Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0012426

Physical Location & Seq

Genomic Coordinates Reverse (-)

11705625 .. 11707450

Gene Structure 1826 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016968

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAGATATTTACGATTCATTTCCCCACATCTTTCTCAAATTCACAAAACCCTCCCCCAGAACCCTAATCTCCACCCAAGACCCTATCTTTCCTCCCACTTCGCCGCCACTTACACCACCGCCGCGCCGGAGAAGAGACCGGCGCCGCCGGAGAAGGTCTCGGCGATCGCGGACGAGATCTCCGGGCTCACTCTGCTCGAGGTCTCGGACCTGACGGAGGTGCTGAGAGAGAAACTGGGGATAAAGGAGATGCCGGCGATGATGATGATGATGCCGGGGATGGGAATCGGCGGCCTCCGGGGCGGCGGCAAGGGCGGCGGCGCGGCGGCGGGGAAGGCGGAGGAGAAGAAGGAGAAGACGGCGTTTGATGTGAAGCTTGATTCTTTTGATGCGGCGGCGAAGATTAAAGTGATTAAGGAGGTGAGGACGTTTACGGCGTTGGGGTTGAAGGAGGCTAAGGACTTGGTGGAGAAGGCACCTACGCTTTTCGATGGAGTGAGACTCACGAGGTGGAGAGACATAAAGAAGCGCAATGCACTAGCCTCAAGGATTGTTAAAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0031974 GO:0032543 GO:0032991 GO:0034641 GO:0034645 GO:0042645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:0140053 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L12 Ribosomal_L12_N

Protein Analysis

188

Amino Acids

20.52

Weight (kDa)

9.88

Isoelectric Point (pI)

44.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L12_N	PF16320	53 - 95	3.6e-10	Ribosomal protein L7/L12 dimerisation domain
Ribosomal_L12	PF00542	122 - 162	5.9e-15	Ribosomal protein L7/L12 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36420
fragaria_vesca	FvH4_1g12480 FvH4_1g12480
malus_domestica	MD02G1138800.v1.1 MD02G1139200.v1.1 MD15G1252100.v1.1
prunus_persica	Prupe.7G162000_v2.0.a1 Prupe.8G072700_v2.0.a1 Prupe.8G072700_v2.0.a1 Prupe.8G072700_v2.0.a1 Prupe.8G072700_v2.0.a1 Prupe.8G072700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0100351
rosa_laevigata	RLG00000016968
rosa_multiflora	Rmu_sc0004164.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142300
rosa_rugosa	Rorug02G0087800
rosa_samantha	Rh2CG142300
rosa_wichuraiana	Rw2G010720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	142, 475
AccII	CGCG	3 cut(s)	125, 170, 323
AcsI	RAATTY	1 cut(s)	39
AcyI	GRCGYC	1 cut(s)	143
AdeI	CACNNNGTG	1 cut(s)	510
AfiI	CCNNNNNNNGG	2 cut(s)	217, 281
AgsI	TTSAA	1 cut(s)	448
AluBI	AGCT	1 cut(s)	376
AluI	AGCT	1 cut(s)	376
Alw26I	GTCTC	5 cut(s)	130, 163, 208, 493, 510
Ama87I	CYCGRG	1 cut(s)	197
AoxI	GGCC	1 cut(s)	292
ApoI	RAATTY	1 cut(s)	39
AsiSI	GCGATCGC	1 cut(s)	168
AspLEI	GCGC	4 cut(s)	127, 145, 323, 531
AspS9I	GGNCC	1 cut(s)	208
AsuC2I	CCSGG	3 cut(s)	184, 276, 299
AsuHPI	GGTGA	1 cut(s)	433
AvaI	CYCGRG	1 cut(s)	197
AvaII	GGWCC	1 cut(s)	208
BanI	GGYRCC	2 cut(s)	142, 475
BanII	GRGCYC	1 cut(s)	189
BauI	CACGAG	1 cut(s)	505
BbsI	GAAGAC	1 cut(s)	362
BccI	CCATC	2 cut(s)	274, 485
BceAI	ACGGC	2 cut(s)	375, 450
BcnI	CCSGG	3 cut(s)	184, 276, 299
BcoDI	GTCTC	5 cut(s)	130, 163, 208, 493, 510
BfaI	CTAG	1 cut(s)	539
BfoI	RGCGCY	1 cut(s)	146
BglI	GCCNNNNNGGC	1 cut(s)	300
BglII	AGATCT	1 cut(s)	177
Bme1390I	CCNGG	3 cut(s)	184, 276, 299
Bme18I	GGWCC	1 cut(s)	208
BmeT110I	CYCGRG	1 cut(s)	197
BmgT120I	GGNCC	1 cut(s)	208
BmiI	GGNNCC	2 cut(s)	144, 477
BmrFI	CCNGG	3 cut(s)	184, 276, 299
BmrI	ACTGGG	1 cut(s)	245
BmsI	GCATC	3 cut(s)	240, 261, 379
BmuI	ACTGGG	1 cut(s)	245
BpiI	GAAGAC	1 cut(s)	362
BplI	GAGNNNNNCTC	4 cut(s)	143, 175, 486, 518
Bpu10I	CCTNAGC	1 cut(s)	456
BpuEI	CTTGAG	1 cut(s)	529
BpuMI	CCSGG	3 cut(s)	184, 276, 299
BsaBI	GATNNNNATC	1 cut(s)	284
BsaHI	GRCGYC	1 cut(s)	143
BsaI	GGTCTC	3 cut(s)	130, 163, 208
BsaJI	CCNNGG	2 cut(s)	275, 298
BsaXI	ACNNNNNCTCC	2 cut(s)	164, 194
Bsc4I	CCNNNNNNNGG	2 cut(s)	217, 281
Bse118I	RCCGGY	2 cut(s)	139, 253
Bse1I	ACTGG	1 cut(s)	240
Bse3DI	GCAATG	1 cut(s)	538
Bse8I	GATNNNNATC	1 cut(s)	284
BseDI	CCNNGG	2 cut(s)	275, 298
BseGI	GGATG	1 cut(s)	285
BseJI	GATNNNNATC	1 cut(s)	284
BseLI	CCNNNNNNNGG	2 cut(s)	217, 281
BseMI	GCAATG	1 cut(s)	538
BseMII	CTCAG	1 cut(s)	215
BseNI	ACTGG	1 cut(s)	240
BseRI	GAGGAG	1 cut(s)	356
Bsh1236I	CGCG	3 cut(s)	125, 170, 323
Bsh1285I	CGRYCG	1 cut(s)	168
BshFI	GGCC	1 cut(s)	294
BshNI	GGYRCC	2 cut(s)	142, 475
BsiEI	CGRYCG	1 cut(s)	168
BsiHKCI	CYCGRG	1 cut(s)	197
BsiSI	CCGG	7 cut(s)	128, 140, 149, 183, 254, 275, 298
BslI	CCNNNNNNNGG	2 cut(s)	217, 281
BsmAI	GTCTC	5 cut(s)	130, 163, 208, 493, 510
BsnI	GGCC	1 cut(s)	294
Bso31I	GGTCTC	3 cut(s)	130, 163, 208
BsoBI	CYCGRG	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp143I	GATC	2 cut(s)	165, 177
BspANI	GGCC	1 cut(s)	294
BspCNI	CTCAG	1 cut(s)	216
BspFNI	CGCG	3 cut(s)	125, 170, 323
BspLI	GGNNCC	2 cut(s)	144, 477
BspT107I	GGYRCC	2 cut(s)	142, 475
BspTNI	GGTCTC	3 cut(s)	130, 163, 208
BsrDI	GCAATG	1 cut(s)	538
BsrFI	RCCGGY	2 cut(s)	139, 253
BsrI	ACTGG	1 cut(s)	240
BssAI	RCCGGY	2 cut(s)	139, 253
BssECI	CCNNGG	2 cut(s)	275, 298
BssMI	GATC	2 cut(s)	165, 177
BssNI	GRCGYC	1 cut(s)	143
BssSI	CACGAG	1 cut(s)	505
Bst2BI	CACGAG	1 cut(s)	505
Bst6I	CTCTTC	1 cut(s)	128
BstACI	GRCGYC	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	2 cut(s)	224, 456
BstENI	CCTNNNNNAGG	1 cut(s)	215
BstF5I	GGATG	1 cut(s)	285
BstFNI	CGCG	3 cut(s)	125, 170, 323
BstH2I	RGCGCY	1 cut(s)	146
BstHHI	GCGC	4 cut(s)	127, 145, 323, 531
BstKTI	GATC	2 cut(s)	168, 180
BstMAI	GTCTC	5 cut(s)	130, 163, 208, 493, 510
BstMBI	GATC	2 cut(s)	165, 177
BstMCI	CGRYCG	1 cut(s)	168
BstMWI	GCNNNNNNNGC	5 cut(s)	193, 300, 312, 315, 335
BstSCI	CCNGG	3 cut(s)	182, 274, 297
BstUI	CGCG	3 cut(s)	125, 170, 323
BstV2I	GAAGAC	1 cut(s)	362
BstX2I	RGATCY	1 cut(s)	177
BstYI	RGATCY	1 cut(s)	177
BsuRI	GGCC	1 cut(s)	294
BtgZI	GCGATG	1 cut(s)	272
BtsCI	GGATG	1 cut(s)	285
Cac8I	GCNNGC	1 cut(s)	255
CfoI	GCGC	4 cut(s)	127, 145, 323, 531
Cfr10I	RCCGGY	2 cut(s)	139, 253
Cfr13I	GGNCC	1 cut(s)	208
CviJI	RGCY	5 cut(s)	187, 294, 376, 455, 542
CviKI_1	RGCY	5 cut(s)	187, 294, 376, 455, 542
DdeI	CTNAG	2 cut(s)	224, 456
DinI	GGCGCC	1 cut(s)	144
DpnI	GATC	2 cut(s)	167, 179
DpnII	GATC	2 cut(s)	165, 177
DraIII	CACNNNGTG	1 cut(s)	510
Eam1104I	CTCTTC	1 cut(s)	128
EarI	CTCTTC	1 cut(s)	128
EciI	GGCGGA	1 cut(s)	353
Eco24I	GRGCYC	1 cut(s)	189
Eco31I	GGTCTC	3 cut(s)	130, 163, 208
Eco47I	GGWCC	1 cut(s)	208
Eco88I	CYCGRG	1 cut(s)	197
EcoNI	CCTNNNNNAGG	1 cut(s)	215
EcoT38I	GRGCYC	1 cut(s)	189
EgeI	GGCGCC	1 cut(s)	144
EheI	GGCGCC	1 cut(s)	144
FaiI	YATR	1 cut(s)	521
FauI	CCCGC	1 cut(s)	322
FokI	GGATG	1 cut(s)	292
FriOI	GRGCYC	1 cut(s)	189
FspBI	CTAG	1 cut(s)	539
GlaI	GCGC	4 cut(s)	126, 144, 322, 530
HaeII	RGCGCY	1 cut(s)	146
HaeIII	GGCC	1 cut(s)	294
HapII	CCGG	7 cut(s)	128, 140, 149, 183, 254, 275, 298
HhaI	GCGC	4 cut(s)	127, 145, 323, 531
Hin1I	GRCGYC	1 cut(s)	143
Hin6I	GCGC	4 cut(s)	125, 143, 321, 529
HinP1I	GCGC	4 cut(s)	125, 143, 321, 529
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	4 cut(s)	15, 285, 380, 501
HpaII	CCGG	7 cut(s)	128, 140, 149, 183, 254, 275, 298
HphI	GGTGA	1 cut(s)	433
Hpy166II	GTNNAC	1 cut(s)	432
Hpy188I	TCNGA	1 cut(s)	208
Hpy188III	TCNNGA	1 cut(s)	505
Hpy8I	GTNNAC	1 cut(s)	432
HpyAV	CCTTC	5 cut(s)	148, 328, 343, 442, 466
HpyCH4IV	ACGT	1 cut(s)	428
HpyCH4V	TGCA	1 cut(s)	536
HpyF10VI	GCNNNNNNNGC	5 cut(s)	193, 300, 312, 315, 335
HpyF3I	CTNAG	2 cut(s)	224, 456
HpySE526I	ACGT	1 cut(s)	428
Hsp92I	GRCGYC	1 cut(s)	143
HspAI	GCGC	4 cut(s)	125, 143, 321, 529
KasI	GGCGCC	1 cut(s)	142
KroI	GCCGGC	1 cut(s)	253
KroNI	GCCGGC	1 cut(s)	255
Kzo9I	GATC	2 cut(s)	165, 177
LweI	GCATC	3 cut(s)	240, 261, 379
MaeI	CTAG	1 cut(s)	539
MaeII	ACGT	1 cut(s)	428
MalI	GATC	2 cut(s)	167, 179
MboI	GATC	2 cut(s)	165, 177
MboII	GAAGA	4 cut(s)	145, 358, 367, 412
MflI	RGATCY	1 cut(s)	177
MhlI	GDGCHC	1 cut(s)	189
MluCI	AATT	1 cut(s)	39
Mly113I	GGCGCC	1 cut(s)	143
MlyI	GAGTC	1 cut(s)	495
MroNI	GCCGGC	1 cut(s)	253
MseI	TTAA	3 cut(s)	405, 414, 555
MspI	CCGG	7 cut(s)	128, 140, 149, 183, 254, 275, 298
MspR9I	CCNGG	3 cut(s)	184, 276, 299
MvnI	CGCG	3 cut(s)	125, 170, 323
MwoI	GCNNNNNNNGC	5 cut(s)	193, 300, 312, 315, 335
NaeI	GCCGGC	1 cut(s)	255
NarI	GGCGCC	1 cut(s)	143
NciI	CCSGG	3 cut(s)	184, 276, 299
NdeII	GATC	2 cut(s)	165, 177
NgoMIV	GCCGGC	1 cut(s)	253
NlaIV	GGNNCC	2 cut(s)	144, 477
NmeAIII	GCCGAG	1 cut(s)	140
PaeR7I	CTCGAG	1 cut(s)	197
PcsI	WCGNNNNNNNCGW	1 cut(s)	434
PdiI	GCCGGC	1 cut(s)	255
PfeI	GAWTC	3 cut(s)	15, 285, 380
Ple19I	CGATCG	1 cut(s)	168
PleI	GAGTC	1 cut(s)	495
PluTI	GGCGCC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	495
PspN4I	GGNNCC	2 cut(s)	144, 477
PspPI	GGNCC	1 cut(s)	208
PspXI	VCTCGAGB	1 cut(s)	197
PsuI	RGATCY	1 cut(s)	177
PvuI	CGATCG	1 cut(s)	168
RgaI	GCGATCGC	1 cut(s)	168
SaqAI	TTAA	3 cut(s)	405, 414, 555
Sau3AI	GATC	2 cut(s)	165, 177
Sau96I	GGNCC	1 cut(s)	208
SchI	GAGTC	1 cut(s)	495
ScrFI	CCNGG	3 cut(s)	184, 276, 299
SduI	GDGCHC	1 cut(s)	189
SetI	ASST	9 cut(s)	159, 204, 213, 222, 378, 423, 431, 481, 512
SfaAI	GCGATCGC	1 cut(s)	168
SfaNI	GCATC	3 cut(s)	240, 261, 379
SfoI	GGCGCC	1 cut(s)	144
Sfr274I	CTCGAG	1 cut(s)	197
SgfI	GCGATCGC	1 cut(s)	168
SinI	GGWCC	1 cut(s)	208
SlaI	CTCGAG	1 cut(s)	197
SmlI	CTYRAG	2 cut(s)	197, 544
SmoI	CTYRAG	2 cut(s)	197, 544
Sse9I	AATT	1 cut(s)	39
SspDI	GGCGCC	1 cut(s)	142
SspMI	CTAG	1 cut(s)	539
StyD4I	CCNGG	3 cut(s)	182, 274, 297
TaiI	ACGT	1 cut(s)	431
TaqI	TCGA	2 cut(s)	198, 489
TasI	AATT	1 cut(s)	39
TfiI	GAWTC	3 cut(s)	15, 285, 380
Tru1I	TTAA	3 cut(s)	405, 414, 555
Tru9I	TTAA	3 cut(s)	405, 414, 555
TspDTI	ATGAA	1 cut(s)	7
TspGWI	ACGGA	1 cut(s)	230
VpaK11BI	GGWCC	1 cut(s)	208
XagI	CCTNNNNNAGG	1 cut(s)	215
XapI	RAATTY	1 cut(s)	39
XhoI	CTCGAG	1 cut(s)	197
XspI	CTAG	1 cut(s)	539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.