Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0012426

Physical Location & Seq

Genomic Coordinates Reverse (-)

11598147 .. 11600737

Gene Structure 2591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1138800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGAGATATTTACGATTCATTTCCCCACATTTTTCCTGCATTAAAAAAACCCTAAACCCCCCAAATCCTATTCCCATTTCGTCTCTCCAATCGAAACCCCAGATTTTCTCTCATGTAGTGTGCAATTACACCACCGCTGTACCGGAGCAGACGCCGCCGCCGCCGTCCGAATCGGTATCGGCGATCGCGGACGAGATCTCGGGCCTGACTTTGCTCGAAGTCTCGGACCTCACGGAGGTTCTGAGGGAGAAATTGGGGGTGAAGGAGATGCCGGGGATGGTGATGATGATGCCCGGGATGGGATTCGGCGGCTTGAGGGGGGCCGGAAAGGGCGGCGCGGCGGCGGCCAAAAGCGAGGAGAAGGCGGAGAAGTTGGTGTTTGATGTAAAGCTCGATTCTTTCGACGCTGCGGCGAAGATCAAGGTGATTAAGGAGGTGCGGACGTTTACGGATTTGGGGCTGAAGGAGGCCAAGGACTTGGTGGAGAAGGCGCCTACGCTGTTGAAGAAGGGGGTTACGAAGGAGGAGGCCGAATCGATTGTTGCCAAGATGAAGGAAGTTGGTGCCAAAGTTTCTATGGAGAGGAGAGATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0031974 GO:0032543 GO:0032991 GO:0034641 GO:0034645 GO:0042645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:0140053 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L12 Ribosomal_L12_N

Protein Analysis

199

Amino Acids

21.42

Weight (kDa)

8.76

Isoelectric Point (pI)

40.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L12_N	PF16320	60 - 108	4.6e-10	Ribosomal protein L7/L12 dimerisation domain
Ribosomal_L12	PF00542	127 - 193	7.5e-25	Ribosomal protein L7/L12 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36420
fragaria_vesca	FvH4_1g12480 FvH4_1g12480
malus_domestica	MD02G1138800.v1.1 MD02G1139200.v1.1 MD15G1252100.v1.1
prunus_persica	Prupe.7G162000_v2.0.a1 Prupe.8G072700_v2.0.a1 Prupe.8G072700_v2.0.a1 Prupe.8G072700_v2.0.a1 Prupe.8G072700_v2.0.a1 Prupe.8G072700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0100351
rosa_laevigata	RLG00000016968
rosa_multiflora	Rmu_sc0004164.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142300
rosa_rugosa	Rorug02G0087800
rosa_samantha	Rh2CG142300
rosa_wichuraiana	Rw2G010720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	490, 563
AccII	CGCG	2 cut(s)	188, 338
AcoI	YGGCCR	1 cut(s)	345
AcuI	CTGAAG	1 cut(s)	482
AcyI	GRCGYC	2 cut(s)	152, 491
AfaI	GTAC	1 cut(s)	141
AfiI	CCNNNNNNNGG	2 cut(s)	235, 299
AgsI	TTSAA	1 cut(s)	505
AluBI	AGCT	1 cut(s)	391
AluI	AGCT	1 cut(s)	391
Alw26I	GTCTC	2 cut(s)	87, 226
Ama87I	CYCGRG	2 cut(s)	199, 293
AoxI	GGCC	5 cut(s)	202, 321, 345, 468, 528
ApeKI	GCWGC	1 cut(s)	407
AsiSI	GCGATCGC	1 cut(s)	186
AspLEI	GCGC	2 cut(s)	338, 493
AspS9I	GGNCC	3 cut(s)	202, 226, 321
AsuC2I	CCSGG	3 cut(s)	273, 294, 295
AsuHPI	GGTGA	3 cut(s)	271, 292, 436
AvaI	CYCGRG	2 cut(s)	199, 293
AvaII	GGWCC	1 cut(s)	226
BaeI	ACNNNNGTAYC	2 cut(s)	123, 156
BanI	GGYRCC	2 cut(s)	490, 563
BbvI	GCAGC	1 cut(s)	394
BccI	CCATC	2 cut(s)	271, 292
BceAI	ACGGC	1 cut(s)	148
BcnI	CCSGG	3 cut(s)	273, 294, 295
BcoDI	GTCTC	2 cut(s)	87, 226
BfoI	RGCGCY	1 cut(s)	494
BglII	AGATCT	1 cut(s)	195
Bme1390I	CCNGG	3 cut(s)	273, 294, 295
Bme18I	GGWCC	1 cut(s)	226
BmeT110I	CYCGRG	2 cut(s)	199, 293
BmgT120I	GGNCC	3 cut(s)	202, 226, 321
BmiI	GGNNCC	3 cut(s)	322, 492, 565
BmrFI	CCNGG	3 cut(s)	273, 294, 295
BmsI	GCATC	3 cut(s)	258, 279, 580
BpuEI	CTTGAG	1 cut(s)	334
BpuMI	CCSGG	3 cut(s)	273, 294, 295
Bsa29I	ATCGAT	1 cut(s)	536
BsaHI	GRCGYC	2 cut(s)	152, 491
BsaJI	CCNNGG	3 cut(s)	272, 293, 471
BsaWI	WCCGGW	1 cut(s)	142
Bsc4I	CCNNNNNNNGG	2 cut(s)	235, 299
BseCI	ATCGAT	1 cut(s)	536
BseDI	CCNNGG	3 cut(s)	272, 293, 471
BseGI	GGATG	2 cut(s)	282, 303
BseLI	CCNNNNNNNGG	2 cut(s)	235, 299
BseMII	CTCAG	1 cut(s)	233
BseRI	GAGGAG	2 cut(s)	371, 539
BseXI	GCAGC	1 cut(s)	394
Bsh1236I	CGCG	2 cut(s)	188, 338
Bsh1285I	CGRYCG	1 cut(s)	186
BshFI	GGCC	5 cut(s)	204, 323, 347, 470, 530
BshNI	GGYRCC	2 cut(s)	490, 563
BshVI	ATCGAT	1 cut(s)	536
BsiEI	CGRYCG	1 cut(s)	186
BsiHKCI	CYCGRG	2 cut(s)	199, 293
BsiSI	CCGG	4 cut(s)	143, 272, 294, 324
BslI	CCNNNNNNNGG	2 cut(s)	235, 299
BsmAI	GTCTC	2 cut(s)	87, 226
BsmBI	CGTCTC	1 cut(s)	87
BsnI	GGCC	5 cut(s)	204, 323, 347, 470, 530
BsoBI	CYCGRG	2 cut(s)	199, 293
Bsp143I	GATC	3 cut(s)	183, 195, 417
BspANI	GGCC	5 cut(s)	204, 323, 347, 470, 530
BspCNI	CTCAG	1 cut(s)	234
BspDI	ATCGAT	1 cut(s)	536
BspFNI	CGCG	2 cut(s)	188, 338
BspLI	GGNNCC	3 cut(s)	322, 492, 565
BspT107I	GGYRCC	2 cut(s)	490, 563
BssECI	CCNNGG	3 cut(s)	272, 293, 471
BssMI	GATC	3 cut(s)	183, 195, 417
BssNI	GRCGYC	2 cut(s)	152, 491
BssT1I	CCWWGG	1 cut(s)	471
BstACI	GRCGYC	2 cut(s)	152, 491
BstDEI	CTNAG	1 cut(s)	242
BstENI	CCTNNNNNAGG	1 cut(s)	233
BstF5I	GGATG	2 cut(s)	282, 303
BstFNI	CGCG	2 cut(s)	188, 338
BstH2I	RGCGCY	1 cut(s)	494
BstHHI	GCGC	2 cut(s)	338, 493
BstKTI	GATC	3 cut(s)	186, 198, 420
BstMAI	GTCTC	2 cut(s)	87, 226
BstMBI	GATC	3 cut(s)	183, 195, 417
BstMCI	CGRYCG	1 cut(s)	186
BstMWI	GCNNNNNNNGC	3 cut(s)	154, 160, 344
BstSCI	CCNGG	3 cut(s)	271, 292, 293
BstUI	CGCG	2 cut(s)	188, 338
BstV1I	GCAGC	1 cut(s)	394
BstX2I	RGATCY	1 cut(s)	195
BstXI	CCANNNNNNTGG	1 cut(s)	478
BstYI	RGATCY	1 cut(s)	195
Bsu15I	ATCGAT	1 cut(s)	536
BsuRI	GGCC	5 cut(s)	204, 323, 347, 470, 530
BsuTUI	ATCGAT	1 cut(s)	536
BtsCI	GGATG	2 cut(s)	282, 303
CfoI	GCGC	2 cut(s)	338, 493
Cfr13I	GGNCC	3 cut(s)	202, 226, 321
Cfr9I	CCCGGG	1 cut(s)	293
ClaI	ATCGAT	1 cut(s)	536
CseI	GACGC	2 cut(s)	160, 413
Csp6I	GTAC	1 cut(s)	140
CviAII	CATG	1 cut(s)	113
CviJI	RGCY	8 cut(s)	204, 312, 323, 347, 391, 460, 470, 530
CviKI_1	RGCY	8 cut(s)	204, 312, 323, 347, 391, 460, 470, 530
CviQI	GTAC	1 cut(s)	140
DdeI	CTNAG	1 cut(s)	242
DinI	GGCGCC	1 cut(s)	492
DpnI	GATC	3 cut(s)	185, 197, 419
DpnII	GATC	3 cut(s)	183, 195, 417
EaeI	YGGCCR	1 cut(s)	345
EciI	GGCGGA	1 cut(s)	380
Eco130I	CCWWGG	1 cut(s)	471
Eco47I	GGWCC	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	482
Eco88I	CYCGRG	2 cut(s)	199, 293
EcoNI	CCTNNNNNAGG	1 cut(s)	233
EcoT14I	CCWWGG	1 cut(s)	471
EgeI	GGCGCC	1 cut(s)	492
EheI	GGCGCC	1 cut(s)	492
ErhI	CCWWGG	1 cut(s)	471
Esp3I	CGTCTC	1 cut(s)	87
FaeI	CATG	1 cut(s)	116
FaiI	YATR	2 cut(s)	114, 578
FatI	CATG	1 cut(s)	112
FokI	GGATG	2 cut(s)	289, 310
GlaI	GCGC	2 cut(s)	337, 492
HaeII	RGCGCY	1 cut(s)	494
HaeIII	GGCC	5 cut(s)	204, 323, 347, 470, 530
HapII	CCGG	4 cut(s)	143, 272, 294, 324
HgaI	GACGC	2 cut(s)	160, 413
HhaI	GCGC	2 cut(s)	338, 493
Hin1I	GRCGYC	2 cut(s)	152, 491
Hin1II	CATG	1 cut(s)	116
Hin6I	GCGC	2 cut(s)	336, 491
HinP1I	GCGC	2 cut(s)	336, 491
HinfI	GANTC	5 cut(s)	15, 170, 303, 395, 533
HpaII	CCGG	4 cut(s)	143, 272, 294, 324
HphI	GGTGA	3 cut(s)	271, 292, 436
Hpy166II	GTNNAC	1 cut(s)	447
Hpy188I	TCNGA	3 cut(s)	169, 226, 243
Hpy8I	GTNNAC	1 cut(s)	447
Hpy99I	CGWCG	1 cut(s)	407
HpyAV	CCTTC	7 cut(s)	256, 355, 457, 481, 502, 514, 547
HpyCH4IV	ACGT	1 cut(s)	443
HpyCH4V	TGCA	2 cut(s)	39, 123
HpyF10VI	GCNNNNNNNGC	3 cut(s)	154, 160, 344
HpyF3I	CTNAG	1 cut(s)	242
HpySE526I	ACGT	1 cut(s)	443
Hsp92I	GRCGYC	2 cut(s)	152, 491
Hsp92II	CATG	1 cut(s)	116
HspAI	GCGC	2 cut(s)	336, 491
KasI	GGCGCC	1 cut(s)	490
Kzo9I	GATC	3 cut(s)	183, 195, 417
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	7 cut(s)	49, 113, 156, 218, 285, 307, 337
Lsp1109I	GCAGC	1 cut(s)	394
LweI	GCATC	3 cut(s)	258, 279, 580
MaeII	ACGT	1 cut(s)	443
MaeIII	GTNAC	1 cut(s)	514
MalI	GATC	3 cut(s)	185, 197, 419
MboI	GATC	3 cut(s)	183, 195, 417
MboII	GAAGA	2 cut(s)	427, 517
MflI	RGATCY	1 cut(s)	195
MluCI	AATT	2 cut(s)	124, 251
Mly113I	GGCGCC	1 cut(s)	491
MseI	TTAA	2 cut(s)	42, 429
MspA1I	CMGCKG	1 cut(s)	137
MspI	CCGG	4 cut(s)	143, 272, 294, 324
MspR9I	CCNGG	3 cut(s)	273, 294, 295
MvnI	CGCG	2 cut(s)	188, 338
MwoI	GCNNNNNNNGC	3 cut(s)	154, 160, 344
NarI	GGCGCC	1 cut(s)	491
NciI	CCSGG	3 cut(s)	273, 294, 295
NdeII	GATC	3 cut(s)	183, 195, 417
NlaIII	CATG	1 cut(s)	116
NlaIV	GGNNCC	3 cut(s)	322, 492, 565
PcsI	WCGNNNNNNNCGW	2 cut(s)	179, 399
PfeI	GAWTC	5 cut(s)	15, 170, 303, 395, 533
Ple19I	CGATCG	1 cut(s)	186
PluTI	GGCGCC	1 cut(s)	494
PspN4I	GGNNCC	3 cut(s)	322, 492, 565
PspPI	GGNCC	3 cut(s)	202, 226, 321
PsuI	RGATCY	1 cut(s)	195
PvuI	CGATCG	1 cut(s)	186
RgaI	GCGATCGC	1 cut(s)	186
RsaI	GTAC	1 cut(s)	141
RsaNI	GTAC	1 cut(s)	140
SaqAI	TTAA	2 cut(s)	42, 429
Sau3AI	GATC	3 cut(s)	183, 195, 417
Sau96I	GGNCC	3 cut(s)	202, 226, 321
ScrFI	CCNGG	3 cut(s)	273, 294, 295
SetI	ASST	6 cut(s)	231, 240, 393, 426, 438, 446
SfaAI	GCGATCGC	1 cut(s)	186
SfaNI	GCATC	3 cut(s)	258, 279, 580
SfoI	GGCGCC	1 cut(s)	492
SgfI	GCGATCGC	1 cut(s)	186
SinI	GGWCC	1 cut(s)	226
SmaI	CCCGGG	1 cut(s)	295
SmlI	CTYRAG	1 cut(s)	313
SmoI	CTYRAG	1 cut(s)	313
Sse9I	AATT	2 cut(s)	124, 251
SspDI	GGCGCC	1 cut(s)	490
StyD4I	CCNGG	3 cut(s)	271, 292, 293
StyI	CCWWGG	1 cut(s)	471
TaiI	ACGT	1 cut(s)	446
TaqI	TCGA	5 cut(s)	92, 216, 393, 402, 536
TasI	AATT	2 cut(s)	124, 251
TauI	GCSGC	9 cut(s)	157, 160, 163, 312, 336, 341, 344, 347, 413
TfiI	GAWTC	5 cut(s)	15, 170, 303, 395, 533
Tru1I	TTAA	2 cut(s)	42, 429
Tru9I	TTAA	2 cut(s)	42, 429
TseI	GCWGC	1 cut(s)	407
TspDTI	ATGAA	2 cut(s)	7, 566
TspGWI	ACGGA	2 cut(s)	248, 464
TspMI	CCCGGG	1 cut(s)	293
VpaK11BI	GGWCC	1 cut(s)	226
XagI	CCTNNNNNAGG	1 cut(s)	233
XcmI	CCANNNNNNNNNTGG	2 cut(s)	478, 574
XmaI	CCCGGG	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.