Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012426

Physical Location & Seq

Genomic Coordinates Reverse (-)

12324276 .. 12326774

Gene Structure 2499 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47499

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGAGATATTTACGATTCATTTCCCCACATCTTTCTCGAATTCACAAAACCCTCCCCCAGAACCCTAATCTCCACTCAAGACCCTATCTTTCCTCCCATTTCGCCGCCTCTTACACCACCGCCGCGCCGGAGAAGAGACCTGCGCCGCCGGAGAAGGTCTCGGCGATCGCGGACGAGATCTCCGGGCTCACTCTGCTCGAGGTCTCGGACCTGACGGAGGTCCTGAGAGAGAAACTGGGGATAAAGGAGATGCCGGCGATGATGATGATGATGCCGGGGATGGGAATCGGCGGGCTCCGGGGCGGCGGCAAGGGCGGCGGCGCGGCGGCGGGGAAGGCGGAGGAGAAGAAGGAGAAGACGGCGTTTGATGTGAAGCTTGATTCTTTTGATGCGGCGGCGAAGATTAAAGTGATTAAGGAGGTGAGGACGTTTACGGCGTTGGGGTTGAAGGAGGCTAAGGACTTGGTGGAGAAGGCACCTACGCTGTTGAAGAAGGGGGTGACGAAGGAGGAGGCGGAGTCGATTGTGGCGAAGATGAAGGAAGTTGGTGCTGTAGTTTCGATGGAACTCATGAGTTGGAGAGACATAAAGAAGCGCAACGCACTAGCCTCAAGGATTGTTAAAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0031974 GO:0032543 GO:0032991 GO:0034641 GO:0034645 GO:0042645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:0140053 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L12 Ribosomal_L12_N

Protein Analysis

209

Amino Acids

22.79

Weight (kDa)

9.74

Isoelectric Point (pI)

43.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L12_N	PF16320	53 - 95	3e-10	Ribosomal protein L7/L12 dimerisation domain
Ribosomal_L12	PF00542	122 - 188	6.7e-24	Ribosomal protein L7/L12 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36420
fragaria_vesca	FvH4_1g12480 FvH4_1g12480
malus_domestica	MD02G1138800.v1.1 MD02G1139200.v1.1 MD15G1252100.v1.1
prunus_persica	Prupe.7G162000_v2.0.a1 Prupe.8G072700_v2.0.a1 Prupe.8G072700_v2.0.a1 Prupe.8G072700_v2.0.a1 Prupe.8G072700_v2.0.a1 Prupe.8G072700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0100351
rosa_laevigata	RLG00000016968
rosa_multiflora	Rmu_sc0004164.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142300
rosa_rugosa	Rorug02G0087800
rosa_samantha	Rh2CG142300
rosa_wichuraiana	Rw2G010720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	148
AccB1I	GGYRCC	1 cut(s)	475
AccII	CGCG	3 cut(s)	125, 170, 323
AcsI	RAATTY	1 cut(s)	39
AfiI	CCNNNNNNNGG	2 cut(s)	217, 281
AgsI	TTSAA	2 cut(s)	448, 490
AluBI	AGCT	1 cut(s)	376
AluI	AGCT	1 cut(s)	376
Alw26I	GTCTC	4 cut(s)	130, 163, 208, 576
Ama87I	CYCGRG	1 cut(s)	197
ApoI	RAATTY	1 cut(s)	39
AsiSI	GCGATCGC	1 cut(s)	168
AspLEI	GCGC	4 cut(s)	127, 145, 323, 597
AspS9I	GGNCC	2 cut(s)	208, 220
AsuC2I	CCSGG	3 cut(s)	184, 276, 299
AsuHPI	GGTGA	2 cut(s)	433, 511
AvaI	CYCGRG	1 cut(s)	197
AvaII	GGWCC	2 cut(s)	208, 220
BanI	GGYRCC	1 cut(s)	475
BanII	GRGCYC	2 cut(s)	189, 297
BbsI	GAAGAC	1 cut(s)	362
BccI	CCATC	2 cut(s)	274, 556
BceAI	ACGGC	2 cut(s)	375, 450
BcnI	CCSGG	3 cut(s)	184, 276, 299
BcoDI	GTCTC	4 cut(s)	130, 163, 208, 576
BfaI	CTAG	1 cut(s)	605
BfmI	CTRYAG	1 cut(s)	552
BfuAI	ACCTGC	1 cut(s)	148
BglII	AGATCT	1 cut(s)	177
Bme1390I	CCNGG	3 cut(s)	184, 276, 299
Bme18I	GGWCC	2 cut(s)	208, 220
BmeT110I	CYCGRG	1 cut(s)	197
BmgT120I	GGNCC	2 cut(s)	208, 220
BmiI	GGNNCC	2 cut(s)	296, 477
BmrFI	CCNGG	3 cut(s)	184, 276, 299
BmrI	ACTGGG	1 cut(s)	245
BmsI	GCATC	3 cut(s)	240, 261, 379
BmuI	ACTGGG	1 cut(s)	245
BoxI	GACNNNNGTC	1 cut(s)	218
BpiI	GAAGAC	1 cut(s)	362
BplI	GAGNNNNNCTC	2 cut(s)	143, 175
Bpu10I	CCTNAGC	1 cut(s)	456
BpuEI	CTTGAG	2 cut(s)	61, 595
BpuMI	CCSGG	3 cut(s)	184, 276, 299
BsaBI	GATNNNNATC	1 cut(s)	284
BsaI	GGTCTC	3 cut(s)	130, 163, 208
BsaJI	CCNNGG	2 cut(s)	275, 298
BsaXI	ACNNNNNCTCC	4 cut(s)	164, 194, 503, 533
Bsc4I	CCNNNNNNNGG	2 cut(s)	217, 281
Bse118I	RCCGGY	1 cut(s)	253
Bse1I	ACTGG	1 cut(s)	240
Bse8I	GATNNNNATC	1 cut(s)	284
BseDI	CCNNGG	2 cut(s)	275, 298
BseGI	GGATG	1 cut(s)	285
BseJI	GATNNNNATC	1 cut(s)	284
BseLI	CCNNNNNNNGG	2 cut(s)	217, 281
BseMII	CTCAG	1 cut(s)	215
BseNI	ACTGG	1 cut(s)	240
BseRI	GAGGAG	2 cut(s)	356, 524
Bsh1236I	CGCG	3 cut(s)	125, 170, 323
Bsh1285I	CGRYCG	1 cut(s)	168
BshNI	GGYRCC	1 cut(s)	475
BsiEI	CGRYCG	1 cut(s)	168
BsiHKCI	CYCGRG	1 cut(s)	197
BsiSI	CCGG	6 cut(s)	128, 149, 183, 254, 275, 298
BslI	CCNNNNNNNGG	2 cut(s)	217, 281
BsmAI	GTCTC	4 cut(s)	130, 163, 208, 576
Bso31I	GGTCTC	3 cut(s)	130, 163, 208
BsoBI	CYCGRG	1 cut(s)	197
Bsp1286I	GDGCHC	2 cut(s)	189, 297
Bsp143I	GATC	2 cut(s)	165, 177
BspCNI	CTCAG	1 cut(s)	216
BspFNI	CGCG	3 cut(s)	125, 170, 323
BspHI	TCATGA	1 cut(s)	570
BspLI	GGNNCC	2 cut(s)	296, 477
BspMI	ACCTGC	1 cut(s)	148
BspT107I	GGYRCC	1 cut(s)	475
BspTNI	GGTCTC	3 cut(s)	130, 163, 208
BsrFI	RCCGGY	1 cut(s)	253
BsrI	ACTGG	1 cut(s)	240
BssAI	RCCGGY	1 cut(s)	253
BssECI	CCNNGG	2 cut(s)	275, 298
BssMI	GATC	2 cut(s)	165, 177
Bst6I	CTCTTC	1 cut(s)	128
BstC8I	GCNNGC	2 cut(s)	255, 293
BstDEI	CTNAG	2 cut(s)	224, 456
BstENI	CCTNNNNNAGG	1 cut(s)	215
BstF5I	GGATG	1 cut(s)	285
BstFNI	CGCG	3 cut(s)	125, 170, 323
BstHHI	GCGC	4 cut(s)	127, 145, 323, 597
BstKTI	GATC	2 cut(s)	168, 180
BstMAI	GTCTC	4 cut(s)	130, 163, 208, 576
BstMBI	GATC	2 cut(s)	165, 177
BstMCI	CGRYCG	1 cut(s)	168
BstMWI	GCNNNNNNNGC	4 cut(s)	193, 312, 315, 335
BstPAI	GACNNNNGTC	1 cut(s)	218
BstSCI	CCNGG	3 cut(s)	182, 274, 297
BstSFI	CTRYAG	1 cut(s)	552
BstUI	CGCG	3 cut(s)	125, 170, 323
BstV2I	GAAGAC	1 cut(s)	362
BstX2I	RGATCY	1 cut(s)	177
BstYI	RGATCY	1 cut(s)	177
BtgZI	GCGATG	1 cut(s)	272
BtsCI	GGATG	1 cut(s)	285
BveI	ACCTGC	1 cut(s)	148
Cac8I	GCNNGC	2 cut(s)	255, 293
CciI	TCATGA	1 cut(s)	570
CfoI	GCGC	4 cut(s)	127, 145, 323, 597
Cfr10I	RCCGGY	1 cut(s)	253
Cfr13I	GGNCC	2 cut(s)	208, 220
CviAII	CATG	1 cut(s)	571
CviJI	RGCY	5 cut(s)	187, 295, 376, 455, 608
CviKI_1	RGCY	5 cut(s)	187, 295, 376, 455, 608
DdeI	CTNAG	2 cut(s)	224, 456
DpnI	GATC	2 cut(s)	167, 179
DpnII	GATC	2 cut(s)	165, 177
Eam1104I	CTCTTC	1 cut(s)	128
EarI	CTCTTC	1 cut(s)	128
EciI	GGCGGA	2 cut(s)	353, 530
Eco24I	GRGCYC	2 cut(s)	189, 297
Eco31I	GGTCTC	3 cut(s)	130, 163, 208
Eco47I	GGWCC	2 cut(s)	208, 220
Eco88I	CYCGRG	1 cut(s)	197
EcoNI	CCTNNNNNAGG	1 cut(s)	215
EcoO109I	RGGNCCY	1 cut(s)	220
EcoRI	GAATTC	1 cut(s)	39
EcoT38I	GRGCYC	2 cut(s)	189, 297
FaeI	CATG	1 cut(s)	574
FaiI	YATR	2 cut(s)	572, 587
FatI	CATG	1 cut(s)	570
FauI	CCCGC	2 cut(s)	284, 322
FokI	GGATG	1 cut(s)	292
FriOI	GRGCYC	2 cut(s)	189, 297
FspBI	CTAG	1 cut(s)	605
GlaI	GCGC	4 cut(s)	126, 144, 322, 596
HapII	CCGG	6 cut(s)	128, 149, 183, 254, 275, 298
HhaI	GCGC	4 cut(s)	127, 145, 323, 597
Hin1II	CATG	1 cut(s)	574
Hin6I	GCGC	4 cut(s)	125, 143, 321, 595
HinP1I	GCGC	4 cut(s)	125, 143, 321, 595
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	4 cut(s)	15, 285, 380, 518
HpaII	CCGG	6 cut(s)	128, 149, 183, 254, 275, 298
HphI	GGTGA	2 cut(s)	433, 511
Hpy166II	GTNNAC	1 cut(s)	432
Hpy188I	TCNGA	1 cut(s)	208
Hpy188III	TCNNGA	4 cut(s)	36, 78, 223, 571
Hpy8I	GTNNAC	1 cut(s)	432
HpyAV	CCTTC	8 cut(s)	148, 328, 343, 442, 466, 487, 499, 532
HpyCH4IV	ACGT	1 cut(s)	428
HpyF10VI	GCNNNNNNNGC	4 cut(s)	193, 312, 315, 335
HpyF3I	CTNAG	2 cut(s)	224, 456
HpySE526I	ACGT	1 cut(s)	428
Hsp92II	CATG	1 cut(s)	574
HspAI	GCGC	4 cut(s)	125, 143, 321, 595
KroI	GCCGGC	1 cut(s)	253
KroNI	GCCGGC	1 cut(s)	255
Kzo9I	GATC	2 cut(s)	165, 177
LmnI	GCTCC	1 cut(s)	300
LweI	GCATC	3 cut(s)	240, 261, 379
MaeI	CTAG	1 cut(s)	605
MaeII	ACGT	1 cut(s)	428
MaeIII	GTNAC	1 cut(s)	499
MalI	GATC	2 cut(s)	167, 179
MboI	GATC	2 cut(s)	165, 177
MboII	GAAGA	6 cut(s)	145, 358, 367, 412, 502, 544
MflI	RGATCY	1 cut(s)	177
MhlI	GDGCHC	2 cut(s)	189, 297
MluCI	AATT	1 cut(s)	39
MlyI	GAGTC	1 cut(s)	527
MmeI	TCCRAC	1 cut(s)	557
MroNI	GCCGGC	1 cut(s)	253
MseI	TTAA	3 cut(s)	405, 414, 621
MspI	CCGG	6 cut(s)	128, 149, 183, 254, 275, 298
MspR9I	CCNGG	3 cut(s)	184, 276, 299
MvnI	CGCG	3 cut(s)	125, 170, 323
MwoI	GCNNNNNNNGC	4 cut(s)	193, 312, 315, 335
NaeI	GCCGGC	1 cut(s)	255
NciI	CCSGG	3 cut(s)	184, 276, 299
NdeII	GATC	2 cut(s)	165, 177
NgoMIV	GCCGGC	1 cut(s)	253
NlaIII	CATG	1 cut(s)	574
NlaIV	GGNNCC	2 cut(s)	296, 477
NmeAIII	GCCGAG	1 cut(s)	140
NmuCI	GTSAC	1 cut(s)	499
PaeR7I	CTCGAG	1 cut(s)	197
PagI	TCATGA	1 cut(s)	570
PcsI	WCGNNNNNNNCGW	2 cut(s)	434, 527
PdiI	GCCGGC	1 cut(s)	255
PfeI	GAWTC	3 cut(s)	15, 285, 380
Ple19I	CGATCG	1 cut(s)	168
PleI	GAGTC	1 cut(s)	526
PpsI	GAGTC	1 cut(s)	526
PpuMI	RGGWCCY	1 cut(s)	220
PshAI	GACNNNNGTC	1 cut(s)	218
Psp5II	RGGWCCY	1 cut(s)	220
PspN4I	GGNNCC	2 cut(s)	296, 477
PspPI	GGNCC	2 cut(s)	208, 220
PspPPI	RGGWCCY	1 cut(s)	220
PspXI	VCTCGAGB	1 cut(s)	197
PsuI	RGATCY	1 cut(s)	177
PvuI	CGATCG	1 cut(s)	168
RgaI	GCGATCGC	1 cut(s)	168
SaqAI	TTAA	3 cut(s)	405, 414, 621
Sau3AI	GATC	2 cut(s)	165, 177
Sau96I	GGNCC	2 cut(s)	208, 220
SchI	GAGTC	1 cut(s)	527
ScrFI	CCNGG	3 cut(s)	184, 276, 299
SduI	GDGCHC	2 cut(s)	189, 297
SetI	ASST	9 cut(s)	142, 159, 204, 213, 222, 378, 423, 431, 481
SfaAI	GCGATCGC	1 cut(s)	168
SfaNI	GCATC	3 cut(s)	240, 261, 379
SfcI	CTRYAG	1 cut(s)	552
Sfr274I	CTCGAG	1 cut(s)	197
SgfI	GCGATCGC	1 cut(s)	168
SinI	GGWCC	2 cut(s)	208, 220
SlaI	CTCGAG	1 cut(s)	197
SmlI	CTYRAG	3 cut(s)	76, 197, 610
SmoI	CTYRAG	3 cut(s)	76, 197, 610
Sse9I	AATT	1 cut(s)	39
SspMI	CTAG	1 cut(s)	605
StyD4I	CCNGG	3 cut(s)	182, 274, 297
TaiI	ACGT	1 cut(s)	431
TaqI	TCGA	4 cut(s)	37, 198, 521, 560
TasI	AATT	1 cut(s)	39
TfiI	GAWTC	3 cut(s)	15, 285, 380
Tru1I	TTAA	3 cut(s)	405, 414, 621
Tru9I	TTAA	3 cut(s)	405, 414, 621
TseFI	GTSAC	1 cut(s)	499
Tsp45I	GTSAC	1 cut(s)	499
TspDTI	ATGAA	2 cut(s)	7, 551
TspGWI	ACGGA	1 cut(s)	230
VpaK11BI	GGWCC	2 cut(s)	208, 220
XagI	CCTNNNNNAGG	1 cut(s)	215
XapI	RAATTY	1 cut(s)	39
XhoI	CTCGAG	1 cut(s)	197
XspI	CTAG	1 cut(s)	605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.