Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0012426

Physical Location & Seq

Genomic Coordinates Forward (+)

16768565 .. 16771825

Gene Structure 3261 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G162000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGAGATATTTACGGTTCATTTCCCCACATTTTTCTCGTATTCACAAAACCCTAAACCCACAAAGCCCTCCTCTATCCTCTCTCCAATCAAAGCCCCAGATTAGTTCTCATTTCGTGTGCAATTACACCACCGCTGCACCGGAGCAACGGCCACCTCCGTCCGAGACGGTATCGGCGATCGCGGATGAGATCTCGGGCCTGACTTTGCTCGAAGTCTCGGACCTCACGGAGGTTCTGAGGGAGAAATTGGGCATAAAGGAGATGCCTGTGATGGCGATGATGATGCCGGGGATGGGATTTGGCGGCTTGAAAGGCGCCGGCAAAGGTGGTCCGGCGGCGGCTAAAGGCGAGGAGAAGGTGGAGAAGACGGCTTTTGATGTAAAGCTCGATTCTTTTGATGCTGCAGCGAAGATCAAAGTGATTAAGGAGGTGAGGACGTTTACGAGTTTGGGGCTGAAGGAGGCCAAGGACTTGGTGGAGAAGGCGCCTACGCTGTTGAAGAAGGGGGTTACGAAAGAGGAGGCGGATTCGATTGTCGCGAAGATGAAGGAAGTTGGTGCCAAAGTTTCTATGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0031974 GO:0032543 GO:0032991 GO:0034641 GO:0034645 GO:0042645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:0140053 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L12 Ribosomal_L12_N

Protein Analysis

193

Amino Acids

20.74

Weight (kDa)

9.06

Isoelectric Point (pI)

44.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36420
fragaria_vesca	FvH4_1g12480 FvH4_1g12480
malus_domestica	MD02G1138800.v1.1 MD02G1139200.v1.1 MD15G1252100.v1.1
prunus_persica	Prupe.7G162000_v2.0.a1 Prupe.8G072700_v2.0.a1 Prupe.8G072700_v2.0.a1 Prupe.8G072700_v2.0.a1 Prupe.8G072700_v2.0.a1 Prupe.8G072700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0100351
rosa_laevigata	RLG00000016968
rosa_multiflora	Rmu_sc0004164.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142300
rosa_rugosa	Rorug02G0087800
rosa_samantha	Rh2CG142300
rosa_wichuraiana	Rw2G010720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	314, 484, 557
AccII	CGCG	2 cut(s)	182, 539
AciI	CCGC	6 cut(s)	132, 182, 303, 335, 338, 524
AcoI	YGGCCR	1 cut(s)	149
AcuI	CTGAAG	1 cut(s)	476
AcyI	GRCGYC	2 cut(s)	315, 485
AfiI	CCNNNNNNNGG	2 cut(s)	229, 293
AgsI	TTSAA	2 cut(s)	310, 499
AluBI	AGCT	1 cut(s)	385
AluI	AGCT	1 cut(s)	385
Alw26I	GTCTC	2 cut(s)	158, 220
Ama87I	CYCGRG	1 cut(s)	193
AoxI	GGCC	3 cut(s)	149, 196, 462
ApeKI	GCWGC	3 cut(s)	134, 401, 404
AsiSI	GCGATCGC	1 cut(s)	180
AspLEI	GCGC	2 cut(s)	317, 487
AspS9I	GGNCC	3 cut(s)	196, 220, 329
AsuC2I	CCSGG	1 cut(s)	288
AsuHPI	GGTGA	1 cut(s)	442
AvaI	CYCGRG	1 cut(s)	193
AvaII	GGWCC	2 cut(s)	220, 329
BanI	GGYRCC	3 cut(s)	314, 484, 557
BbsI	GAAGAC	1 cut(s)	371
BbvI	GCAGC	3 cut(s)	121, 388, 416
BccI	CCATC	2 cut(s)	265, 286
BceAI	ACGGC	2 cut(s)	164, 384
BcgI	CGANNNNNNTGC	2 cut(s)	265, 299
BcnI	CCSGG	1 cut(s)	288
BcoDI	GTCTC	2 cut(s)	158, 220
BfmI	CTRYAG	1 cut(s)	402
BfoI	RGCGCY	2 cut(s)	318, 488
BglII	AGATCT	1 cut(s)	189
BisI	GCNGC	6 cut(s)	135, 304, 336, 339, 402, 405
BlsI	GCNGC	6 cut(s)	136, 305, 337, 340, 403, 406
Bme1390I	CCNGG	1 cut(s)	288
Bme18I	GGWCC	2 cut(s)	220, 329
BmeT110I	CYCGRG	1 cut(s)	193
BmgT120I	GGNCC	3 cut(s)	196, 220, 329
BmiI	GGNNCC	3 cut(s)	316, 486, 559
BmrFI	CCNGG	1 cut(s)	288
BmsI	GCATC	3 cut(s)	252, 273, 388
BpiI	GAAGAC	1 cut(s)	371
BpuMI	CCSGG	1 cut(s)	288
BsaHI	GRCGYC	2 cut(s)	315, 485
BsaJI	CCNNGG	2 cut(s)	287, 465
BsaWI	WCCGGW	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	2 cut(s)	229, 293
Bse118I	RCCGGY	1 cut(s)	317
BseDI	CCNNGG	2 cut(s)	287, 465
BseGI	GGATG	2 cut(s)	190, 297
BseLI	CCNNNNNNNGG	2 cut(s)	229, 293
BseMII	CTCAG	1 cut(s)	227
BseRI	GAGGAG	3 cut(s)	60, 365, 533
BseXI	GCAGC	3 cut(s)	121, 388, 416
BsgI	GTGCAG	1 cut(s)	120
Bsh1236I	CGCG	2 cut(s)	182, 539
Bsh1285I	CGRYCG	1 cut(s)	180
BshFI	GGCC	3 cut(s)	151, 198, 464
BshNI	GGYRCC	3 cut(s)	314, 484, 557
BsiEI	CGRYCG	1 cut(s)	180
BsiHKCI	CYCGRG	1 cut(s)	193
BsiSI	CCGG	4 cut(s)	140, 287, 318, 332
BslI	CCNNNNNNNGG	2 cut(s)	229, 293
BsmAI	GTCTC	2 cut(s)	158, 220
BsmBI	CGTCTC	1 cut(s)	158
BsnI	GGCC	3 cut(s)	151, 198, 464
BsoBI	CYCGRG	1 cut(s)	193
Bsp143I	GATC	3 cut(s)	177, 189, 411
Bsp68I	TCGCGA	1 cut(s)	539
BspACI	CCGC	6 cut(s)	132, 182, 303, 335, 338, 524
BspANI	GGCC	3 cut(s)	151, 198, 464
BspCNI	CTCAG	1 cut(s)	228
BspFNI	CGCG	2 cut(s)	182, 539
BspLI	GGNNCC	3 cut(s)	316, 486, 559
BspMAI	CTGCAG	1 cut(s)	406
BspT107I	GGYRCC	3 cut(s)	314, 484, 557
BsrFI	RCCGGY	1 cut(s)	317
BssAI	RCCGGY	1 cut(s)	317
BssECI	CCNNGG	2 cut(s)	287, 465
BssMI	GATC	3 cut(s)	177, 189, 411
BssNI	GRCGYC	2 cut(s)	315, 485
BssT1I	CCWWGG	1 cut(s)	465
Bst4CI	ACNGT	2 cut(s)	15, 169
BstACI	GRCGYC	2 cut(s)	315, 485
BstC8I	GCNNGC	1 cut(s)	319
BstDEI	CTNAG	1 cut(s)	236
BstENI	CCTNNNNNAGG	1 cut(s)	227
BstF5I	GGATG	2 cut(s)	190, 297
BstFNI	CGCG	2 cut(s)	182, 539
BstH2I	RGCGCY	2 cut(s)	318, 488
BstHHI	GCGC	2 cut(s)	317, 487
BstKTI	GATC	3 cut(s)	180, 192, 414
BstMAI	GTCTC	2 cut(s)	158, 220
BstMBI	GATC	3 cut(s)	177, 189, 411
BstMCI	CGRYCG	1 cut(s)	180
BstMWI	GCNNNNNNNGC	1 cut(s)	312
BstSCI	CCNGG	1 cut(s)	286
BstSFI	CTRYAG	1 cut(s)	402
BstUI	CGCG	2 cut(s)	182, 539
BstV1I	GCAGC	3 cut(s)	121, 388, 416
BstV2I	GAAGAC	1 cut(s)	371
BstX2I	RGATCY	1 cut(s)	189
BstXI	CCANNNNNNTGG	1 cut(s)	472
BstYI	RGATCY	1 cut(s)	189
BsuRI	GGCC	3 cut(s)	151, 198, 464
BtgZI	GCGATG	1 cut(s)	290
BtsCI	GGATG	2 cut(s)	190, 297
BtuMI	TCGCGA	1 cut(s)	539
Cac8I	GCNNGC	1 cut(s)	319
CfoI	GCGC	2 cut(s)	317, 487
Cfr10I	RCCGGY	1 cut(s)	317
Cfr13I	GGNCC	3 cut(s)	196, 220, 329
DdeI	CTNAG	1 cut(s)	236
DinI	GGCGCC	2 cut(s)	316, 486
DpnI	GATC	3 cut(s)	179, 191, 413
DpnII	GATC	3 cut(s)	177, 189, 411
EaeI	YGGCCR	1 cut(s)	149
EciI	GGCGGA	1 cut(s)	539
Eco130I	CCWWGG	1 cut(s)	465
Eco47I	GGWCC	2 cut(s)	220, 329
Eco57I	CTGAAG	1 cut(s)	476
Eco88I	CYCGRG	1 cut(s)	193
EcoNI	CCTNNNNNAGG	1 cut(s)	227
EcoT14I	CCWWGG	1 cut(s)	465
EgeI	GGCGCC	2 cut(s)	316, 486
EheI	GGCGCC	2 cut(s)	316, 486
ErhI	CCWWGG	1 cut(s)	465
Esp3I	CGTCTC	1 cut(s)	158
FaiI	YATR	2 cut(s)	254, 572
Fnu4HI	GCNGC	6 cut(s)	135, 304, 336, 339, 402, 405
FokI	GGATG	2 cut(s)	197, 304
Fsp4HI	GCNGC	6 cut(s)	135, 304, 336, 339, 402, 405
GlaI	GCGC	2 cut(s)	316, 486
GluI	GCNGC	6 cut(s)	135, 304, 336, 339, 402, 405
HaeII	RGCGCY	2 cut(s)	318, 488
HaeIII	GGCC	3 cut(s)	151, 198, 464
HapII	CCGG	4 cut(s)	140, 287, 318, 332
HhaI	GCGC	2 cut(s)	317, 487
Hin1I	GRCGYC	2 cut(s)	315, 485
Hin6I	GCGC	2 cut(s)	315, 485
HinP1I	GCGC	2 cut(s)	315, 485
HinfI	GANTC	2 cut(s)	389, 527
HpaII	CCGG	4 cut(s)	140, 287, 318, 332
HphI	GGTGA	1 cut(s)	442
Hpy166II	GTNNAC	1 cut(s)	441
Hpy188I	TCNGA	3 cut(s)	163, 220, 237
Hpy188III	TCNNGA	1 cut(s)	538
Hpy8I	GTNNAC	1 cut(s)	441
HpyAV	CCTTC	5 cut(s)	349, 451, 475, 496, 541
HpyCH4III	ACNGT	2 cut(s)	15, 169
HpyCH4IV	ACGT	1 cut(s)	437
HpyCH4V	TGCA	3 cut(s)	120, 137, 404
HpyF10VI	GCNNNNNNNGC	1 cut(s)	312
HpyF3I	CTNAG	1 cut(s)	236
HpySE526I	ACGT	1 cut(s)	437
Hsp92I	GRCGYC	2 cut(s)	315, 485
HspAI	GCGC	2 cut(s)	315, 485
KasI	GGCGCC	2 cut(s)	314, 484
KroI	GCCGGC	1 cut(s)	317
KroNI	GCCGGC	1 cut(s)	319
Kzo9I	GATC	3 cut(s)	177, 189, 411
LmnI	GCTCC	1 cut(s)	142
LpnPI	CCDG	7 cut(s)	110, 153, 212, 279, 300, 331, 345
Lsp1109I	GCAGC	3 cut(s)	121, 388, 416
LweI	GCATC	3 cut(s)	252, 273, 388
MaeII	ACGT	1 cut(s)	437
MaeIII	GTNAC	1 cut(s)	508
MalI	GATC	3 cut(s)	179, 191, 413
MboI	GATC	3 cut(s)	177, 189, 411
MboII	GAAGA	4 cut(s)	376, 421, 511, 553
MflI	RGATCY	1 cut(s)	189
MluCI	AATT	2 cut(s)	121, 245
Mly113I	GGCGCC	2 cut(s)	315, 485
MroNI	GCCGGC	1 cut(s)	317
MseI	TTAA	1 cut(s)	423
MspA1I	CMGCKG	1 cut(s)	134
MspI	CCGG	4 cut(s)	140, 287, 318, 332
MspR9I	CCNGG	1 cut(s)	288
MvnI	CGCG	2 cut(s)	182, 539
MwoI	GCNNNNNNNGC	1 cut(s)	312
NaeI	GCCGGC	1 cut(s)	319
NarI	GGCGCC	2 cut(s)	315, 485
NciI	CCSGG	1 cut(s)	288
NdeII	GATC	3 cut(s)	177, 189, 411
NgoMIV	GCCGGC	1 cut(s)	317
NlaIV	GGNNCC	3 cut(s)	316, 486, 559
NruI	TCGCGA	1 cut(s)	539
PcsI	WCGNNNNNNNCGW	2 cut(s)	173, 536
PdiI	GCCGGC	1 cut(s)	319
PfeI	GAWTC	2 cut(s)	389, 527
PkrI	GCNGC	6 cut(s)	136, 305, 337, 340, 403, 406
Ple19I	CGATCG	1 cut(s)	180
PluTI	GGCGCC	2 cut(s)	318, 488
PspN4I	GGNNCC	3 cut(s)	316, 486, 559
PspPI	GGNCC	3 cut(s)	196, 220, 329
PstI	CTGCAG	1 cut(s)	406
PsuI	RGATCY	1 cut(s)	189
PvuI	CGATCG	1 cut(s)	180
RgaI	GCGATCGC	1 cut(s)	180
RruI	TCGCGA	1 cut(s)	539
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	6 cut(s)	135, 304, 336, 339, 402, 405
Sau3AI	GATC	3 cut(s)	177, 189, 411
Sau96I	GGNCC	3 cut(s)	196, 220, 329
ScrFI	CCNGG	1 cut(s)	288
SetI	ASST	8 cut(s)	157, 225, 234, 328, 360, 387, 432, 440
SfaAI	GCGATCGC	1 cut(s)	180
SfaNI	GCATC	3 cut(s)	252, 273, 388
SfcI	CTRYAG	1 cut(s)	402
SfoI	GGCGCC	2 cut(s)	316, 486
SgfI	GCGATCGC	1 cut(s)	180
SinI	GGWCC	2 cut(s)	220, 329
Sse9I	AATT	2 cut(s)	121, 245
SsiI	CCGC	6 cut(s)	132, 182, 303, 335, 338, 524
SspDI	GGCGCC	2 cut(s)	314, 484
StyD4I	CCNGG	1 cut(s)	286
StyI	CCWWGG	1 cut(s)	465
TaaI	ACNGT	2 cut(s)	15, 169
TaiI	ACGT	1 cut(s)	440
TaqI	TCGA	3 cut(s)	210, 387, 530
TasI	AATT	2 cut(s)	121, 245
TauI	GCSGC	3 cut(s)	306, 338, 341
TfiI	GAWTC	2 cut(s)	389, 527
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TseI	GCWGC	3 cut(s)	134, 401, 404
TspDTI	ATGAA	2 cut(s)	7, 560
TspGWI	ACGGA	2 cut(s)	147, 242
VpaK11BI	GGWCC	2 cut(s)	220, 329
XagI	CCTNNNNNAGG	1 cut(s)	227
XcmI	CCANNNNNNNNNTGG	2 cut(s)	472, 568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.