Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0012426

Physical Location & Seq

Genomic Coordinates Reverse (-)

21310660 .. 21313742

Gene Structure 3083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1252100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGAGATATTTACGATTCATTTCCCCACGTTTTTCCCGCATTCAAAAAACCCTAAACCCCCAAAATCCTAATCCCATTTCATCTCTCCAATCGAAGCCCCAGATTTTCTCTCATGTACTGTGCAATTACACCACCGCTGCACCGGAACAAAGGCCGCCGCCGTCTGGGGCGGTATCGGCGATCGCGGACGAGATCTCGGGCCTCACCTTGCTCGAAGTCTCGGACCTCACGGAGGTTCTGAGGGAGAAATTGGGCGTGAAGGAGATGCCGGCGATGGTGATGATGATGCCCGGGATGGGATTCGGCGGGTTGAGAGGGGCCGGCAAGGGCGGAGCGGCGGCGGCCAAAAGCGAGGAGAAGGCCGAAAAGTTGGTGTTTGATGTAAAGCTCGATTCCTTCGATGCTGCGGCAAAGATCAAGGTGATTAAGGAGGTGAGGACGTTTACGGATTTGGGTCTGAAGGAGGCCAAGGACTTGGTGGAGAAGGCACCTACGCTGTTGAAGAAGGGGGTTACGAAGGAGGAGGCCGAATCGATTGTTGCCAAGATGAAGGAAGTTGGTGCCAAAGTTTCTATGGAGAGGAGAGAAGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0031974 GO:0032543 GO:0032991 GO:0034641 GO:0034645 GO:0042645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:0140053 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L12 Ribosomal_L12_N

Protein Analysis

198

Amino Acids

21.4

Weight (kDa)

9.36

Isoelectric Point (pI)

39.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L12_N	PF16320	60 - 106	4.2e-10	Ribosomal protein L7/L12 dimerisation domain
Ribosomal_L12	PF00542	126 - 192	7.4e-25	Ribosomal protein L7/L12 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36420
fragaria_vesca	FvH4_1g12480 FvH4_1g12480
malus_domestica	MD02G1138800.v1.1 MD02G1139200.v1.1 MD15G1252100.v1.1
prunus_persica	Prupe.7G162000_v2.0.a1 Prupe.8G072700_v2.0.a1 Prupe.8G072700_v2.0.a1 Prupe.8G072700_v2.0.a1 Prupe.8G072700_v2.0.a1 Prupe.8G072700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0100351
rosa_laevigata	RLG00000016968
rosa_multiflora	Rmu_sc0004164.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142300
rosa_rugosa	Rorug02G0087800
rosa_samantha	Rh2CG142300
rosa_wichuraiana	Rw2G010720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	487, 560
AccBSI	CCGCTC	1 cut(s)	335
AccII	CGCG	1 cut(s)	185
AcoI	YGGCCR	1 cut(s)	342
AcuI	CTGAAG	1 cut(s)	479
AfaI	GTAC	1 cut(s)	117
AfiI	CCNNNNNNNGG	3 cut(s)	164, 232, 296
AgsI	TTSAA	2 cut(s)	44, 502
AluBI	AGCT	1 cut(s)	388
AluI	AGCT	1 cut(s)	388
Alw26I	GTCTC	1 cut(s)	223
Ama87I	CYCGRG	2 cut(s)	196, 290
AoxI	GGCC	7 cut(s)	152, 199, 318, 342, 360, 465, 525
ApeKI	GCWGC	2 cut(s)	137, 404
AsiSI	GCGATCGC	1 cut(s)	183
AspS9I	GGNCC	3 cut(s)	199, 223, 318
AsuC2I	CCSGG	2 cut(s)	291, 292
AsuHPI	GGTGA	4 cut(s)	196, 289, 433, 445
AvaI	CYCGRG	2 cut(s)	196, 290
AvaII	GGWCC	1 cut(s)	223
BanI	GGYRCC	2 cut(s)	487, 560
BbvI	GCAGC	2 cut(s)	124, 391
BccI	CCATC	2 cut(s)	268, 289
BceAI	ACGGC	1 cut(s)	145
BcnI	CCSGG	2 cut(s)	291, 292
BcoDI	GTCTC	1 cut(s)	223
BglII	AGATCT	1 cut(s)	192
BisI	GCNGC	8 cut(s)	138, 155, 158, 336, 339, 342, 405, 408
BlsI	GCNGC	8 cut(s)	139, 156, 159, 337, 340, 343, 406, 409
Bme1390I	CCNGG	2 cut(s)	291, 292
Bme18I	GGWCC	1 cut(s)	223
BmeT110I	CYCGRG	2 cut(s)	196, 290
BmgT120I	GGNCC	3 cut(s)	199, 223, 318
BmiI	GGNNCC	3 cut(s)	319, 489, 562
BmrFI	CCNGG	2 cut(s)	291, 292
BmsI	GCATC	3 cut(s)	255, 276, 391
BpuMI	CCSGG	2 cut(s)	291, 292
Bsa29I	ATCGAT	1 cut(s)	533
BsaJI	CCNNGG	2 cut(s)	290, 468
BsaWI	WCCGGW	1 cut(s)	142
Bsc4I	CCNNNNNNNGG	3 cut(s)	164, 232, 296
Bse118I	RCCGGY	2 cut(s)	268, 320
BseCI	ATCGAT	1 cut(s)	533
BseDI	CCNNGG	2 cut(s)	290, 468
BseGI	GGATG	1 cut(s)	300
BseLI	CCNNNNNNNGG	3 cut(s)	164, 232, 296
BseMII	CTCAG	1 cut(s)	230
BseRI	GAGGAG	2 cut(s)	368, 536
BseXI	GCAGC	2 cut(s)	124, 391
BsgI	GTGCAG	1 cut(s)	123
Bsh1236I	CGCG	1 cut(s)	185
Bsh1285I	CGRYCG	1 cut(s)	183
BshFI	GGCC	7 cut(s)	154, 201, 320, 344, 362, 467, 527
BshNI	GGYRCC	2 cut(s)	487, 560
BshVI	ATCGAT	1 cut(s)	533
BsiEI	CGRYCG	1 cut(s)	183
BsiHKCI	CYCGRG	2 cut(s)	196, 290
BsiSI	CCGG	4 cut(s)	143, 269, 291, 321
BslI	CCNNNNNNNGG	3 cut(s)	164, 232, 296
BsmAI	GTCTC	1 cut(s)	223
BsmI	GAATGC	1 cut(s)	39
BsnI	GGCC	7 cut(s)	154, 201, 320, 344, 362, 467, 527
BsoBI	CYCGRG	2 cut(s)	196, 290
Bsp143I	GATC	3 cut(s)	180, 192, 414
BspANI	GGCC	7 cut(s)	154, 201, 320, 344, 362, 467, 527
BspCNI	CTCAG	1 cut(s)	231
BspDI	ATCGAT	1 cut(s)	533
BspFNI	CGCG	1 cut(s)	185
BspLI	GGNNCC	3 cut(s)	319, 489, 562
BspT107I	GGYRCC	2 cut(s)	487, 560
BsrBI	CCGCTC	1 cut(s)	335
BsrFI	RCCGGY	2 cut(s)	268, 320
BssAI	RCCGGY	2 cut(s)	268, 320
BssECI	CCNNGG	2 cut(s)	290, 468
BssMI	GATC	3 cut(s)	180, 192, 414
BssT1I	CCWWGG	1 cut(s)	468
Bst4CI	ACNGT	1 cut(s)	120
BstC8I	GCNNGC	2 cut(s)	270, 322
BstDEI	CTNAG	1 cut(s)	239
BstENI	CCTNNNNNAGG	1 cut(s)	230
BstF5I	GGATG	1 cut(s)	300
BstFNI	CGCG	1 cut(s)	185
BstKTI	GATC	3 cut(s)	183, 195, 417
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	3 cut(s)	180, 192, 414
BstMCI	CGRYCG	1 cut(s)	183
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 341
BstSCI	CCNGG	2 cut(s)	289, 290
BstUI	CGCG	1 cut(s)	185
BstV1I	GCAGC	2 cut(s)	124, 391
BstX2I	RGATCY	1 cut(s)	192
BstXI	CCANNNNNNTGG	1 cut(s)	475
BstYI	RGATCY	1 cut(s)	192
Bsu15I	ATCGAT	1 cut(s)	533
BsuRI	GGCC	7 cut(s)	154, 201, 320, 344, 362, 467, 527
BsuTUI	ATCGAT	1 cut(s)	533
BtgZI	GCGATG	1 cut(s)	287
BtsCI	GGATG	1 cut(s)	300
Cac8I	GCNNGC	2 cut(s)	270, 322
Cfr10I	RCCGGY	2 cut(s)	268, 320
Cfr13I	GGNCC	3 cut(s)	199, 223, 318
Cfr9I	CCCGGG	1 cut(s)	290
ClaI	ATCGAT	1 cut(s)	533
Csp6I	GTAC	1 cut(s)	116
CviAII	CATG	1 cut(s)	113
CviJI	RGCY	9 cut(s)	97, 154, 201, 320, 344, 362, 388, 467, 527
CviKI_1	RGCY	9 cut(s)	97, 154, 201, 320, 344, 362, 388, 467, 527
CviQI	GTAC	1 cut(s)	116
DdeI	CTNAG	1 cut(s)	239
DpnI	GATC	3 cut(s)	182, 194, 416
DpnII	GATC	3 cut(s)	180, 192, 414
EaeI	YGGCCR	1 cut(s)	342
EciI	GGCGGA	1 cut(s)	345
Eco130I	CCWWGG	1 cut(s)	468
Eco47I	GGWCC	1 cut(s)	223
Eco57I	CTGAAG	1 cut(s)	479
Eco88I	CYCGRG	2 cut(s)	196, 290
EcoNI	CCTNNNNNAGG	1 cut(s)	230
EcoT14I	CCWWGG	1 cut(s)	468
ErhI	CCWWGG	1 cut(s)	468
FaeI	CATG	1 cut(s)	116
FaiI	YATR	2 cut(s)	114, 575
FatI	CATG	1 cut(s)	112
FauI	CCCGC	2 cut(s)	44, 299
Fnu4HI	GCNGC	8 cut(s)	138, 155, 158, 336, 339, 342, 405, 408
FokI	GGATG	1 cut(s)	307
Fsp4HI	GCNGC	8 cut(s)	138, 155, 158, 336, 339, 342, 405, 408
GluI	GCNGC	8 cut(s)	138, 155, 158, 336, 339, 342, 405, 408
HaeIII	GGCC	7 cut(s)	154, 201, 320, 344, 362, 467, 527
HapII	CCGG	4 cut(s)	143, 269, 291, 321
Hin1II	CATG	1 cut(s)	116
HinfI	GANTC	4 cut(s)	15, 300, 392, 530
HpaII	CCGG	4 cut(s)	143, 269, 291, 321
HphI	GGTGA	4 cut(s)	196, 289, 433, 445
Hpy166II	GTNNAC	1 cut(s)	444
Hpy188I	TCNGA	3 cut(s)	223, 240, 459
Hpy8I	GTNNAC	1 cut(s)	444
HpyAV	CCTTC	8 cut(s)	253, 352, 406, 454, 478, 499, 511, 544
HpyCH4III	ACNGT	1 cut(s)	120
HpyCH4IV	ACGT	2 cut(s)	28, 440
HpyCH4V	TGCA	2 cut(s)	123, 140
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 341
HpyF3I	CTNAG	1 cut(s)	239
HpySE526I	ACGT	2 cut(s)	28, 440
Hsp92II	CATG	1 cut(s)	116
KroI	GCCGGC	2 cut(s)	268, 320
KroNI	GCCGGC	2 cut(s)	270, 322
Kzo9I	GATC	3 cut(s)	180, 192, 414
LmnI	GCTCC	1 cut(s)	332
LpnPI	CCDG	6 cut(s)	113, 150, 156, 282, 304, 334
Lsp1109I	GCAGC	2 cut(s)	124, 391
LweI	GCATC	3 cut(s)	255, 276, 391
MaeII	ACGT	2 cut(s)	28, 440
MaeIII	GTNAC	1 cut(s)	511
MalI	GATC	3 cut(s)	182, 194, 416
MbiI	CCGCTC	1 cut(s)	335
MboI	GATC	3 cut(s)	180, 192, 414
MboII	GAAGA	1 cut(s)	514
MflI	RGATCY	1 cut(s)	192
MluCI	AATT	2 cut(s)	124, 248
MroNI	GCCGGC	2 cut(s)	268, 320
MseI	TTAA	1 cut(s)	426
MspA1I	CMGCKG	1 cut(s)	137
MspI	CCGG	4 cut(s)	143, 269, 291, 321
MspR9I	CCNGG	2 cut(s)	291, 292
Mva1269I	GAATGC	1 cut(s)	39
MvnI	CGCG	1 cut(s)	185
MwoI	GCNNNNNNNGC	2 cut(s)	176, 341
NaeI	GCCGGC	2 cut(s)	270, 322
NciI	CCSGG	2 cut(s)	291, 292
NdeII	GATC	3 cut(s)	180, 192, 414
NgoMIV	GCCGGC	2 cut(s)	268, 320
NlaIII	CATG	1 cut(s)	116
NlaIV	GGNNCC	3 cut(s)	319, 489, 562
PcsI	WCGNNNNNNNCGW	1 cut(s)	396
PctI	GAATGC	1 cut(s)	39
PdiI	GCCGGC	2 cut(s)	270, 322
PfeI	GAWTC	4 cut(s)	15, 300, 392, 530
PkrI	GCNGC	8 cut(s)	139, 156, 159, 337, 340, 343, 406, 409
Ple19I	CGATCG	1 cut(s)	183
PspN4I	GGNNCC	3 cut(s)	319, 489, 562
PspPI	GGNCC	3 cut(s)	199, 223, 318
PsuI	RGATCY	1 cut(s)	192
PvuI	CGATCG	1 cut(s)	183
RgaI	GCGATCGC	1 cut(s)	183
RsaI	GTAC	1 cut(s)	117
RsaNI	GTAC	1 cut(s)	116
SaqAI	TTAA	1 cut(s)	426
SatI	GCNGC	8 cut(s)	138, 155, 158, 336, 339, 342, 405, 408
Sau3AI	GATC	3 cut(s)	180, 192, 414
Sau96I	GGNCC	3 cut(s)	199, 223, 318
ScrFI	CCNGG	2 cut(s)	291, 292
SetI	ASST	9 cut(s)	31, 209, 228, 237, 390, 423, 435, 443, 493
SfaAI	GCGATCGC	1 cut(s)	183
SfaNI	GCATC	3 cut(s)	255, 276, 391
SgfI	GCGATCGC	1 cut(s)	183
SinI	GGWCC	1 cut(s)	223
SmaI	CCCGGG	1 cut(s)	292
Sse9I	AATT	2 cut(s)	124, 248
StyD4I	CCNGG	2 cut(s)	289, 290
StyI	CCWWGG	1 cut(s)	468
TaaI	ACNGT	1 cut(s)	120
TaiI	ACGT	2 cut(s)	31, 443
TaqI	TCGA	5 cut(s)	92, 213, 390, 399, 533
TasI	AATT	2 cut(s)	124, 248
TatI	WGTACW	1 cut(s)	115
TauI	GCSGC	6 cut(s)	157, 160, 338, 341, 344, 410
TfiI	GAWTC	4 cut(s)	15, 300, 392, 530
Tru1I	TTAA	1 cut(s)	426
Tru9I	TTAA	1 cut(s)	426
TseI	GCWGC	2 cut(s)	137, 404
TspDTI	ATGAA	3 cut(s)	7, 69, 563
TspGWI	ACGGA	2 cut(s)	245, 461
TspMI	CCCGGG	1 cut(s)	290
VpaK11BI	GGWCC	1 cut(s)	223
XagI	CCTNNNNNAGG	1 cut(s)	230
XcmI	CCANNNNNNNNNTGG	2 cut(s)	475, 571
XmaI	CCCGGG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.