MD02G1107900.v1.1

AT-rich interactive domain-containing protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
8717531 .. 8722393
4863 bp
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UTR
Exon/CDS
Intron
MD02G1107900.v1.1.491

Sequence Viewer

Length: 1614 bp
ATGAGTGATACCGAAGAGAAGGATGAAACTGGACAAGAATTGCCAGTTGATGCTTTAAATAATGGGAAACCGGAAAATGATCATAACAAGCAGAATAATTCTCCGAATTCAGGAGATTCTGGACCGGTTCAGGAGACCCCGAATCCTCCTGCTGAAAATGGCGAAACTCTACCCGTTAAGACAGACGTTGAGATGACAACTGATGAGAAAACTAGTGTAGAAGTAGAACCACAGTCCATTTCACACCAATCTGGTCAAAATTTGCCTTCTCCTTCAGTCACAATAAATTGCGGGGACGAACAATTAGTTAAGCCAGATACTGAAGCCTTACAGGATGAGGATGAACAATTAGTCAAGCCAGGTACTAAACCCGTAGCTGATACCAAGAGTGCTGAAGCCCAGGATTTGCCTCAAAGTAATAATCATGGTCGTGATGATGACAACGCTGTTTCCACAAGTCTTCCAGAGACTGTTAAAACTGAAGTTACTCAAGTGCCGGAGCAGGAATCTGGTGGTGCTGCTGAAGAAAGTGTAACTGTGGGTCATAAGGAACCTGTTACGCCTCATGCCGGATCTTCTGATGTAAAAGCTGATTCTGGGAATGGGAAAGAATTGAAGAATAAGGTGGATGAAAAAGATATTACTACACCCAAAAATAATGGAACCTCAAACTCAAAGGGCATGTTCCTTTTAGATGAGAGTGACGTGTATGAAGGTAATGATTCTGGGACAGAAGAGGAGCAATCAGCTTTCATGAAGGAAGTGGAAAATTTCTTTAAGGAGAGGAGCATGGAATTGAAACCTCCAAAGTTTTATGGAGAGGGTTTGAATTGCCTTAAGCTTTGGAGAGGTGTGATCAGATTGGGTGGCTATGATAAGGTGACCTCAAATAAGTTGTGGCGGCAAGTGGGAGAAGCCTTTAAACCTCCAAAGACATGCACTACGGTTTCATGGACATTTCGAGGTTTCTATGAGAAGGCACTGCTAGATTATGAAAGGCATAAATTTGGTACTGAACCACCAATCTCTTCCCAGCCAGAGCCTATGAATATCGATAACCAGGCTGCAGGATCAGGTCGAGCAAGAAGGGATGCTGCGGCACGTGCCATGCAGGGTTGGCACTCACAACGTATCACTGGGAATGGTGAAGTCAGTGACCCTATCATAAAGGATAAAAATGCAAATTCTTTGCAAAAGCGTGAAAAACAGCTTAAAAGCATCGGTTCACTTAAAAGAAAGAAGCCACCTTATGTGGAGCATGTGGTAAAAGCTGCACGTACTAAAGCATCTAAGTTGCAATTGGATGTAGATGTGGTTGATCTTGGACCTCCAGCGGATTGGGTGAAGATCAATGTGCAGAGAACTAAAGATTGTTTTGAGGTATATGCTTTAGTTCCAGGTCTTCTACGGGAGGAGGTTCGTGTTCAATCTGATCCCGCTGGGCGATTGGTTATAACTGGAGAACCTGAGCATCCTGATAATCCATGGGGTGTCACAGCTTTCAAAAAGGCTGTCACCTTACCATCAAGAATTGATCCGCACCAGACATCAGCCGTGGTCACCCTGCACGGTCAGTTGTTTGTTCGTGTTCCATTTGAGCAGTCGGATCAGTAG

Protein Analysis

538

Amino Acids

58.99

Weight (kDa)

5.06

Isoelectric Point (pI)

42.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARID PF01388 248 - 332 7.9e-19 ARID/BRIGHT DNA binding domain
HSP20 PF00011 453 - 535 9.6e-06 Hsp20/alpha crystallin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1454
AciI CCGC 6 cut(s) 291, 901, 1097, 1334, 1437, 1538
AclWI GGATC 4 cut(s) 580, 1078, 1427, 1529
AcsI RAATTY 5 cut(s) 106, 259, 769, 1004, 1183
AcuI CTGAAG 5 cut(s) 258, 342, 414, 501, 543
AcvI CACGTG 1 cut(s) 1103
AfaI GTAC 3 cut(s) 364, 1012, 1279
AfiI CCNNNNNNNGG 2 cut(s) 110, 569
AflII CTTAAG 1 cut(s) 836
AflIII ACRYGT 1 cut(s) 705
AgeI ACCGGT 1 cut(s) 124
AgsI TTSAA 5 cut(s) 616, 799, 829, 1427, 1504
AhlI ACTAGT 1 cut(s) 212
AjiI CACGTC 1 cut(s) 706
AjnI CCWGG 4 cut(s) 358, 399, 1059, 1396
AluBI AGCT 7 cut(s) 377, 590, 749, 841, 1210, 1271, 1499
AluI AGCT 7 cut(s) 377, 590, 749, 841, 1210, 1271, 1499
Alw26I GTCTC 2 cut(s) 128, 461
AlwI GGATC 4 cut(s) 580, 1078, 1427, 1529
AlwNI CAGNNNCTG 2 cut(s) 320, 470
ApeKI GCWGC 4 cut(s) 518, 1064, 1094, 1271
ApoI RAATTY 5 cut(s) 106, 259, 769, 1004, 1183
ArsI GACNNNNNNTTYG 2 cut(s) 1497, 1529
AsiGI ACCGGT 1 cut(s) 124
AspS9I GGNCC 2 cut(s) 122, 1325
AsuHPI GGTGA 5 cut(s) 892, 1157, 1354, 1507, 1552
AvaII GGWCC 2 cut(s) 122, 1325
BbrPI CACGTG 1 cut(s) 1103
BbsI GAAGAC 2 cut(s) 452, 1394
BbvI GCAGC 4 cut(s) 505, 1051, 1081, 1258
BccI CCATC 1 cut(s) 1531
BceAI ACGGC 1 cut(s) 1538
BciT130I CCWGG 4 cut(s) 360, 401, 1061, 1398
BclI TGATCA 2 cut(s) 79, 855
BcoDI GTCTC 2 cut(s) 128, 461
BcuI ACTAGT 1 cut(s) 212
BfaI CTAG 2 cut(s) 213, 986
BfmI CTRYAG 1 cut(s) 1065
BfrI CTTAAG 1 cut(s) 836
BisI GCNGC 6 cut(s) 519, 902, 1065, 1095, 1098, 1272
BlsI GCNGC 6 cut(s) 520, 903, 1066, 1096, 1099, 1273
Bme1390I CCNGG 4 cut(s) 360, 401, 1061, 1398
Bme18I GGWCC 2 cut(s) 122, 1325
BmgBI CACGTC 1 cut(s) 706
BmgT120I GGNCC 2 cut(s) 122, 1325
BmiI GGNNCC 2 cut(s) 552, 664
BmrFI CCNGG 4 cut(s) 360, 401, 1061, 1398
BmrI ACTGGG 1 cut(s) 1146
BmsI GCATC 5 cut(s) 40, 1081, 1227, 1295, 1480
BmuI ACTGGG 1 cut(s) 1146
BpiI GAAGAC 2 cut(s) 452, 1394
BpmI CTGGAG 2 cut(s) 1314, 1479
Bpu10I CCTNAGC 1 cut(s) 1467
BpuEI CTTGAG 1 cut(s) 474
Bsa29I ATCGAT 1 cut(s) 1053
BsaAI YACGTR 2 cut(s) 1103, 1277
BsaI GGTCTC 1 cut(s) 128
BsaJI CCNNGG 3 cut(s) 399, 1484, 1554
BsaWI WCCGGW 2 cut(s) 70, 124
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 569
Bse118I RCCGGY 1 cut(s) 124
Bse1I ACTGG 4 cut(s) 34, 44, 1141, 1462
BseBI CCWGG 4 cut(s) 360, 401, 1061, 1398
BseCI ATCGAT 1 cut(s) 1053
BseDI CCNNGG 3 cut(s) 399, 1484, 1554
BseGI GGATG 7 cut(s) 28, 340, 346, 634, 1096, 1309, 1471
BseLI CCNNNNNNNGG 2 cut(s) 110, 569
BseMII CTCAG 1 cut(s) 1458
BseNI ACTGG 4 cut(s) 34, 44, 1141, 1462
BseRI GAGGAG 3 cut(s) 752, 799, 1427
BseXI GCAGC 4 cut(s) 505, 1051, 1081, 1258
BseYI CCCAGC 2 cut(s) 1032, 1439
BsgI GTGCAG 3 cut(s) 1257, 1376, 1550
BshTI ACCGGT 1 cut(s) 124
BshVI ATCGAT 1 cut(s) 1053
BsiSI CCGG 4 cut(s) 71, 125, 497, 570
BslFI GGGAC 2 cut(s) 308, 742
BslI CCNNNNNNNGG 2 cut(s) 110, 569
BsmAI GTCTC 2 cut(s) 128, 461
BsmFI GGGAC 2 cut(s) 308, 742
Bso31I GGTCTC 1 cut(s) 128
Bsp143I GATC 9 cut(s) 79, 572, 855, 1070, 1318, 1347, 1432, 1534, 1606
Bsp19I CCATGG 1 cut(s) 1484
BspACI CCGC 6 cut(s) 291, 901, 1097, 1334, 1437, 1538
BspCNI CTCAG 1 cut(s) 1459
BspDI ATCGAT 1 cut(s) 1053
BspHI TCATGA 1 cut(s) 753
BspLI GGNNCC 2 cut(s) 552, 664
BspMAI CTGCAG 1 cut(s) 1069
BspPI GGATC 4 cut(s) 580, 1078, 1427, 1529
BspTI CTTAAG 1 cut(s) 836
BspTNI GGTCTC 1 cut(s) 128
BsrFI RCCGGY 1 cut(s) 124
BsrI ACTGG 4 cut(s) 34, 44, 1141, 1462
BssAI RCCGGY 1 cut(s) 124
BssECI CCNNGG 3 cut(s) 399, 1484, 1554
BssMI GATC 9 cut(s) 79, 572, 855, 1070, 1318, 1347, 1432, 1534, 1606
BssT1I CCWWGG 1 cut(s) 1484
Bst2UI CCWGG 4 cut(s) 360, 401, 1061, 1398
Bst4CI ACNGT 5 cut(s) 234, 472, 538, 946, 1571
Bst6I CTCTTC 3 cut(s) 9, 729, 1033
BstAFI CTTAAG 1 cut(s) 836
BstBAI YACGTR 2 cut(s) 1103, 1277
BstDEI CTNAG 2 cut(s) 1290, 1467
BstDSI CCRYGG 2 cut(s) 1484, 1554
BstEII GGTNACC 2 cut(s) 880, 1558
BstF5I GGATG 7 cut(s) 28, 340, 346, 634, 1096, 1309, 1471
BstKTI GATC 9 cut(s) 82, 575, 858, 1073, 1321, 1350, 1435, 1537, 1609
BstMAI GTCTC 2 cut(s) 128, 461
BstMBI GATC 9 cut(s) 79, 572, 855, 1070, 1318, 1347, 1432, 1534, 1606
BstMWI GCNNNNNNNGC 2 cut(s) 1103, 1117
BstNI CCWGG 4 cut(s) 360, 401, 1061, 1398
BstNSI RCATGY 3 cut(s) 685, 939, 1262
BstPI GGTNACC 2 cut(s) 880, 1558
BstSCI CCNGG 4 cut(s) 358, 399, 1059, 1396
BstSFI CTRYAG 1 cut(s) 1065
BstV1I GCAGC 4 cut(s) 505, 1051, 1081, 1258
BstV2I GAAGAC 2 cut(s) 452, 1394
BstX2I RGATCY 1 cut(s) 572
BstXI CCANNNNNNTGG 1 cut(s) 1338
BstYI RGATCY 1 cut(s) 572
Bsu15I ATCGAT 1 cut(s) 1053
BsuTUI ATCGAT 1 cut(s) 1053
BtgI CCRYGG 2 cut(s) 1484, 1554
BtrI CACGTC 1 cut(s) 706
BtsCI GGATG 7 cut(s) 28, 340, 346, 634, 1096, 1309, 1471
BtsI GCAGTG 1 cut(s) 980
BtsIMutI CAGTG 3 cut(s) 980, 1134, 1159
CaiI CAGNNNCTG 2 cut(s) 320, 470
CciI TCATGA 1 cut(s) 753
Cfr10I RCCGGY 1 cut(s) 124
Cfr13I GGNCC 2 cut(s) 122, 1325
ClaI ATCGAT 1 cut(s) 1053
Csp6I GTAC 3 cut(s) 363, 1011, 1278
CspAI ACCGGT 1 cut(s) 124
CviQI GTAC 3 cut(s) 363, 1011, 1278
DdeI CTNAG 2 cut(s) 1290, 1467
DpnI GATC 9 cut(s) 81, 574, 857, 1072, 1320, 1349, 1434, 1536, 1608
DpnII GATC 9 cut(s) 79, 572, 855, 1070, 1318, 1347, 1432, 1534, 1606
DraI TTTAAA 2 cut(s) 57, 922
Eam1104I CTCTTC 3 cut(s) 9, 729, 1033
EarI CTCTTC 3 cut(s) 9, 729, 1033
Eco130I CCWWGG 1 cut(s) 1484
Eco31I GGTCTC 1 cut(s) 128
Eco47I GGWCC 2 cut(s) 122, 1325
Eco57I CTGAAG 5 cut(s) 258, 342, 414, 501, 543
Eco72I CACGTG 1 cut(s) 1103
Eco91I GGTNACC 2 cut(s) 880, 1558
EcoO65I GGTNACC 2 cut(s) 880, 1558
EcoRI GAATTC 1 cut(s) 106
EcoRII CCWGG 4 cut(s) 358, 399, 1059, 1396
EcoT14I CCWWGG 1 cut(s) 1484
ErhI CCWWGG 1 cut(s) 1484
FaqI GGGAC 2 cut(s) 308, 742
FauI CCCGC 2 cut(s) 284, 1444
FbaI TGATCA 2 cut(s) 79, 855
Fnu4HI GCNGC 6 cut(s) 519, 902, 1065, 1095, 1098, 1272
FokI GGATG 7 cut(s) 35, 347, 353, 641, 1103, 1316, 1458
Fsp4HI GCNGC 6 cut(s) 519, 902, 1065, 1095, 1098, 1272
FspBI CTAG 2 cut(s) 213, 986
GluI GCNGC 6 cut(s) 519, 902, 1065, 1095, 1098, 1272
GsaI CCCAGC 2 cut(s) 1036, 1443
GsuI CTGGAG 2 cut(s) 1314, 1479
HapII CCGG 4 cut(s) 71, 125, 497, 570
HindIII AAGCTT 1 cut(s) 839
HinfI GANTC 5 cut(s) 116, 142, 506, 593, 722
HpaII CCGG 4 cut(s) 71, 125, 497, 570
HphI GGTGA 5 cut(s) 892, 1157, 1354, 1507, 1552
Hpy166II GTNNAC 1 cut(s) 1226
Hpy188I TCNGA 5 cut(s) 105, 580, 860, 1432, 1606
Hpy188III TCNNGA 8 cut(s) 111, 120, 131, 431, 464, 754, 1475, 1527
Hpy8I GTNNAC 1 cut(s) 1226
HpyAV CCTTC 7 cut(s) 13, 276, 282, 707, 751, 970, 1080
HpyCH4III ACNGT 5 cut(s) 234, 472, 538, 946, 1571
HpyCH4IV ACGT 5 cut(s) 186, 705, 1102, 1129, 1276
HpyCH4V TGCA 9 cut(s) 939, 1067, 1111, 1181, 1192, 1274, 1297, 1357, 1567
HpyF10VI GCNNNNNNNGC 2 cut(s) 1103, 1117
HpyF3I CTNAG 2 cut(s) 1290, 1467
HpySE526I ACGT 5 cut(s) 186, 705, 1102, 1129, 1276
Ksp22I TGATCA 2 cut(s) 79, 855
Kzo9I GATC 9 cut(s) 79, 572, 855, 1070, 1318, 1347, 1432, 1534, 1606
LmnI GCTCC 4 cut(s) 499, 739, 786, 1255
Lsp1109I GCAGC 4 cut(s) 505, 1051, 1081, 1258
LweI GCATC 5 cut(s) 40, 1081, 1227, 1295, 1480
MaeI CTAG 2 cut(s) 213, 986
MaeII ACGT 5 cut(s) 186, 705, 1102, 1129, 1276
MalI GATC 9 cut(s) 81, 574, 857, 1072, 1320, 1349, 1434, 1536, 1608
MboI GATC 9 cut(s) 79, 572, 855, 1070, 1318, 1347, 1432, 1534, 1606
MboII GAAGA 9 cut(s) 26, 452, 536, 567, 628, 746, 1020, 1357, 1394
MfeI CAATTG 1 cut(s) 1298
MflI RGATCY 1 cut(s) 572
MmeI TCCRAC 1 cut(s) 1584
MseI TTAA 9 cut(s) 56, 177, 309, 474, 777, 837, 921, 1212, 1230
MslI CAYNNNNRTG 1 cut(s) 429
MspA1I CMGCKG 2 cut(s) 1334, 1439
MspCI CTTAAG 1 cut(s) 836
MspI CCGG 4 cut(s) 71, 125, 497, 570
MspR9I CCNGG 4 cut(s) 360, 401, 1061, 1398
MunI CAATTG 1 cut(s) 1298
MvaI CCWGG 4 cut(s) 360, 401, 1061, 1398
MwoI GCNNNNNNNGC 2 cut(s) 1103, 1117
NcoI CCATGG 1 cut(s) 1484
NdeII GATC 9 cut(s) 79, 572, 855, 1070, 1318, 1347, 1432, 1534, 1606
NlaIV GGNNCC 2 cut(s) 552, 664
NmuCI GTSAC 7 cut(s) 277, 701, 880, 1154, 1492, 1513, 1558
NspI RCATGY 3 cut(s) 685, 939, 1262
PagI TCATGA 1 cut(s) 753
PfeI GAWTC 5 cut(s) 116, 142, 506, 593, 722
PinAI ACCGGT 1 cut(s) 124
PkrI GCNGC 6 cut(s) 520, 903, 1066, 1096, 1099, 1273
PmaCI CACGTG 1 cut(s) 1103
PmlI CACGTG 1 cut(s) 1103
Ppu21I YACGTR 2 cut(s) 1103, 1277
PsiI TTATAA 1 cut(s) 1454
Psp6I CCWGG 4 cut(s) 358, 399, 1059, 1396
PspCI CACGTG 1 cut(s) 1103
PspEI GGTNACC 2 cut(s) 880, 1558
PspFI CCCAGC 2 cut(s) 1032, 1439
PspGI CCWGG 4 cut(s) 358, 399, 1059, 1396
PspN4I GGNNCC 2 cut(s) 552, 664
PspPI GGNCC 2 cut(s) 122, 1325
PstI CTGCAG 1 cut(s) 1069
PstNI CAGNNNCTG 2 cut(s) 320, 470
PsuI RGATCY 1 cut(s) 572
RsaI GTAC 3 cut(s) 364, 1012, 1279
RsaNI GTAC 3 cut(s) 363, 1011, 1278
RseI CAYNNNNRTG 1 cut(s) 429
SaqAI TTAA 9 cut(s) 56, 177, 309, 474, 777, 837, 921, 1212, 1230
SatI GCNGC 6 cut(s) 519, 902, 1065, 1095, 1098, 1272
Sau3AI GATC 9 cut(s) 79, 572, 855, 1070, 1318, 1347, 1432, 1534, 1606
Sau96I GGNCC 2 cut(s) 122, 1325
ScrFI CCNGG 4 cut(s) 360, 401, 1061, 1398
SfaNI GCATC 5 cut(s) 40, 1081, 1227, 1295, 1480
SfcI CTRYAG 1 cut(s) 1065
SinI GGWCC 2 cut(s) 122, 1325
SmiMI CAYNNNNRTG 1 cut(s) 429
SmlI CTYRAG 2 cut(s) 489, 836
SmoI CTYRAG 2 cut(s) 489, 836
SpeI ACTAGT 1 cut(s) 212
SsiI CCGC 6 cut(s) 291, 901, 1097, 1334, 1437, 1538
SspMI CTAG 2 cut(s) 213, 986
StyD4I CCNGG 4 cut(s) 358, 399, 1059, 1396
StyI CCWWGG 1 cut(s) 1484
TaaI ACNGT 5 cut(s) 234, 472, 538, 946, 1571
TaiI ACGT 5 cut(s) 189, 708, 1105, 1132, 1279
TaqI TCGA 3 cut(s) 961, 1053, 1078
TauI GCSGC 2 cut(s) 904, 1100
TfiI GAWTC 5 cut(s) 116, 142, 506, 593, 722
Tru1I TTAA 9 cut(s) 56, 177, 309, 474, 777, 837, 921, 1212, 1230
Tru9I TTAA 9 cut(s) 56, 177, 309, 474, 777, 837, 921, 1212, 1230
TscAI CASTG 3 cut(s) 987, 1141, 1159
TseFI GTSAC 7 cut(s) 277, 701, 880, 1154, 1492, 1513, 1558
TseI GCWGC 4 cut(s) 518, 1064, 1094, 1271
Tsp45I GTSAC 7 cut(s) 277, 701, 880, 1154, 1492, 1513, 1558
TspDTI ATGAA 9 cut(s) 39, 357, 645, 726, 742, 770, 939, 1008, 1061
TspRI CASTG 3 cut(s) 987, 1141, 1159
Vha464I CTTAAG 1 cut(s) 836
VpaK11BI GGWCC 2 cut(s) 122, 1325
XapI RAATTY 5 cut(s) 106, 259, 769, 1004, 1183
XceI RCATGY 3 cut(s) 685, 939, 1262
XspI CTAG 2 cut(s) 213, 986
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.