Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0012426

Physical Location & Seq

Genomic Coordinates Reverse (-)

10633069 .. 10635400

Gene Structure 2332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G072700.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGAGATATTTACGGTTCATTTCCCCACATTTTTCTTGCATTCACAAAACCCTAAACCCCCAAAGCCCTAATCTTCTATCCTGTCTCCAATCAAAGCCCCGGATATGTTCGCATTTCGTGTGCAATTACACCACCGATGCACCGGAGCAAAGGCCACCTCCGTCCGAGACGGTGTCGGCGATCGCGGATGAGATCTCGGGCCTGACTTTGCTTGAAGTCTCGGACCTCACGGAGGTTCTGAGGGAGAAATTGGGCATAAAGGAGATGCCGGTGATGGCGATGATGATGCCAGGGATGGGATTTGGCGGCTTGAAAGGGGCCGGCAAGGGTGGTCCGGCGGCGGCTAAAGGCGAGGAAAAGGTGGAGAAGACGGCCTTTGATGTAAAGCTCGATTCTTTTGATGCTGCTGCGAAGATCAAAGTGATTAAGGAGGTGAGGACGTTTACGAGTTTGGGGCTGAAGGAGGCCAAGGACTTGGTGGAGAAGGCGCCTACCCTGTTGAAGAAGGGAGTTACGAAGGAGGAGGCGGATTCGATTGTGGCGAAGATGAAGGAAGTTGGTGCCAAAGTTTCTATGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0031974 GO:0032543 GO:0032991 GO:0034641 GO:0034645 GO:0042645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:0140053 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L12 Ribosomal_L12_N

Protein Analysis

194

Amino Acids

20.93

Weight (kDa)

8.59

Isoelectric Point (pI)

43.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36420
fragaria_vesca	FvH4_1g12480 FvH4_1g12480
malus_domestica	MD02G1138800.v1.1 MD02G1139200.v1.1 MD15G1252100.v1.1
prunus_persica	Prupe.7G162000_v2.0.a1 Prupe.8G072700_v2.0.a1 Prupe.8G072700_v2.0.a1 Prupe.8G072700_v2.0.a1 Prupe.8G072700_v2.0.a1 Prupe.8G072700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0100351
rosa_laevigata	RLG00000016968
rosa_multiflora	Rmu_sc0004164.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142300
rosa_rugosa	Rorug02G0087800
rosa_samantha	Rh2CG142300
rosa_wichuraiana	Rw2G010720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	487, 560
AccII	CGCG	1 cut(s)	185
AciI	CCGC	5 cut(s)	185, 306, 338, 341, 527
AcuI	CTGAAG	1 cut(s)	479
AcyI	GRCGYC	1 cut(s)	488
AfiI	CCNNNNNNNGG	2 cut(s)	232, 296
AgsI	TTSAA	3 cut(s)	215, 313, 502
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	1 cut(s)	388
AluI	AGCT	1 cut(s)	388
Alw26I	GTCTC	3 cut(s)	89, 161, 223
Ama87I	CYCGRG	1 cut(s)	196
AoxI	GGCC	5 cut(s)	152, 199, 318, 372, 465
ApeKI	GCWGC	2 cut(s)	404, 407
AsiSI	GCGATCGC	1 cut(s)	183
AspLEI	GCGC	1 cut(s)	490
AspS9I	GGNCC	4 cut(s)	199, 223, 318, 332
AsuC2I	CCSGG	1 cut(s)	100
AsuHPI	GGTGA	2 cut(s)	283, 445
AvaI	CYCGRG	1 cut(s)	196
AvaII	GGWCC	2 cut(s)	223, 332
BanI	GGYRCC	2 cut(s)	487, 560
BbsI	GAAGAC	1 cut(s)	374
BbvI	GCAGC	2 cut(s)	391, 394
BccI	CCATC	2 cut(s)	268, 289
BceAI	ACGGC	1 cut(s)	387
BcgI	CGANNNNNNTGC	2 cut(s)	268, 302
BciT130I	CCWGG	1 cut(s)	291
BcnI	CCSGG	1 cut(s)	100
BcoDI	GTCTC	3 cut(s)	89, 161, 223
BfoI	RGCGCY	1 cut(s)	491
BglII	AGATCT	1 cut(s)	192
BisI	GCNGC	5 cut(s)	307, 339, 342, 405, 408
BlsI	GCNGC	5 cut(s)	308, 340, 343, 406, 409
Bme1390I	CCNGG	2 cut(s)	100, 291
Bme18I	GGWCC	2 cut(s)	223, 332
BmeT110I	CYCGRG	1 cut(s)	196
BmgT120I	GGNCC	4 cut(s)	199, 223, 318, 332
BmiI	GGNNCC	3 cut(s)	319, 489, 562
BmrFI	CCNGG	2 cut(s)	100, 291
BmsI	GCATC	4 cut(s)	127, 255, 276, 391
BpiI	GAAGAC	1 cut(s)	374
BpuMI	CCSGG	1 cut(s)	100
BsaHI	GRCGYC	1 cut(s)	488
BsaJI	CCNNGG	3 cut(s)	98, 290, 468
BsaWI	WCCGGW	1 cut(s)	142
Bsc4I	CCNNNNNNNGG	2 cut(s)	232, 296
Bse118I	RCCGGY	2 cut(s)	268, 320
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	3 cut(s)	98, 290, 468
BseGI	GGATG	2 cut(s)	193, 300
BseLI	CCNNNNNNNGG	2 cut(s)	232, 296
BseMII	CTCAG	1 cut(s)	230
BseRI	GAGGAG	1 cut(s)	536
BseXI	GCAGC	2 cut(s)	391, 394
Bsh1236I	CGCG	1 cut(s)	185
Bsh1285I	CGRYCG	1 cut(s)	183
BshFI	GGCC	5 cut(s)	154, 201, 320, 374, 467
BshNI	GGYRCC	2 cut(s)	487, 560
BsiEI	CGRYCG	1 cut(s)	183
BsiHKCI	CYCGRG	1 cut(s)	196
BsiSI	CCGG	5 cut(s)	100, 143, 269, 321, 335
BslI	CCNNNNNNNGG	2 cut(s)	232, 296
BsmAI	GTCTC	3 cut(s)	89, 161, 223
BsmBI	CGTCTC	1 cut(s)	161
BsmI	GAATGC	1 cut(s)	39
BsnI	GGCC	5 cut(s)	154, 201, 320, 374, 467
BsoBI	CYCGRG	1 cut(s)	196
Bsp143I	GATC	3 cut(s)	180, 192, 414
BspACI	CCGC	5 cut(s)	185, 306, 338, 341, 527
BspANI	GGCC	5 cut(s)	154, 201, 320, 374, 467
BspCNI	CTCAG	1 cut(s)	231
BspFNI	CGCG	1 cut(s)	185
BspLI	GGNNCC	3 cut(s)	319, 489, 562
BspT107I	GGYRCC	2 cut(s)	487, 560
BsrFI	RCCGGY	2 cut(s)	268, 320
BssAI	RCCGGY	2 cut(s)	268, 320
BssECI	CCNNGG	3 cut(s)	98, 290, 468
BssMI	GATC	3 cut(s)	180, 192, 414
BssNI	GRCGYC	1 cut(s)	488
BssT1I	CCWWGG	1 cut(s)	468
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	2 cut(s)	15, 172
BstACI	GRCGYC	1 cut(s)	488
BstC8I	GCNNGC	1 cut(s)	322
BstDEI	CTNAG	1 cut(s)	239
BstENI	CCTNNNNNAGG	1 cut(s)	230
BstF5I	GGATG	2 cut(s)	193, 300
BstFNI	CGCG	1 cut(s)	185
BstH2I	RGCGCY	1 cut(s)	491
BstHHI	GCGC	1 cut(s)	490
BstKTI	GATC	3 cut(s)	183, 195, 417
BstMAI	GTCTC	3 cut(s)	89, 161, 223
BstMBI	GATC	3 cut(s)	180, 192, 414
BstMCI	CGRYCG	1 cut(s)	183
BstNI	CCWGG	1 cut(s)	291
BstSCI	CCNGG	2 cut(s)	98, 289
BstUI	CGCG	1 cut(s)	185
BstV1I	GCAGC	2 cut(s)	391, 394
BstV2I	GAAGAC	1 cut(s)	374
BstX2I	RGATCY	1 cut(s)	192
BstXI	CCANNNNNNTGG	1 cut(s)	475
BstYI	RGATCY	1 cut(s)	192
BsuRI	GGCC	5 cut(s)	154, 201, 320, 374, 467
BtgZI	GCGATG	1 cut(s)	293
BtsCI	GGATG	2 cut(s)	193, 300
Cac8I	GCNNGC	1 cut(s)	322
CfoI	GCGC	1 cut(s)	490
Cfr10I	RCCGGY	2 cut(s)	268, 320
Cfr13I	GGNCC	4 cut(s)	199, 223, 318, 332
DdeI	CTNAG	1 cut(s)	239
DinI	GGCGCC	1 cut(s)	489
DpnI	GATC	3 cut(s)	182, 194, 416
DpnII	GATC	3 cut(s)	180, 192, 414
EciI	GGCGGA	1 cut(s)	542
Eco130I	CCWWGG	1 cut(s)	468
Eco47I	GGWCC	2 cut(s)	223, 332
Eco57I	CTGAAG	1 cut(s)	479
Eco88I	CYCGRG	1 cut(s)	196
EcoNI	CCTNNNNNAGG	1 cut(s)	230
EcoRII	CCWGG	1 cut(s)	289
EcoT14I	CCWWGG	1 cut(s)	468
EgeI	GGCGCC	1 cut(s)	489
EheI	GGCGCC	1 cut(s)	489
ErhI	CCWWGG	1 cut(s)	468
Esp3I	CGTCTC	1 cut(s)	161
FaiI	YATR	3 cut(s)	106, 257, 575
FalI	AAGNNNNNCTT	2 cut(s)	359, 391
Fnu4HI	GCNGC	5 cut(s)	307, 339, 342, 405, 408
FokI	GGATG	2 cut(s)	200, 307
Fsp4HI	GCNGC	5 cut(s)	307, 339, 342, 405, 408
GlaI	GCGC	1 cut(s)	489
GluI	GCNGC	5 cut(s)	307, 339, 342, 405, 408
HaeII	RGCGCY	1 cut(s)	491
HaeIII	GGCC	5 cut(s)	154, 201, 320, 374, 467
HapII	CCGG	5 cut(s)	100, 143, 269, 321, 335
HhaI	GCGC	1 cut(s)	490
Hin1I	GRCGYC	1 cut(s)	488
Hin6I	GCGC	1 cut(s)	488
HinP1I	GCGC	1 cut(s)	488
HinfI	GANTC	2 cut(s)	392, 530
HpaII	CCGG	5 cut(s)	100, 143, 269, 321, 335
HphI	GGTGA	2 cut(s)	283, 445
Hpy166II	GTNNAC	1 cut(s)	444
Hpy188I	TCNGA	3 cut(s)	166, 223, 240
Hpy8I	GTNNAC	1 cut(s)	444
HpyAV	CCTTC	5 cut(s)	454, 478, 499, 511, 544
HpyCH4III	ACNGT	2 cut(s)	15, 172
HpyCH4IV	ACGT	1 cut(s)	440
HpyCH4V	TGCA	3 cut(s)	39, 123, 140
HpyF3I	CTNAG	1 cut(s)	239
HpySE526I	ACGT	1 cut(s)	440
Hsp92I	GRCGYC	1 cut(s)	488
HspAI	GCGC	1 cut(s)	488
KasI	GGCGCC	1 cut(s)	487
KroI	GCCGGC	1 cut(s)	320
KroNI	GCCGGC	1 cut(s)	322
Kzo9I	GATC	3 cut(s)	180, 192, 414
LmnI	GCTCC	1 cut(s)	145
Lsp1109I	GCAGC	2 cut(s)	391, 394
LweI	GCATC	4 cut(s)	127, 255, 276, 391
MaeII	ACGT	1 cut(s)	440
MaeIII	GTNAC	1 cut(s)	511
MalI	GATC	3 cut(s)	182, 194, 416
MboI	GATC	3 cut(s)	180, 192, 414
MboII	GAAGA	5 cut(s)	65, 379, 424, 514, 556
MflI	RGATCY	1 cut(s)	192
MluCI	AATT	2 cut(s)	124, 248
Mly113I	GGCGCC	1 cut(s)	488
MroNI	GCCGGC	1 cut(s)	320
MseI	TTAA	1 cut(s)	426
MspI	CCGG	5 cut(s)	100, 143, 269, 321, 335
MspR9I	CCNGG	2 cut(s)	100, 291
Mva1269I	GAATGC	1 cut(s)	39
MvaI	CCWGG	1 cut(s)	291
MvnI	CGCG	1 cut(s)	185
NaeI	GCCGGC	1 cut(s)	322
NarI	GGCGCC	1 cut(s)	488
NciI	CCSGG	1 cut(s)	100
NdeII	GATC	3 cut(s)	180, 192, 414
NgoMIV	GCCGGC	1 cut(s)	320
NlaIV	GGNNCC	3 cut(s)	319, 489, 562
PcsI	WCGNNNNNNNCGW	2 cut(s)	176, 539
PctI	GAATGC	1 cut(s)	39
PdiI	GCCGGC	1 cut(s)	322
PfeI	GAWTC	2 cut(s)	392, 530
PflFI	GACNNNGTC	1 cut(s)	172
PkrI	GCNGC	5 cut(s)	308, 340, 343, 406, 409
Ple19I	CGATCG	1 cut(s)	183
PluTI	GGCGCC	1 cut(s)	491
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	3 cut(s)	319, 489, 562
PspPI	GGNCC	4 cut(s)	199, 223, 318, 332
PsuI	RGATCY	1 cut(s)	192
PsyI	GACNNNGTC	1 cut(s)	172
PvuI	CGATCG	1 cut(s)	183
RgaI	GCGATCGC	1 cut(s)	183
SaqAI	TTAA	1 cut(s)	426
SatI	GCNGC	5 cut(s)	307, 339, 342, 405, 408
Sau3AI	GATC	3 cut(s)	180, 192, 414
Sau96I	GGNCC	4 cut(s)	199, 223, 318, 332
ScrFI	CCNGG	2 cut(s)	100, 291
SetI	ASST	7 cut(s)	160, 228, 237, 363, 390, 435, 443
SfaAI	GCGATCGC	1 cut(s)	183
SfaNI	GCATC	4 cut(s)	127, 255, 276, 391
SfoI	GGCGCC	1 cut(s)	489
SgfI	GCGATCGC	1 cut(s)	183
SinI	GGWCC	2 cut(s)	223, 332
Sse9I	AATT	2 cut(s)	124, 248
SsiI	CCGC	5 cut(s)	185, 306, 338, 341, 527
SspDI	GGCGCC	1 cut(s)	487
StyD4I	CCNGG	2 cut(s)	98, 289
StyI	CCWWGG	1 cut(s)	468
TaaI	ACNGT	2 cut(s)	15, 172
TaiI	ACGT	1 cut(s)	443
TaqI	TCGA	2 cut(s)	390, 533
TasI	AATT	2 cut(s)	124, 248
TauI	GCSGC	3 cut(s)	309, 341, 344
TfiI	GAWTC	2 cut(s)	392, 530
Tru1I	TTAA	1 cut(s)	426
Tru9I	TTAA	1 cut(s)	426
TseI	GCWGC	2 cut(s)	404, 407
TspDTI	ATGAA	2 cut(s)	7, 563
TspGWI	ACGGA	2 cut(s)	150, 245
Tth111I	GACNNNGTC	1 cut(s)	172
VpaK11BI	GGWCC	2 cut(s)	223, 332
XagI	CCTNNNNNAGG	1 cut(s)	230
XcmI	CCANNNNNNNNNTGG	2 cut(s)	475, 571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.