	1 cut(s)	3298
FaqI	GGGAC	4 cut(s)	498, 1657, 2836, 3001
FauI	CCCGC	3 cut(s)	419, 2091, 2705
FbaI	TGATCA	3 cut(s)	706, 1843, 1933
FblI	GTMKAC	1 cut(s)	2799
Fnu4HI	GCNGC	8 cut(s)	106, 590, 873, 1308, 1832, 2221, 2429, 3006
FriOI	GRGCYC	5 cut(s)	50, 313, 1362, 2104, 2123
Fsp4HI	GCNGC	8 cut(s)	106, 590, 873, 1308, 1832, 2221, 2429, 3006
FspBI	CTAG	8 cut(s)	633, 1220, 1674, 1719, 1764, 2229, 2714, 2945
GluI	GCNGC	8 cut(s)	106, 590, 873, 1308, 1832, 2221, 2429, 3006
GsaI	CCCAGC	1 cut(s)	2381
GsuI	CTGGAG	2 cut(s)	124, 2099
HapII	CCGG	8 cut(s)	120, 363, 393, 516, 715, 1122, 2002, 2403
HgaI	GACGC	1 cut(s)	2403
Hin1I	GRCGYC	1 cut(s)	2395
HincII	GTYRAC	3 cut(s)	666, 1653, 3166
HindII	GTYRAC	3 cut(s)	666, 1653, 3166
HindIII	AAGCTT	2 cut(s)	1244, 1553
HpaII	CCGG	8 cut(s)	120, 363, 393, 516, 715, 1122, 2002, 2403
Hpy99I	CGWCG	1 cut(s)	1509
HpyCH4IV	ACGT	4 cut(s)	1453, 1504, 2602, 2760
HpyF3I	CTNAG	6 cut(s)	881, 1494, 1953, 2254, 2493, 2677
HpySE526I	ACGT	4 cut(s)	1453, 1504, 2602, 2760
Hsp92I	GRCGYC	1 cut(s)	2395
Ksp22I	TGATCA	3 cut(s)	706, 1843, 1933
LguI	GCTCTTC	1 cut(s)	2831
LmnI	GCTCC	3 cut(s)	256, 2337, 3225
Lsp1109I	GCAGC	6 cut(s)	576, 884, 1319, 2207, 2415, 2992
LweI	GCATC	9 cut(s)	391, 475, 509, 955, 1507, 2425, 2447, 2596, 2659
MaeI	CTAG	8 cut(s)	633, 1220, 1674, 1719, 1764, 2229, 2714, 2945
MaeII	ACGT	4 cut(s)	1453, 1504, 2602, 2760
MflI	RGATCY	4 cut(s)	229, 1069, 1168, 1396
MluCI	AATT	9 cut(s)	162, 387, 857, 1091, 1948, 2157, 3171, 3408, 3425
MlyI	GAGTC	5 cut(s)	60, 697, 1505, 1761, 3339
MmeI	TCCRAC	3 cut(s)	294, 2113, 2491
Mph1103I	ATGCAT	2 cut(s)	2440, 2611
MseI	TTAA	7 cut(s)	860, 1074, 1283, 1482, 1709, 3026, 3170
MspA1I	CMGCKG	2 cut(s)	589, 2381
MspI	CCGG	8 cut(s)	120, 363, 393, 516, 715, 1122, 2002, 2403
Mva1269I	GAATGC	4 cut(s)	760, 1669, 1876, 2565
MvaI	CCWGG	7 cut(s)	142, 1140, 1363, 1531, 1641, 1836, 2117
MvnI	CGCG	2 cut(s)	426, 1992
NciI	CCSGG	5 cut(s)	393, 394, 516, 1123, 2403
NcoI	CCATGG	3 cut(s)	225, 836, 1296
NheI	GCTAGC	1 cut(s)	2713
NlaIV	GGNNCC	9 cut(s)	231, 1332, 1398, 1630, 1728, 1864, 2121, 2989, 3227
NmeAIII	GCCGAG	1 cut(s)	48
NmuCI	GTSAC	8 cut(s)	94, 173, 651, 1679, 1997, 2545, 2593, 3080
NsiI	ATGCAT	2 cut(s)	2440, 2611
NspI	RCATGY	1 cut(s)	2252
NspV	TTCGAA	2 cut(s)	2152, 3423
PaeI	GCATGC	1 cut(s)	2252
PagI	TCATGA	4 cut(s)	411, 657, 1980, 3156
PceI	AGGCCT	1 cut(s)	844
PciSI	GCTCTTC	1 cut(s)	2831
PcsI	WCGNNNNNNNCGW	1 cut(s)	804
PctI	GAATGC	4 cut(s)	760, 1669, 1876, 2565
PflMI	CCANNNNNTGG	2 cut(s)	226, 1736
PfoI	TCCNGGA	1 cut(s)	514
PinAI	ACCGGT	1 cut(s)	714
PkrI	GCNGC	8 cut(s)	107, 591, 874, 1309, 1833, 2222, 2430, 3007
PleI	GAGTC	5 cut(s)	60, 696, 1504, 1761, 3339
PpsI	GAGTC	5 cut(s)	60, 696, 1504, 1761, 3339
PshBI	ATTAAT	1 cut(s)	1482
Psp124BI	GAGCTC	2 cut(s)	50, 313
Psp1406I	AACGTT	1 cut(s)	2760
Psp6I	CCWGG	7 cut(s)	140, 1138, 1361, 1529, 1639, 1834, 2115
PspEI	GGTNACC	1 cut(s)	1997
PspFI	CCCAGC	1 cut(s)	2377
PspGI	CCWGG	7 cut(s)	140, 1138, 1361, 1529, 1639, 1834, 2115
PspN4I	GGNNCC	9 cut(s)	231, 1332, 1398, 1630, 1728, 1864, 2121, 2989, 3227
PspOMI	GGGCCC	1 cut(s)	2119
PspPI	GGNCC	6 cut(s)	765, 1863, 1907, 2119, 2120, 2988
PstI	CTGCAG	2 cut(s)	874, 1168
PstNI	CAGNNNCTG	3 cut(s)	2220, 2534, 3258
PsuI	RGATCY	4 cut(s)	229, 1069, 1168, 1396
PvuII	CAGCTG	1 cut(s)	2381
RsaI	GTAC	3 cut(s)	533, 2351, 3400
RsaNI	GTAC	3 cut(s)	532, 2350, 3399
SacI	GAGCTC	2 cut(s)	50, 313
SapI	GCTCTTC	1 cut(s)	2831
SaqAI	TTAA	7 cut(s)	860, 1074, 1283, 1482, 1709, 3026, 3170
SatI	GCNGC	8 cut(s)	106, 590, 873, 1308, 1832, 2221, 2429, 3006
Sau96I	GGNCC	6 cut(s)	765, 1863, 1907, 2119, 2120, 2988
SchI	GAGTC	5 cut(s)	60, 697, 1505, 1761, 3339
SfaNI	GCATC	9 cut(s)	391, 475, 509, 955, 1507, 2425, 2447, 2596, 2659
SfcI	CTRYAG	6 cut(s)	870, 889, 1065, 1164, 1752, 2670
SfuI	TTCGAA	2 cut(s)	2152, 3423
SinI	GGWCC	1 cut(s)	2988
SmaI	CCCGGG	1 cut(s)	394
SmlI	CTYRAG	2 cut(s)	2287, 2918
SmoI	CTYRAG	2 cut(s)	2287, 2918
SphI	GCATGC	1 cut(s)	2252
Sse9I	AATT	9 cut(s)	162, 387, 857, 1091, 1948, 2157, 3171, 3408, 3425
SseBI	AGGCCT	1 cut(s)	844
SspI	AATATT	1 cut(s)	903
SspMI	CTAG	8 cut(s)	633, 1220, 1674, 1719, 1764, 2229, 2714, 2945
SstI	GAGCTC	2 cut(s)	50, 313
StuI	AGGCCT	1 cut(s)	844
StyI	CCWWGG	7 cut(s)	225, 768, 836, 922, 1296, 2203, 2353
TaiI	ACGT	4 cut(s)	1456, 1507, 2605, 2763
TasI	AATT	9 cut(s)	162, 387, 857, 1091, 1948, 2157, 3171, 3408, 3425
TatI	WGTACW	1 cut(s)	531
TauI	GCSGC	2 cut(s)	108, 1834
Tru1I	TTAA	7 cut(s)	860, 1074, 1283, 1482, 1709, 3026, 3170
Tru9I	TTAA	7 cut(s)	860, 1074, 1283, 1482, 1709, 3026, 3170
TseFI	GTSAC	8 cut(s)	94, 173, 651, 1679, 1997, 2545, 2593, 3080
TseI	GCWGC	6 cut(s)	589, 872, 1307, 2220, 2428, 3005
Tsp45I	GTSAC	8 cut(s)	94, 173, 651, 1679, 1997, 2545, 2593, 3080
TspGWI	ACGGA	2 cut(s)	868, 2651
TspMI	CCCGGG	1 cut(s)	392
Van91I	CCANNNNNTGG	2 cut(s)	226, 1736
VneI	GTGCAC	2 cut(s)	194, 1275
VpaK11BI	GGWCC	1 cut(s)	2988
VspI	ATTAAT	1 cut(s)	1482
XapI	RAATTY	2 cut(s)	1091, 3425
XbaI	TCTAGA	1 cut(s)	632
XceI	RCATGY	1 cut(s)	2252
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3295
XmaI	CCCGGG	1 cut(s)	392
XmiI	GTMKAC	1 cut(s)	2799
XspI	CTAG	8 cut(s)	633, 1220, 1674, 1719, 1764, 2229, 2714, 2945
Zsp2I	ATGCAT	2 cut(s)	2440, 2611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.