Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0012426

Physical Location & Seq

Genomic Coordinates Forward (+)

80399901 .. 80401561

Gene Structure 1661 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00142300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAGATATTTACGATTCATTTCCCCACATCTTTCTCGAATTCACAAAACCCTCCCCCAGAACCCTAATCTCCACTCAAGACCCTATCTCTCCTCCCACTTCGCCGCCACTTACACCACCGCCGCGCCCGAGAAGGTCTCGGCGATCGCGGACGAGATCTCCGGGCTCACTCTGCTCGAGGTCTCGGACCTGACGGAGGTGCTGAGAGAGAAACTGGGGATAAAGGAGATGCCGGCGATGATGATGATGATGCCGGGGATGGGAATCGGCGGCCTCCGGGGCGCCGGCAAGGGCGGCGGCGCGGCGGCGGGGAAGGCGGAGGAGAAGAAGGAGAAGACGGCGTTTGATGTGAAGCTTGATTCTTTTGATGCGGCGGCGAAGATTAAAGTGATTAAGGAGGTGAGGACGTTTACGGCGTTGGGGTTGAAGGAGGCTAAGGACTTGGTGGAGAAGGCACCTACGCTGTTGAAGAAGGGGGTTACGAAGGAGGAGGCGGAATCGATTGTGGCGAAGATGAAGGAAGTTGGTGCTGTAGTTTCGATGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0031974 GO:0032543 GO:0032991 GO:0034641 GO:0034645 GO:0042645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:0140053 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L12 Ribosomal_L12_N

Protein Analysis

182

Amino Acids

19.64

Weight (kDa)

9.3

Isoelectric Point (pI)

32.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L12_N	PF16320	46 - 90	9.1e-10	Ribosomal protein L7/L12 dimerisation domain
Ribosomal_L12	PF00542	115 - 181	5e-24	Ribosomal protein L7/L12 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36420
fragaria_vesca	FvH4_1g12480 FvH4_1g12480
malus_domestica	MD02G1138800.v1.1 MD02G1139200.v1.1 MD15G1252100.v1.1
prunus_persica	Prupe.7G162000_v2.0.a1 Prupe.8G072700_v2.0.a1 Prupe.8G072700_v2.0.a1 Prupe.8G072700_v2.0.a1 Prupe.8G072700_v2.0.a1 Prupe.8G072700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0100351
rosa_laevigata	RLG00000016968
rosa_multiflora	Rmu_sc0004164.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142300
rosa_rugosa	Rorug02G0087800
rosa_samantha	Rh2CG142300
rosa_wichuraiana	Rw2G010720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	281, 454
AccII	CGCG	3 cut(s)	125, 149, 302
AcsI	RAATTY	1 cut(s)	39
AcyI	GRCGYC	1 cut(s)	282
AfiI	CCNNNNNNNGG	2 cut(s)	196, 260
AgsI	TTSAA	2 cut(s)	427, 469
AluBI	AGCT	1 cut(s)	355
AluI	AGCT	1 cut(s)	355
Alw26I	GTCTC	2 cut(s)	142, 187
Ama87I	CYCGRG	2 cut(s)	128, 176
AoxI	GGCC	1 cut(s)	271
ApoI	RAATTY	1 cut(s)	39
AsiSI	GCGATCGC	1 cut(s)	147
AspLEI	GCGC	3 cut(s)	127, 284, 302
AspS9I	GGNCC	1 cut(s)	187
AsuC2I	CCSGG	3 cut(s)	163, 255, 278
AsuHPI	GGTGA	1 cut(s)	412
AvaI	CYCGRG	2 cut(s)	128, 176
AvaII	GGWCC	1 cut(s)	187
BanI	GGYRCC	2 cut(s)	281, 454
BanII	GRGCYC	1 cut(s)	168
BbsI	GAAGAC	1 cut(s)	341
BccI	CCATC	2 cut(s)	253, 535
BceAI	ACGGC	2 cut(s)	354, 429
BcnI	CCSGG	3 cut(s)	163, 255, 278
BcoDI	GTCTC	2 cut(s)	142, 187
BfmI	CTRYAG	1 cut(s)	531
BfoI	RGCGCY	1 cut(s)	285
BglI	GCCNNNNNGGC	1 cut(s)	279
BglII	AGATCT	1 cut(s)	156
BisI	GCNGC	9 cut(s)	105, 123, 271, 295, 298, 303, 306, 372, 375
BlsI	GCNGC	9 cut(s)	106, 124, 272, 296, 299, 304, 307, 373, 376
Bme1390I	CCNGG	3 cut(s)	163, 255, 278
Bme18I	GGWCC	1 cut(s)	187
BmeT110I	CYCGRG	2 cut(s)	128, 176
BmgT120I	GGNCC	1 cut(s)	187
BmiI	GGNNCC	2 cut(s)	283, 456
BmrFI	CCNGG	3 cut(s)	163, 255, 278
BmrI	ACTGGG	1 cut(s)	224
BmsI	GCATC	3 cut(s)	219, 240, 358
BmuI	ACTGGG	1 cut(s)	224
BpiI	GAAGAC	1 cut(s)	341
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
Bpu10I	CCTNAGC	1 cut(s)	435
BpuEI	CTTGAG	1 cut(s)	61
BpuMI	CCSGG	3 cut(s)	163, 255, 278
Bsa29I	ATCGAT	1 cut(s)	500
BsaBI	GATNNNNATC	1 cut(s)	263
BsaHI	GRCGYC	1 cut(s)	282
BsaI	GGTCTC	2 cut(s)	142, 187
BsaJI	CCNNGG	2 cut(s)	254, 277
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 260
Bse118I	RCCGGY	2 cut(s)	232, 284
Bse1I	ACTGG	1 cut(s)	219
Bse8I	GATNNNNATC	1 cut(s)	263
BseCI	ATCGAT	1 cut(s)	500
BseDI	CCNNGG	2 cut(s)	254, 277
BseGI	GGATG	1 cut(s)	264
BseJI	GATNNNNATC	1 cut(s)	263
BseLI	CCNNNNNNNGG	2 cut(s)	196, 260
BseMII	CTCAG	1 cut(s)	194
BseNI	ACTGG	1 cut(s)	219
BseRI	GAGGAG	3 cut(s)	82, 335, 503
Bsh1236I	CGCG	3 cut(s)	125, 149, 302
Bsh1285I	CGRYCG	1 cut(s)	147
BshFI	GGCC	1 cut(s)	273
BshNI	GGYRCC	2 cut(s)	281, 454
BshVI	ATCGAT	1 cut(s)	500
BsiEI	CGRYCG	1 cut(s)	147
BsiHKCI	CYCGRG	2 cut(s)	128, 176
BsiSI	CCGG	5 cut(s)	162, 233, 254, 277, 285
BslI	CCNNNNNNNGG	2 cut(s)	196, 260
BsmAI	GTCTC	2 cut(s)	142, 187
BsnI	GGCC	1 cut(s)	273
Bso31I	GGTCTC	2 cut(s)	142, 187
BsoBI	CYCGRG	2 cut(s)	128, 176
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp143I	GATC	2 cut(s)	144, 156
BspANI	GGCC	1 cut(s)	273
BspCNI	CTCAG	1 cut(s)	195
BspDI	ATCGAT	1 cut(s)	500
BspFNI	CGCG	3 cut(s)	125, 149, 302
BspLI	GGNNCC	2 cut(s)	283, 456
BspT107I	GGYRCC	2 cut(s)	281, 454
BspTNI	GGTCTC	2 cut(s)	142, 187
BsrFI	RCCGGY	2 cut(s)	232, 284
BsrI	ACTGG	1 cut(s)	219
BssAI	RCCGGY	2 cut(s)	232, 284
BssECI	CCNNGG	2 cut(s)	254, 277
BssMI	GATC	2 cut(s)	144, 156
BssNI	GRCGYC	1 cut(s)	282
BstACI	GRCGYC	1 cut(s)	282
BstC8I	GCNNGC	2 cut(s)	234, 286
BstDEI	CTNAG	2 cut(s)	203, 435
BstENI	CCTNNNNNAGG	1 cut(s)	194
BstF5I	GGATG	1 cut(s)	264
BstFNI	CGCG	3 cut(s)	125, 149, 302
BstH2I	RGCGCY	1 cut(s)	285
BstHHI	GCGC	3 cut(s)	127, 284, 302
BstKTI	GATC	2 cut(s)	147, 159
BstMAI	GTCTC	2 cut(s)	142, 187
BstMBI	GATC	2 cut(s)	144, 156
BstMCI	CGRYCG	1 cut(s)	147
BstMWI	GCNNNNNNNGC	4 cut(s)	172, 279, 294, 314
BstSCI	CCNGG	3 cut(s)	161, 253, 276
BstSFI	CTRYAG	1 cut(s)	531
BstUI	CGCG	3 cut(s)	125, 149, 302
BstV2I	GAAGAC	1 cut(s)	341
BstX2I	RGATCY	1 cut(s)	156
BstYI	RGATCY	1 cut(s)	156
Bsu15I	ATCGAT	1 cut(s)	500
BsuRI	GGCC	1 cut(s)	273
BsuTUI	ATCGAT	1 cut(s)	500
BtgZI	GCGATG	1 cut(s)	251
BtsCI	GGATG	1 cut(s)	264
Cac8I	GCNNGC	2 cut(s)	234, 286
CfoI	GCGC	3 cut(s)	127, 284, 302
Cfr10I	RCCGGY	2 cut(s)	232, 284
Cfr13I	GGNCC	1 cut(s)	187
ClaI	ATCGAT	1 cut(s)	500
CviJI	RGCY	4 cut(s)	166, 273, 355, 434
CviKI_1	RGCY	4 cut(s)	166, 273, 355, 434
DdeI	CTNAG	2 cut(s)	203, 435
DinI	GGCGCC	1 cut(s)	283
DpnI	GATC	2 cut(s)	146, 158
DpnII	GATC	2 cut(s)	144, 156
EciI	GGCGGA	2 cut(s)	332, 509
Eco24I	GRGCYC	1 cut(s)	168
Eco31I	GGTCTC	2 cut(s)	142, 187
Eco47I	GGWCC	1 cut(s)	187
Eco88I	CYCGRG	2 cut(s)	128, 176
EcoNI	CCTNNNNNAGG	1 cut(s)	194
EcoRI	GAATTC	1 cut(s)	39
EcoT38I	GRGCYC	1 cut(s)	168
EgeI	GGCGCC	1 cut(s)	283
EheI	GGCGCC	1 cut(s)	283
FauI	CCCGC	1 cut(s)	301
Fnu4HI	GCNGC	9 cut(s)	105, 123, 271, 295, 298, 303, 306, 372, 375
FokI	GGATG	1 cut(s)	271
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	9 cut(s)	105, 123, 271, 295, 298, 303, 306, 372, 375
GlaI	GCGC	3 cut(s)	126, 283, 301
GluI	GCNGC	9 cut(s)	105, 123, 271, 295, 298, 303, 306, 372, 375
HaeII	RGCGCY	1 cut(s)	285
HaeIII	GGCC	1 cut(s)	273
HapII	CCGG	5 cut(s)	162, 233, 254, 277, 285
HhaI	GCGC	3 cut(s)	127, 284, 302
Hin1I	GRCGYC	1 cut(s)	282
Hin6I	GCGC	3 cut(s)	125, 282, 300
HinP1I	GCGC	3 cut(s)	125, 282, 300
HindIII	AAGCTT	1 cut(s)	353
HinfI	GANTC	4 cut(s)	15, 264, 359, 497
HpaII	CCGG	5 cut(s)	162, 233, 254, 277, 285
HphI	GGTGA	1 cut(s)	412
Hpy166II	GTNNAC	1 cut(s)	411
Hpy188I	TCNGA	1 cut(s)	187
Hpy188III	TCNNGA	2 cut(s)	36, 78
Hpy8I	GTNNAC	1 cut(s)	411
HpyAV	CCTTC	8 cut(s)	127, 307, 322, 421, 445, 466, 478, 511
HpyCH4IV	ACGT	1 cut(s)	407
HpyF10VI	GCNNNNNNNGC	4 cut(s)	172, 279, 294, 314
HpyF3I	CTNAG	2 cut(s)	203, 435
HpySE526I	ACGT	1 cut(s)	407
Hsp92I	GRCGYC	1 cut(s)	282
HspAI	GCGC	3 cut(s)	125, 282, 300
KasI	GGCGCC	1 cut(s)	281
KroI	GCCGGC	2 cut(s)	232, 284
KroNI	GCCGGC	2 cut(s)	234, 286
Kzo9I	GATC	2 cut(s)	144, 156
LpnPI	CCDG	8 cut(s)	71, 175, 200, 203, 246, 267, 290, 298
LweI	GCATC	3 cut(s)	219, 240, 358
MaeII	ACGT	1 cut(s)	407
MaeIII	GTNAC	1 cut(s)	478
MalI	GATC	2 cut(s)	146, 158
MboI	GATC	2 cut(s)	144, 156
MboII	GAAGA	5 cut(s)	337, 346, 391, 481, 523
MflI	RGATCY	1 cut(s)	156
MhlI	GDGCHC	1 cut(s)	168
MluCI	AATT	1 cut(s)	39
Mly113I	GGCGCC	1 cut(s)	282
MroNI	GCCGGC	2 cut(s)	232, 284
MseI	TTAA	2 cut(s)	384, 393
MspI	CCGG	5 cut(s)	162, 233, 254, 277, 285
MspR9I	CCNGG	3 cut(s)	163, 255, 278
MvnI	CGCG	3 cut(s)	125, 149, 302
MwoI	GCNNNNNNNGC	4 cut(s)	172, 279, 294, 314
NaeI	GCCGGC	2 cut(s)	234, 286
NarI	GGCGCC	1 cut(s)	282
NciI	CCSGG	3 cut(s)	163, 255, 278
NdeII	GATC	2 cut(s)	144, 156
NgoMIV	GCCGGC	2 cut(s)	232, 284
NlaIV	GGNNCC	2 cut(s)	283, 456
NmeAIII	GCCGAG	1 cut(s)	119
PaeR7I	CTCGAG	1 cut(s)	176
PcsI	WCGNNNNNNNCGW	2 cut(s)	413, 506
PdiI	GCCGGC	2 cut(s)	234, 286
PfeI	GAWTC	4 cut(s)	15, 264, 359, 497
PkrI	GCNGC	9 cut(s)	106, 124, 272, 296, 299, 304, 307, 373, 376
Ple19I	CGATCG	1 cut(s)	147
PluTI	GGCGCC	1 cut(s)	285
PspN4I	GGNNCC	2 cut(s)	283, 456
PspPI	GGNCC	1 cut(s)	187
PspXI	VCTCGAGB	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	156
PvuI	CGATCG	1 cut(s)	147
RgaI	GCGATCGC	1 cut(s)	147
SaqAI	TTAA	2 cut(s)	384, 393
SatI	GCNGC	9 cut(s)	105, 123, 271, 295, 298, 303, 306, 372, 375
Sau3AI	GATC	2 cut(s)	144, 156
Sau96I	GGNCC	1 cut(s)	187
ScrFI	CCNGG	3 cut(s)	163, 255, 278
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	8 cut(s)	138, 183, 192, 201, 357, 402, 410, 460
SfaAI	GCGATCGC	1 cut(s)	147
SfaNI	GCATC	3 cut(s)	219, 240, 358
SfcI	CTRYAG	1 cut(s)	531
SfoI	GGCGCC	1 cut(s)	283
Sfr274I	CTCGAG	1 cut(s)	176
SgfI	GCGATCGC	1 cut(s)	147
SinI	GGWCC	1 cut(s)	187
SlaI	CTCGAG	1 cut(s)	176
SmlI	CTYRAG	2 cut(s)	76, 176
SmoI	CTYRAG	2 cut(s)	76, 176
Sse9I	AATT	1 cut(s)	39
SspDI	GGCGCC	1 cut(s)	281
StyD4I	CCNGG	3 cut(s)	161, 253, 276
TaiI	ACGT	1 cut(s)	410
TaqI	TCGA	4 cut(s)	37, 177, 500, 539
TasI	AATT	1 cut(s)	39
TauI	GCSGC	9 cut(s)	107, 125, 273, 297, 300, 305, 308, 374, 377
TfiI	GAWTC	4 cut(s)	15, 264, 359, 497
Tru1I	TTAA	2 cut(s)	384, 393
Tru9I	TTAA	2 cut(s)	384, 393
TspDTI	ATGAA	2 cut(s)	7, 530
TspGWI	ACGGA	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	187
XagI	CCTNNNNNAGG	1 cut(s)	194
XapI	RAATTY	1 cut(s)	39
XhoI	CTCGAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.