pycom02g08670

AT-rich interactive domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Forward (+)
5994912 .. 5999177
4266 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g08670.8

Sequence Viewer

Length: 1659 bp
ATGAGTGCAAAGTTTACTGCTTTTATACTTAGGAAAATGAGTGATACTGAAGAGAAGGATGAAATTGGACAAGAATTGCCAGTTGATGCTTTAAATAATGGGAAACCGGAAAATGATCACAAGAAGCAGAATAATTCTCCGAATTCTGGAGATTCTGGACCGGTTCAGGAGACCCCGAATCCTGCTGAAAATGGCGAAACTCTACCCGTTAAGACAGACGTTGAGATGACCATTGATGATAAAACTAGTGTAGAAGTAGAACCACAGTCCATTTCACACCAATCTGGTCAAAATTTGCCTTCTTCTTCAGTCACAATAAATTGCGGGGACGAACAATTAGTCAAGCCAGATACTGAAGCCTTACAGGATGAGGATGAACAATTAGTCAAGCCAGGTACTAAACCCGTAGCTGATACCAAGAGTGCTGAAGCCCAGGATTTGCCTCAAAGTAATAATCATGGTCGTGATGATGACAACGCTGTTTCCACAAGTCTTCTCGAGACTGTTAAACCTACTGTTAAAGCTGAAGTTACTCAAGTGCCGGAGCAGGAATCTGGTGCTGCTGCTGAAGAAAGTGTAACTGTGGGTCATAAGGAACCTGTTACGCCTCATGCCGGATCTTCTAATGTAAAAGCTGATTCTGGGAGTGGGGAAGAATTGAAGAATAAGGTGGATGAAAAAGATATTACTACACCCAAAAATAATGGAACCCCAAACTCAAAGGGCATGTTCCTTTTAGATGACAGCGACATGTATGAAGGTAATGATTCTGGGACAGAAGAGGAGCAATCAGCTTTCATGAAGGAAGTGGAAAATTTCTTTAAGCAGAGGAGCATGGATTTGAAACCTCCGAAGTTTTATGGAGAGGGTTTGAATTGCCTTAAGCTTTGGAGAGGTGTGATCAGATTGGGTGGCTATGATAAGGTGACCTCAAATAAGTTGTGGCGGCAAGTGGGAGAAGCCTTTAGACCTCCAAAGACATGCACTACGGTTTCATGGACATTTCGAGGTTTTTATGAGAAGGCACTCCTAGATTATGAAAGGCATAAATTTGGTACTGAACCGCCAATCTCTTCCCAGCCAGAGCCTATGAATGTTGATAACCAGGCTGCAGGATCAGGTCGAGCAAGAAGGGATGCTGCGGCACGTGCCATGCAGGGTTGGCACTCACAACGTATCACTGGGAATGGTGAAGTCAGTGACCCTATCATAAAGGATAAAAATGCAAATTCGTTGCATAAGCGTGAAAAACAGCTTAAAAGCATCGGTTCACTTAAAAGAAAGAAGCCACCTTATGTGGAGCATGTGGTAAAAGCTGCACGTACTAAAGCATCTAAGTTGCAATTGGATGTAGATGTGGTTGATCTTGGACCTCCAGCGGATTGGGTGAAGATCAATGTGCAGAGAACTAAAGATTGTTTTGAGGTCTATGCTTTAGTTCCAGGGCTTCTACGGGAGGAGGTGCGTGTTCAATCCGATCCAGCTGGGCGGTTGGTTATAACTGGAGAACCTGAGCATCCTGATAATCCATGGGGTGTCACAGCTTTCAAAAAGGCTGTCACCTTACCATCAAGAATTGATCCACACCAGACATCAGCCGTGGTCACCCTGCACGGTCAGTTGTTTGTTCGTGTTCCATTTGAGCAGTCGGATCAGTAG

Protein Analysis

553

Amino Acids

60.73

Weight (kDa)

5.29

Isoelectric Point (pI)

43.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1499
AciI CCGC 6 cut(s) 324, 946, 1064, 1142, 1379, 1489
AclWI GGATC 4 cut(s) 625, 1123, 1472, 1574
AcsI RAATTY 5 cut(s) 142, 292, 814, 1049, 1228
AcuI CTGAAG 6 cut(s) 69, 291, 375, 447, 546, 588
AcvI CACGTG 1 cut(s) 1148
AfaI GTAC 3 cut(s) 397, 1057, 1324
AfiI CCNNNNNNNGG 2 cut(s) 146, 614
AflII CTTAAG 1 cut(s) 881
AflIII ACRYGT 1 cut(s) 750
AgeI ACCGGT 1 cut(s) 160
AgsI TTSAA 5 cut(s) 661, 844, 874, 1472, 1549
AhlI ACTAGT 1 cut(s) 245
AjnI CCWGG 4 cut(s) 391, 432, 1104, 1441
AluBI AGCT 9 cut(s) 410, 524, 635, 794, 886, 1255, 1316, 1484, 1544
AluI AGCT 9 cut(s) 410, 524, 635, 794, 886, 1255, 1316, 1484, 1544
Alw26I GTCTC 2 cut(s) 164, 494
AlwI GGATC 4 cut(s) 625, 1123, 1472, 1574
AlwNI CAGNNNCTG 1 cut(s) 353
Ama87I CYCGRG 1 cut(s) 497
ApeKI GCWGC 5 cut(s) 560, 563, 1109, 1139, 1316
ApoI RAATTY 5 cut(s) 142, 292, 814, 1049, 1228
ArsI GACNNNNNNTTYG 4 cut(s) 324, 356, 1542, 1574
AsiGI ACCGGT 1 cut(s) 160
AspS9I GGNCC 2 cut(s) 158, 1370
AsuHPI GGTGA 5 cut(s) 937, 1202, 1399, 1552, 1597
AvaI CYCGRG 1 cut(s) 497
AvaII GGWCC 2 cut(s) 158, 1370
BbrPI CACGTG 1 cut(s) 1148
BbsI GAAGAC 1 cut(s) 485
BbvI GCAGC 5 cut(s) 547, 550, 1096, 1126, 1303
BccI CCATC 1 cut(s) 1576
BceAI ACGGC 1 cut(s) 1583
BciT130I CCWGG 4 cut(s) 393, 434, 1106, 1443
BclI TGATCA 2 cut(s) 115, 900
BcoDI GTCTC 2 cut(s) 164, 494
BcuI ACTAGT 1 cut(s) 245
BfaI CTAG 2 cut(s) 246, 1031
BfmI CTRYAG 1 cut(s) 1110
BfrI CTTAAG 1 cut(s) 881
BisI GCNGC 7 cut(s) 561, 564, 947, 1110, 1140, 1143, 1317
BlsI GCNGC 7 cut(s) 562, 565, 948, 1111, 1141, 1144, 1318
Bme1390I CCNGG 4 cut(s) 393, 434, 1106, 1443
Bme18I GGWCC 2 cut(s) 158, 1370
BmeT110I CYCGRG 1 cut(s) 497
BmgT120I GGNCC 2 cut(s) 158, 1370
BmiI GGNNCC 2 cut(s) 597, 709
BmrFI CCNGG 4 cut(s) 393, 434, 1106, 1443
BmrI ACTGGG 1 cut(s) 1191
BmsI GCATC 5 cut(s) 76, 1126, 1272, 1340, 1525
BmuI ACTGGG 1 cut(s) 1191
BpiI GAAGAC 1 cut(s) 485
BpmI CTGGAG 3 cut(s) 168, 1359, 1524
Bpu10I CCTNAGC 1 cut(s) 1512
BpuEI CTTGAG 1 cut(s) 519
BsaAI YACGTR 2 cut(s) 1148, 1322
BsaI GGTCTC 1 cut(s) 164
BsaJI CCNNGG 4 cut(s) 432, 1442, 1529, 1599
BsaWI WCCGGW 2 cut(s) 106, 160
Bsc4I CCNNNNNNNGG 2 cut(s) 146, 614
Bse118I RCCGGY 1 cut(s) 160
Bse1I ACTGG 3 cut(s) 80, 1186, 1507
BseBI CCWGG 4 cut(s) 393, 434, 1106, 1443
BseDI CCNNGG 4 cut(s) 432, 1442, 1529, 1599
BseGI GGATG 7 cut(s) 64, 373, 379, 679, 1141, 1354, 1516
BseLI CCNNNNNNNGG 2 cut(s) 146, 614
BseMII CTCAG 1 cut(s) 1503
BseNI ACTGG 3 cut(s) 80, 1186, 1507
BseRI GAGGAG 3 cut(s) 797, 844, 1472
BseXI GCAGC 5 cut(s) 547, 550, 1096, 1126, 1303
BseYI CCCAGC 2 cut(s) 1077, 1484
BsgI GTGCAG 3 cut(s) 1302, 1421, 1595
BshTI ACCGGT 1 cut(s) 160
BsiHKCI CYCGRG 1 cut(s) 497
BsiSI CCGG 4 cut(s) 107, 161, 542, 615
BslFI GGGAC 2 cut(s) 341, 787
BslI CCNNNNNNNGG 2 cut(s) 146, 614
BsmAI GTCTC 2 cut(s) 164, 494
BsmFI GGGAC 2 cut(s) 341, 787
Bso31I GGTCTC 1 cut(s) 164
BsoBI CYCGRG 1 cut(s) 497
Bsp143I GATC 9 cut(s) 115, 617, 900, 1115, 1363, 1392, 1477, 1579, 1651
Bsp19I CCATGG 1 cut(s) 1529
BspACI CCGC 6 cut(s) 324, 946, 1064, 1142, 1379, 1489
BspCNI CTCAG 1 cut(s) 1504
BspHI TCATGA 1 cut(s) 798
BspLI GGNNCC 2 cut(s) 597, 709
BspMAI CTGCAG 1 cut(s) 1114
BspPI GGATC 4 cut(s) 625, 1123, 1472, 1574
BspTI CTTAAG 1 cut(s) 881
BspTNI GGTCTC 1 cut(s) 164
BsrFI RCCGGY 1 cut(s) 160
BsrI ACTGG 3 cut(s) 80, 1186, 1507
BssAI RCCGGY 1 cut(s) 160
BssECI CCNNGG 4 cut(s) 432, 1442, 1529, 1599
BssMI GATC 9 cut(s) 115, 617, 900, 1115, 1363, 1392, 1477, 1579, 1651
BssT1I CCWWGG 1 cut(s) 1529
Bst2UI CCWGG 4 cut(s) 393, 434, 1106, 1443
Bst4CI ACNGT 6 cut(s) 267, 505, 517, 583, 991, 1616
Bst6I CTCTTC 3 cut(s) 45, 774, 1078
BstAFI CTTAAG 1 cut(s) 881
BstBAI YACGTR 2 cut(s) 1148, 1322
BstDEI CTNAG 3 cut(s) 29, 1335, 1512
BstDSI CCRYGG 2 cut(s) 1529, 1599
BstEII GGTNACC 2 cut(s) 925, 1603
BstF5I GGATG 7 cut(s) 64, 373, 379, 679, 1141, 1354, 1516
BstKTI GATC 9 cut(s) 118, 620, 903, 1118, 1366, 1395, 1480, 1582, 1654
BstMAI GTCTC 2 cut(s) 164, 494
BstMBI GATC 9 cut(s) 115, 617, 900, 1115, 1363, 1392, 1477, 1579, 1651
BstMWI GCNNNNNNNGC 2 cut(s) 1148, 1162
BstNI CCWGG 4 cut(s) 393, 434, 1106, 1443
BstNSI RCATGY 4 cut(s) 730, 754, 984, 1307
BstPI GGTNACC 2 cut(s) 925, 1603
BstSCI CCNGG 4 cut(s) 391, 432, 1104, 1441
BstSFI CTRYAG 1 cut(s) 1110
BstV1I GCAGC 5 cut(s) 547, 550, 1096, 1126, 1303
BstV2I GAAGAC 1 cut(s) 485
BstX2I RGATCY 1 cut(s) 617
BstXI CCANNNNNNTGG 1 cut(s) 1383
BstYI RGATCY 1 cut(s) 617
BtgI CCRYGG 2 cut(s) 1529, 1599
BtsCI GGATG 7 cut(s) 64, 373, 379, 679, 1141, 1354, 1516
BtsIMutI CAGTG 2 cut(s) 1179, 1204
CaiI CAGNNNCTG 1 cut(s) 353
CciI TCATGA 1 cut(s) 798
Cfr10I RCCGGY 1 cut(s) 160
Cfr13I GGNCC 2 cut(s) 158, 1370
Csp6I GTAC 3 cut(s) 396, 1056, 1323
CspAI ACCGGT 1 cut(s) 160
CviQI GTAC 3 cut(s) 396, 1056, 1323
DdeI CTNAG 3 cut(s) 29, 1335, 1512
DpnI GATC 9 cut(s) 117, 619, 902, 1117, 1365, 1394, 1479, 1581, 1653
DpnII GATC 9 cut(s) 115, 617, 900, 1115, 1363, 1392, 1477, 1579, 1651
DraI TTTAAA 1 cut(s) 93
Eam1104I CTCTTC 3 cut(s) 45, 774, 1078
EarI CTCTTC 3 cut(s) 45, 774, 1078
Eco130I CCWWGG 1 cut(s) 1529
Eco31I GGTCTC 1 cut(s) 164
Eco47I GGWCC 2 cut(s) 158, 1370
Eco57I CTGAAG 6 cut(s) 69, 291, 375, 447, 546, 588
Eco72I CACGTG 1 cut(s) 1148
Eco88I CYCGRG 1 cut(s) 497
Eco91I GGTNACC 2 cut(s) 925, 1603
EcoO65I GGTNACC 2 cut(s) 925, 1603
EcoRI GAATTC 1 cut(s) 142
EcoRII CCWGG 4 cut(s) 391, 432, 1104, 1441
EcoT14I CCWWGG 1 cut(s) 1529
ErhI CCWWGG 1 cut(s) 1529
FaqI GGGAC 2 cut(s) 341, 787
FauI CCCGC 1 cut(s) 317
FbaI TGATCA 2 cut(s) 115, 900
Fnu4HI GCNGC 7 cut(s) 561, 564, 947, 1110, 1140, 1143, 1317
FokI GGATG 7 cut(s) 71, 380, 386, 686, 1148, 1361, 1503
Fsp4HI GCNGC 7 cut(s) 561, 564, 947, 1110, 1140, 1143, 1317
FspBI CTAG 2 cut(s) 246, 1031
GluI GCNGC 7 cut(s) 561, 564, 947, 1110, 1140, 1143, 1317
GsaI CCCAGC 2 cut(s) 1081, 1488
GsuI CTGGAG 3 cut(s) 168, 1359, 1524
HapII CCGG 4 cut(s) 107, 161, 542, 615
HindIII AAGCTT 1 cut(s) 884
HinfI GANTC 5 cut(s) 152, 178, 551, 638, 767
HpaII CCGG 4 cut(s) 107, 161, 542, 615
HphI GGTGA 5 cut(s) 937, 1202, 1399, 1552, 1597
Hpy166II GTNNAC 2 cut(s) 15, 1271
Hpy188I TCNGA 5 cut(s) 141, 852, 905, 1477, 1651
Hpy188III TCNNGA 9 cut(s) 147, 156, 167, 464, 497, 499, 799, 1520, 1572
Hpy8I GTNNAC 2 cut(s) 15, 1271
HpyAV CCTTC 6 cut(s) 49, 309, 752, 796, 1015, 1125
HpyCH4III ACNGT 6 cut(s) 267, 505, 517, 583, 991, 1616
HpyCH4IV ACGT 4 cut(s) 219, 1147, 1174, 1321
HpyF10VI GCNNNNNNNGC 2 cut(s) 1148, 1162
HpyF3I CTNAG 3 cut(s) 29, 1335, 1512
HpySE526I ACGT 4 cut(s) 219, 1147, 1174, 1321
Ksp22I TGATCA 2 cut(s) 115, 900
Kzo9I GATC 9 cut(s) 115, 617, 900, 1115, 1363, 1392, 1477, 1579, 1651
LmnI GCTCC 4 cut(s) 544, 784, 831, 1300
Lsp1109I GCAGC 5 cut(s) 547, 550, 1096, 1126, 1303
LweI GCATC 5 cut(s) 76, 1126, 1272, 1340, 1525
MaeI CTAG 2 cut(s) 246, 1031
MaeII ACGT 4 cut(s) 219, 1147, 1174, 1321
MaeIII GTNAC 9 cut(s) 310, 529, 577, 601, 925, 1199, 1537, 1558, 1603
MalI GATC 9 cut(s) 117, 619, 902, 1117, 1365, 1394, 1479, 1581, 1653
MboI GATC 9 cut(s) 115, 617, 900, 1115, 1363, 1392, 1477, 1579, 1651
MfeI CAATTG 1 cut(s) 1343
MflI RGATCY 1 cut(s) 617
MmeI TCCRAC 1 cut(s) 1629
MseI TTAA 8 cut(s) 92, 210, 507, 519, 822, 882, 1257, 1275
MslI CAYNNNNRTG 2 cut(s) 462, 1242
MspA1I CMGCKG 2 cut(s) 1379, 1484
MspCI CTTAAG 1 cut(s) 881
MspI CCGG 4 cut(s) 107, 161, 542, 615
MspR9I CCNGG 4 cut(s) 393, 434, 1106, 1443
MunI CAATTG 1 cut(s) 1343
MvaI CCWGG 4 cut(s) 393, 434, 1106, 1443
MwoI GCNNNNNNNGC 2 cut(s) 1148, 1162
NcoI CCATGG 1 cut(s) 1529
NdeII GATC 9 cut(s) 115, 617, 900, 1115, 1363, 1392, 1477, 1579, 1651
NlaIV GGNNCC 2 cut(s) 597, 709
NmuCI GTSAC 6 cut(s) 310, 925, 1199, 1537, 1558, 1603
NspI RCATGY 4 cut(s) 730, 754, 984, 1307
PaeR7I CTCGAG 1 cut(s) 497
PagI TCATGA 1 cut(s) 798
PciI ACATGT 1 cut(s) 750
PfeI GAWTC 5 cut(s) 152, 178, 551, 638, 767
PinAI ACCGGT 1 cut(s) 160
PkrI GCNGC 7 cut(s) 562, 565, 948, 1111, 1141, 1144, 1318
PmaCI CACGTG 1 cut(s) 1148
PmlI CACGTG 1 cut(s) 1148
Ppu21I YACGTR 2 cut(s) 1148, 1322
PscI ACATGT 1 cut(s) 750
PsiI TTATAA 1 cut(s) 1499
Psp6I CCWGG 4 cut(s) 391, 432, 1104, 1441
PspCI CACGTG 1 cut(s) 1148
PspEI GGTNACC 2 cut(s) 925, 1603
PspFI CCCAGC 2 cut(s) 1077, 1484
PspGI CCWGG 4 cut(s) 391, 432, 1104, 1441
PspN4I GGNNCC 2 cut(s) 597, 709
PspPI GGNCC 2 cut(s) 158, 1370
PstI CTGCAG 1 cut(s) 1114
PstNI CAGNNNCTG 1 cut(s) 353
PsuI RGATCY 1 cut(s) 617
PvuII CAGCTG 1 cut(s) 1484
RsaI GTAC 3 cut(s) 397, 1057, 1324
RsaNI GTAC 3 cut(s) 396, 1056, 1323
RseI CAYNNNNRTG 2 cut(s) 462, 1242
SaqAI TTAA 8 cut(s) 92, 210, 507, 519, 822, 882, 1257, 1275
SatI GCNGC 7 cut(s) 561, 564, 947, 1110, 1140, 1143, 1317
Sau3AI GATC 9 cut(s) 115, 617, 900, 1115, 1363, 1392, 1477, 1579, 1651
Sau96I GGNCC 2 cut(s) 158, 1370
ScrFI CCNGG 4 cut(s) 393, 434, 1106, 1443
SfaNI GCATC 5 cut(s) 76, 1126, 1272, 1340, 1525
SfcI CTRYAG 1 cut(s) 1110
Sfr274I CTCGAG 1 cut(s) 497
SinI GGWCC 2 cut(s) 158, 1370
SlaI CTCGAG 1 cut(s) 497
SmiMI CAYNNNNRTG 2 cut(s) 462, 1242
SmlI CTYRAG 3 cut(s) 497, 534, 881
SmoI CTYRAG 3 cut(s) 497, 534, 881
SpeI ACTAGT 1 cut(s) 245
SsiI CCGC 6 cut(s) 324, 946, 1064, 1142, 1379, 1489
SspMI CTAG 2 cut(s) 246, 1031
StyD4I CCNGG 4 cut(s) 391, 432, 1104, 1441
StyI CCWWGG 1 cut(s) 1529
TaaI ACNGT 6 cut(s) 267, 505, 517, 583, 991, 1616
TaiI ACGT 4 cut(s) 222, 1150, 1177, 1324
TaqI TCGA 3 cut(s) 498, 1006, 1123
TauI GCSGC 2 cut(s) 949, 1145
TfiI GAWTC 5 cut(s) 152, 178, 551, 638, 767
Tru1I TTAA 8 cut(s) 92, 210, 507, 519, 822, 882, 1257, 1275
Tru9I TTAA 8 cut(s) 92, 210, 507, 519, 822, 882, 1257, 1275
TscAI CASTG 2 cut(s) 1186, 1204
TseFI GTSAC 6 cut(s) 310, 925, 1199, 1537, 1558, 1603
TseI GCWGC 5 cut(s) 560, 563, 1109, 1139, 1316
Tsp45I GTSAC 6 cut(s) 310, 925, 1199, 1537, 1558, 1603
TspDTI ATGAA 9 cut(s) 75, 390, 690, 771, 787, 815, 984, 1053, 1106
TspRI CASTG 2 cut(s) 1186, 1204
Vha464I CTTAAG 1 cut(s) 881
VpaK11BI GGWCC 2 cut(s) 158, 1370
XapI RAATTY 5 cut(s) 142, 292, 814, 1049, 1228
XceI RCATGY 4 cut(s) 730, 754, 984, 1307
XhoI CTCGAG 1 cut(s) 497
XspI CTAG 2 cut(s) 246, 1031
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.