Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0012426

Physical Location & Seq

Genomic Coordinates Reverse (-)

11614820 .. 11615188

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1139200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGAGATATTTACGACTCATTTCCCCACATTTTTCCCGCATTCAAAAAAACCTAAACCCCCCAAATCCTATTCCCATTTCGTCTCTCCAATCGAAGCCCCAGATTTTCTCTCATGTAGTGTGCAATTACACCACCGCTGTACCGGAGCAGACGCCGCCGCCGTCCGAGTCGGTATCGGCGATCGCGGACGAGATCTCGGGCCTGACTTTGCTCGAAGTCTCGGACCTCACGGAGGTTCTGAGGGAGAAATTGGGGGTGAAGGAGATGCCGGGGATGGTGATGATGATGCCCGGGATGGGATTCGGCGGCTTGAGGGGGGCCGGAAAGGGCGGCGCGGCGGCGGCCAAAAGCAAGGAGAAGGCGGANNNN

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0031974 GO:0032543 GO:0032991 GO:0034641 GO:0034645 GO:0042645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:0140053 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L12 Ribosomal_L12_N

Protein Analysis

123

Amino Acids

12.93

Weight (kDa)

9.21

Isoelectric Point (pI)

46.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L12_N	PF16320	59 - 107	2.6e-10	Ribosomal protein L7/L12 dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36420
fragaria_vesca	FvH4_1g12480 FvH4_1g12480
malus_domestica	MD02G1138800.v1.1 MD02G1139200.v1.1 MD15G1252100.v1.1
prunus_persica	Prupe.7G162000_v2.0.a1 Prupe.8G072700_v2.0.a1 Prupe.8G072700_v2.0.a1 Prupe.8G072700_v2.0.a1 Prupe.8G072700_v2.0.a1 Prupe.8G072700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0100351
rosa_laevigata	RLG00000016968
rosa_multiflora	Rmu_sc0004164.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142300
rosa_rugosa	Rorug02G0087800
rosa_samantha	Rh2CG142300
rosa_wichuraiana	Rw2G010720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	185, 335
AcoI	YGGCCR	1 cut(s)	342
AcyI	GRCGYC	1 cut(s)	152
AfaI	GTAC	1 cut(s)	141
AfiI	CCNNNNNNNGG	2 cut(s)	232, 296
AgsI	TTSAA	1 cut(s)	44
Alw26I	GTCTC	2 cut(s)	87, 223
Ama87I	CYCGRG	2 cut(s)	196, 290
AoxI	GGCC	3 cut(s)	199, 318, 342
AsiSI	GCGATCGC	1 cut(s)	183
AspLEI	GCGC	1 cut(s)	335
AspS9I	GGNCC	3 cut(s)	199, 223, 318
AsuC2I	CCSGG	3 cut(s)	270, 291, 292
AsuHPI	GGTGA	2 cut(s)	268, 289
AvaI	CYCGRG	2 cut(s)	196, 290
AvaII	GGWCC	1 cut(s)	223
BaeI	ACNNNNGTAYC	2 cut(s)	123, 156
BccI	CCATC	2 cut(s)	268, 289
BceAI	ACGGC	1 cut(s)	145
BcnI	CCSGG	3 cut(s)	270, 291, 292
BcoDI	GTCTC	2 cut(s)	87, 223
BglII	AGATCT	1 cut(s)	192
BisI	GCNGC	7 cut(s)	155, 158, 307, 331, 336, 339, 342
BlsI	GCNGC	7 cut(s)	156, 159, 308, 332, 337, 340, 343
Bme1390I	CCNGG	3 cut(s)	270, 291, 292
Bme18I	GGWCC	1 cut(s)	223
BmeT110I	CYCGRG	2 cut(s)	196, 290
BmgT120I	GGNCC	3 cut(s)	199, 223, 318
BmiI	GGNNCC	1 cut(s)	319
BmrFI	CCNGG	3 cut(s)	270, 291, 292
BmsI	GCATC	2 cut(s)	255, 276
BpuEI	CTTGAG	1 cut(s)	331
BpuMI	CCSGG	3 cut(s)	270, 291, 292
BsaHI	GRCGYC	1 cut(s)	152
BsaJI	CCNNGG	2 cut(s)	269, 290
BsaWI	WCCGGW	1 cut(s)	142
Bsc4I	CCNNNNNNNGG	2 cut(s)	232, 296
BseDI	CCNNGG	2 cut(s)	269, 290
BseGI	GGATG	2 cut(s)	279, 300
BseLI	CCNNNNNNNGG	2 cut(s)	232, 296
BseMII	CTCAG	1 cut(s)	230
Bsh1236I	CGCG	2 cut(s)	185, 335
Bsh1285I	CGRYCG	1 cut(s)	183
BshFI	GGCC	3 cut(s)	201, 320, 344
BsiEI	CGRYCG	1 cut(s)	183
BsiHKCI	CYCGRG	2 cut(s)	196, 290
BsiSI	CCGG	4 cut(s)	143, 269, 291, 321
BslI	CCNNNNNNNGG	2 cut(s)	232, 296
BsmAI	GTCTC	2 cut(s)	87, 223
BsmBI	CGTCTC	1 cut(s)	87
BsmI	GAATGC	1 cut(s)	39
BsnI	GGCC	3 cut(s)	201, 320, 344
BsoBI	CYCGRG	2 cut(s)	196, 290
Bsp143I	GATC	2 cut(s)	180, 192
BspANI	GGCC	3 cut(s)	201, 320, 344
BspCNI	CTCAG	1 cut(s)	231
BspFNI	CGCG	2 cut(s)	185, 335
BspLI	GGNNCC	1 cut(s)	319
BssECI	CCNNGG	2 cut(s)	269, 290
BssMI	GATC	2 cut(s)	180, 192
BssNI	GRCGYC	1 cut(s)	152
BstACI	GRCGYC	1 cut(s)	152
BstDEI	CTNAG	1 cut(s)	239
BstENI	CCTNNNNNAGG	1 cut(s)	230
BstF5I	GGATG	2 cut(s)	279, 300
BstFNI	CGCG	2 cut(s)	185, 335
BstHHI	GCGC	1 cut(s)	335
BstKTI	GATC	2 cut(s)	183, 195
BstMAI	GTCTC	2 cut(s)	87, 223
BstMBI	GATC	2 cut(s)	180, 192
BstMCI	CGRYCG	1 cut(s)	183
BstMWI	GCNNNNNNNGC	2 cut(s)	154, 341
BstSCI	CCNGG	3 cut(s)	268, 289, 290
BstUI	CGCG	2 cut(s)	185, 335
BstX2I	RGATCY	1 cut(s)	192
BstYI	RGATCY	1 cut(s)	192
BsuRI	GGCC	3 cut(s)	201, 320, 344
BtsCI	GGATG	2 cut(s)	279, 300
CfoI	GCGC	1 cut(s)	335
Cfr13I	GGNCC	3 cut(s)	199, 223, 318
Cfr9I	CCCGGG	1 cut(s)	290
CseI	GACGC	1 cut(s)	160
Csp6I	GTAC	1 cut(s)	140
CviAII	CATG	1 cut(s)	113
CviJI	RGCY	5 cut(s)	97, 201, 309, 320, 344
CviKI_1	RGCY	5 cut(s)	97, 201, 309, 320, 344
CviQI	GTAC	1 cut(s)	140
DdeI	CTNAG	1 cut(s)	239
DpnI	GATC	2 cut(s)	182, 194
DpnII	GATC	2 cut(s)	180, 192
EaeI	YGGCCR	1 cut(s)	342
Eco47I	GGWCC	1 cut(s)	223
Eco88I	CYCGRG	2 cut(s)	196, 290
EcoNI	CCTNNNNNAGG	1 cut(s)	230
Esp3I	CGTCTC	1 cut(s)	87
FaeI	CATG	1 cut(s)	116
FaiI	YATR	1 cut(s)	114
FatI	CATG	1 cut(s)	112
FauI	CCCGC	1 cut(s)	44
Fnu4HI	GCNGC	7 cut(s)	155, 158, 307, 331, 336, 339, 342
FokI	GGATG	2 cut(s)	286, 307
Fsp4HI	GCNGC	7 cut(s)	155, 158, 307, 331, 336, 339, 342
GlaI	GCGC	1 cut(s)	334
GluI	GCNGC	7 cut(s)	155, 158, 307, 331, 336, 339, 342
HaeIII	GGCC	3 cut(s)	201, 320, 344
HapII	CCGG	4 cut(s)	143, 269, 291, 321
HgaI	GACGC	1 cut(s)	160
HhaI	GCGC	1 cut(s)	335
Hin1I	GRCGYC	1 cut(s)	152
Hin1II	CATG	1 cut(s)	116
Hin6I	GCGC	1 cut(s)	333
HinP1I	GCGC	1 cut(s)	333
HinfI	GANTC	3 cut(s)	15, 167, 300
HpaII	CCGG	4 cut(s)	143, 269, 291, 321
HphI	GGTGA	2 cut(s)	268, 289
Hpy188I	TCNGA	3 cut(s)	166, 223, 240
HpyAV	CCTTC	2 cut(s)	253, 352
HpyCH4V	TGCA	1 cut(s)	123
HpyF10VI	GCNNNNNNNGC	2 cut(s)	154, 341
HpyF3I	CTNAG	1 cut(s)	239
Hsp92I	GRCGYC	1 cut(s)	152
Hsp92II	CATG	1 cut(s)	116
HspAI	GCGC	1 cut(s)	333
Kzo9I	GATC	2 cut(s)	180, 192
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	6 cut(s)	113, 156, 215, 282, 304, 334
LweI	GCATC	2 cut(s)	255, 276
MalI	GATC	2 cut(s)	182, 194
MboI	GATC	2 cut(s)	180, 192
MflI	RGATCY	1 cut(s)	192
MluCI	AATT	2 cut(s)	124, 248
MlyI	GAGTC	2 cut(s)	9, 176
MnlI	CCTC	4 cut(s)	226, 234, 236, 306
MspA1I	CMGCKG	1 cut(s)	137
MspI	CCGG	4 cut(s)	143, 269, 291, 321
MspR9I	CCNGG	3 cut(s)	270, 291, 292
Mva1269I	GAATGC	1 cut(s)	39
MvnI	CGCG	2 cut(s)	185, 335
MwoI	GCNNNNNNNGC	2 cut(s)	154, 341
NciI	CCSGG	3 cut(s)	270, 291, 292
NdeII	GATC	2 cut(s)	180, 192
NlaIII	CATG	1 cut(s)	116
NlaIV	GGNNCC	1 cut(s)	319
PcsI	WCGNNNNNNNCGW	2 cut(s)	158, 176
PctI	GAATGC	1 cut(s)	39
PfeI	GAWTC	1 cut(s)	300
PkrI	GCNGC	7 cut(s)	156, 159, 308, 332, 337, 340, 343
Ple19I	CGATCG	1 cut(s)	183
PleI	GAGTC	2 cut(s)	9, 175
PpsI	GAGTC	2 cut(s)	9, 175
PspN4I	GGNNCC	1 cut(s)	319
PspPI	GGNCC	3 cut(s)	199, 223, 318
PsuI	RGATCY	1 cut(s)	192
PvuI	CGATCG	1 cut(s)	183
RgaI	GCGATCGC	1 cut(s)	183
RsaI	GTAC	1 cut(s)	141
RsaNI	GTAC	1 cut(s)	140
SatI	GCNGC	7 cut(s)	155, 158, 307, 331, 336, 339, 342
Sau3AI	GATC	2 cut(s)	180, 192
Sau96I	GGNCC	3 cut(s)	199, 223, 318
SchI	GAGTC	2 cut(s)	9, 176
ScrFI	CCNGG	3 cut(s)	270, 291, 292
SetI	ASST	3 cut(s)	54, 228, 237
SfaAI	GCGATCGC	1 cut(s)	183
SfaNI	GCATC	2 cut(s)	255, 276
SgfI	GCGATCGC	1 cut(s)	183
SinI	GGWCC	1 cut(s)	223
SmaI	CCCGGG	1 cut(s)	292
SmlI	CTYRAG	1 cut(s)	310
SmoI	CTYRAG	1 cut(s)	310
Sse9I	AATT	2 cut(s)	124, 248
StyD4I	CCNGG	3 cut(s)	268, 289, 290
TaqI	TCGA	2 cut(s)	92, 213
TasI	AATT	2 cut(s)	124, 248
TauI	GCSGC	7 cut(s)	157, 160, 309, 333, 338, 341, 344
TfiI	GAWTC	1 cut(s)	300
TspGWI	ACGGA	1 cut(s)	245
TspMI	CCCGGG	1 cut(s)	290
VpaK11BI	GGWCC	1 cut(s)	223
XagI	CCTNNNNNAGG	1 cut(s)	230
XmaI	CCCGGG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.