MD02G1149000.v1.1

Cytochrome p450

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Reverse (-)
12258357 .. 12263417
5061 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1149000.v1.1.491

Sequence Viewer

Length: 1485 bp
ATGGCTGACTCAGAGATAATTCTCTGTCTTCTTCCATCAATCCTAGCTCTCTTCCTCTTCCTCATTCTCCTCAGAAGGAAACAGCACCAGAAAACCAGACTCAATCTCCCGCCAGGAAACATGGGTTGGCCTTTTCTTGGTGAAACCATTGGCTACTTGAAGCCCTACTCTGCAATCTCCATTGGCAAATTCATGGAGCAGCATATCTCAAGGTATGGGAAAATTTACAAGTCAAATTTATTTGGGGAGTCAACAATTGTGTCAGCAGATGCAGGGCTCAACAGATTCATACTGCAGAATGAAGGGACATTGTTTGAATGCAGCTACCCAAGAAGCATAGGAGGGATTCTTGGGAAATGGTCCATGCTGGTTTTGGTCGGTGACATGCACAGAGACATGAGGATGATTTCTCTCAATTTCTTGAGCCATGCCAGGCTCAGGACCCATCTGATGAGAGAAGTTGAAAAGCACACTCTTCTTGTTATGGGGAGTTGGAAGGAGAACTCTGTTTTTTCAGCTCAGGATGAAGCTAAGAAGTTCACATTTAACTTGATGGCCAAACATATCATGAGCTTGGAACCTGGAAAGCCAGAGACTGAGCAGCTCAAGAAACTGTATGTTACTTTCATGAAAGGTGTGGTTTCTCCTCCTGTGAATTTACCAGGAACAGCTTACAGAAGAGCCTTACAGTCAAGATCAACAATTCTGAAGTTTATAGAGTGCAAAATGAAAGAAAGATTAACGGAGGGAACCGAAAACATTGGGGAAGATGATCTGCTTGGATGGGTTTTGAAGAATTCAAATCTTTCAAAAGAGCAAATCCTTGACTTAATATTGAGCTTGCTCTTTGCTGGCCATGAAACTTCATCAGTCTCCATAGCTTTAGCAATTTACTTTTTACCAAGCTGCCCTAATGCAATTCTGCAATTAAGGGAAGAACACAGTGAAATTGCCAAAGCCAAGAAACTAGCTGGGAAGACAGAGTTGGATTGGGAGGACTACAAGAAAATGGAGTTCACTCAATGTGTTATCAGTGAGACGCTTCGGCTTGGGAATGTGGTGAGATTTTTACACAGAAAGGCTCTGAAGGATGTTCGGTACAAAGGGTATGACATTCCATGTGGGTGGAAAGTGCTTCCGGTGATTGCAGCCGTGCATTTGGATCCTTTACTTTTTGACCACCCTCAACACTTCAATCCATGGAGATGGCAGCAGAATAACAACCACCACCACCGTGGATCATCATCAGCATCATGTTACACGAGCATGACAAGTAACAACTTTATGCCATTTGGGGGAGGACCACGACTTTGCGCCGGTTCAGAACTAGCCAAACTTGAAATGGCCGTTTTCATCCACCACCTTGTCCTCAACTTCCACTGGGACCTAGCCGATCCTTTCGACCAACCTCTTGCTTTCCCTTTTGTCGATTTCCAAAAAGGACTACCAATCACAGCCCACCGCTACCAAACTAATCTCATATAA

Protein Analysis

495

Amino Acids

56.33

Weight (kDa)

9.06

Isoelectric Point (pI)

46.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 37 - 465 1.1e-56 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 110, 1462
AclWI GGATC 4 cut(s) 1157, 1170, 1246, 1388
AcoI YGGCCR 3 cut(s) 555, 853, 1344
AcsI RAATTY 5 cut(s) 188, 222, 235, 655, 796
AcuI CTGAAG 2 cut(s) 728, 1106
AfaI GTAC 1 cut(s) 1100
AfiI CCNNNNNNNGG 3 cut(s) 137, 438, 1295
AgsI TTSAA 8 cut(s) 160, 317, 464, 793, 801, 810, 1195, 1340
AjnI CCWGG 4 cut(s) 112, 431, 580, 661
AjuI GAANNNNNNNTTGG 4 cut(s) 109, 141, 968, 1000
AleI CACNNNNGTG 1 cut(s) 1233
Alw26I GTCTC 4 cut(s) 387, 587, 877, 1031
AlwI GGATC 4 cut(s) 1157, 1170, 1246, 1388
AlwNI CAGNNNCTG 1 cut(s) 596
AoxI GGCC 4 cut(s) 128, 555, 853, 1344
ApeKI GCWGC 6 cut(s) 199, 321, 601, 906, 1148, 1210
ApoI RAATTY 5 cut(s) 188, 222, 235, 655, 796
ArsI GACNNNNNNTTYG 2 cut(s) 1293, 1325
AspLEI GCGC 1 cut(s) 1316
AspS9I GGNCC 4 cut(s) 360, 441, 1301, 1384
AsuHPI GGTGA 4 cut(s) 152, 392, 1072, 1153
AvaII GGWCC 4 cut(s) 360, 441, 1301, 1384
BalI TGGCCA 2 cut(s) 557, 855
BamHI GGATCC 1 cut(s) 1162
BanII GRGCYC 1 cut(s) 279
BauI CACGAG 1 cut(s) 1261
BbsI GAAGAC 2 cut(s) 20, 983
BbvI GCAGC 6 cut(s) 211, 333, 613, 893, 1160, 1222
BccI CCATC 5 cut(s) 43, 453, 547, 777, 1200
BceAI ACGGC 2 cut(s) 1136, 1331
BciT130I CCWGG 4 cut(s) 114, 433, 582, 663
BcoDI GTCTC 4 cut(s) 387, 587, 877, 1031
BfaI CTAG 4 cut(s) 44, 968, 1328, 1388
BfmI CTRYAG 1 cut(s) 293
BisI GCNGC 6 cut(s) 200, 322, 602, 907, 1149, 1211
BlsI GCNGC 6 cut(s) 201, 323, 603, 908, 1150, 1212
Bme1390I CCNGG 4 cut(s) 114, 433, 582, 663
Bme18I GGWCC 4 cut(s) 360, 441, 1301, 1384
BmgT120I GGNCC 4 cut(s) 360, 441, 1301, 1384
BmiI GGNNCC 5 cut(s) 443, 579, 751, 1164, 1385
BmrFI CCNGG 4 cut(s) 114, 433, 582, 663
BmrI ACTGGG 1 cut(s) 1390
BmsI GCATC 2 cut(s) 259, 1259
BmuI ACTGGG 1 cut(s) 1390
BpiI GAAGAC 2 cut(s) 20, 983
Bpu10I CCTNAGC 2 cut(s) 437, 519
BpuEI CTTGAG 3 cut(s) 193, 442, 590
BsaBI GATNNNNATC 1 cut(s) 1243
BsaJI CCNNGG 2 cut(s) 1199, 1234
BsaWI WCCGGW 1 cut(s) 1138
BsaXI ACNNNNNCTCC 2 cut(s) 90, 120
Bsc4I CCNNNNNNNGG 3 cut(s) 137, 438, 1295
Bse118I RCCGGY 1 cut(s) 1316
Bse1I ACTGG 1 cut(s) 1385
Bse8I GATNNNNATC 1 cut(s) 1243
BseBI CCWGG 4 cut(s) 114, 433, 582, 663
BseDI CCNNGG 2 cut(s) 1199, 1234
BseGI GGATG 5 cut(s) 408, 529, 788, 1096, 1353
BseJI GATNNNNATC 1 cut(s) 1243
BseLI CCNNNNNNNGG 3 cut(s) 137, 438, 1295
BseMII CTCAG 5 cut(s) 24, 85, 451, 533, 588
BseNI ACTGG 1 cut(s) 1385
BseRI GAGGAG 2 cut(s) 59, 636
BseXI GCAGC 6 cut(s) 211, 333, 613, 893, 1160, 1222
BseYI CCCAGC 1 cut(s) 971
BshFI GGCC 4 cut(s) 130, 557, 855, 1346
BsiSI CCGG 2 cut(s) 1139, 1317
BslFI GGGAC 2 cut(s) 319, 1397
BslI CCNNNNNNNGG 3 cut(s) 137, 438, 1295
BsmAI GTCTC 4 cut(s) 387, 587, 877, 1031
BsmBI CGTCTC 1 cut(s) 1031
BsmFI GGGAC 2 cut(s) 319, 1397
BsmI GAATGC 1 cut(s) 323
BsnI GGCC 4 cut(s) 130, 557, 855, 1346
Bsp1286I GDGCHC 1 cut(s) 279
Bsp143I GATC 5 cut(s) 695, 772, 1162, 1238, 1393
Bsp19I CCATGG 1 cut(s) 1199
BspACI CCGC 2 cut(s) 110, 1462
BspANI GGCC 4 cut(s) 130, 557, 855, 1346
BspCNI CTCAG 5 cut(s) 23, 84, 450, 532, 589
BspHI TCATGA 2 cut(s) 567, 627
BspLI GGNNCC 5 cut(s) 443, 579, 751, 1164, 1385
BspMAI CTGCAG 1 cut(s) 297
BspPI GGATC 4 cut(s) 1157, 1170, 1246, 1388
BspQI GCTCTTC 1 cut(s) 673
BsrFI RCCGGY 1 cut(s) 1316
BsrI ACTGG 1 cut(s) 1385
BssAI RCCGGY 1 cut(s) 1316
BssECI CCNNGG 2 cut(s) 1199, 1234
BssMI GATC 5 cut(s) 695, 772, 1162, 1238, 1393
BssSI CACGAG 1 cut(s) 1261
BssT1I CCWWGG 1 cut(s) 1199
Bst2BI CACGAG 1 cut(s) 1261
Bst2UI CCWGG 4 cut(s) 114, 433, 582, 663
Bst4CI ACNGT 4 cut(s) 615, 690, 944, 1235
Bst6I CTCTTC 4 cut(s) 56, 62, 480, 673
BstC8I GCNNGC 2 cut(s) 842, 853
BstDEI CTNAG 6 cut(s) 10, 71, 437, 519, 531, 597
BstDSI CCRYGG 2 cut(s) 1199, 1234
BstF5I GGATG 5 cut(s) 408, 529, 788, 1096, 1353
BstHHI GCGC 1 cut(s) 1316
BstKTI GATC 5 cut(s) 698, 775, 1165, 1241, 1396
BstMAI GTCTC 4 cut(s) 387, 587, 877, 1031
BstMBI GATC 5 cut(s) 695, 772, 1162, 1238, 1393
BstNI CCWGG 4 cut(s) 114, 433, 582, 663
BstNSI RCATGY 1 cut(s) 388
BstSCI CCNGG 4 cut(s) 112, 431, 580, 661
BstSFI CTRYAG 1 cut(s) 293
BstV1I GCAGC 6 cut(s) 211, 333, 613, 893, 1160, 1222
BstV2I GAAGAC 2 cut(s) 20, 983
BstX2I RGATCY 1 cut(s) 1162
BstXI CCANNNNNNTGG 3 cut(s) 1125, 1206, 1235
BstYI RGATCY 1 cut(s) 1162
BsuRI GGCC 4 cut(s) 130, 557, 855, 1346
BtgI CCRYGG 2 cut(s) 1199, 1234
BtsCI GGATG 5 cut(s) 408, 529, 788, 1096, 1353
BtsIMutI CAGTG 3 cut(s) 949, 1039, 1378
Cac8I GCNNGC 2 cut(s) 842, 853
CaiI CAGNNNCTG 1 cut(s) 596
CciI TCATGA 2 cut(s) 567, 627
CfoI GCGC 1 cut(s) 1316
Cfr10I RCCGGY 1 cut(s) 1316
Cfr13I GGNCC 4 cut(s) 360, 441, 1301, 1384
CseI GACGC 1 cut(s) 1048
Csp6I GTAC 1 cut(s) 1099
CviQI GTAC 1 cut(s) 1099
DdeI CTNAG 6 cut(s) 10, 71, 437, 519, 531, 597
DpnI GATC 5 cut(s) 697, 774, 1164, 1240, 1395
DpnII GATC 5 cut(s) 695, 772, 1162, 1238, 1393
EaeI YGGCCR 3 cut(s) 555, 853, 1344
Eam1104I CTCTTC 4 cut(s) 56, 62, 480, 673
EarI CTCTTC 4 cut(s) 56, 62, 480, 673
Eco130I CCWWGG 1 cut(s) 1199
Eco24I GRGCYC 1 cut(s) 279
Eco47I GGWCC 4 cut(s) 360, 441, 1301, 1384
Eco57I CTGAAG 2 cut(s) 728, 1106
EcoO109I RGGNCCY 2 cut(s) 441, 1384
EcoRI GAATTC 1 cut(s) 796
EcoRII CCWGG 4 cut(s) 112, 431, 580, 661
EcoT14I CCWWGG 1 cut(s) 1199
EcoT38I GRGCYC 1 cut(s) 279
ErhI CCWWGG 1 cut(s) 1199
Esp3I CGTCTC 1 cut(s) 1031
FaqI GGGAC 2 cut(s) 319, 1397
FauI CCCGC 1 cut(s) 117
Fnu4HI GCNGC 6 cut(s) 200, 322, 602, 907, 1149, 1211
FokI GGATG 5 cut(s) 415, 536, 795, 1103, 1340
FriOI GRGCYC 1 cut(s) 279
Fsp4HI GCNGC 6 cut(s) 200, 322, 602, 907, 1149, 1211
FspBI CTAG 4 cut(s) 44, 968, 1328, 1388
GlaI GCGC 1 cut(s) 1315
GluI GCNGC 6 cut(s) 200, 322, 602, 907, 1149, 1211
GsaI CCCAGC 1 cut(s) 975
HaeIII GGCC 4 cut(s) 130, 557, 855, 1346
HapII CCGG 2 cut(s) 1139, 1317
HgaI GACGC 1 cut(s) 1048
HhaI GCGC 1 cut(s) 1316
Hin6I GCGC 1 cut(s) 1314
HinP1I GCGC 1 cut(s) 1314
HincII GTYRAC 1 cut(s) 252
HindII GTYRAC 1 cut(s) 252
HinfI GANTC 5 cut(s) 8, 99, 248, 285, 346
HpaII CCGG 2 cut(s) 1139, 1317
HphI GGTGA 4 cut(s) 152, 392, 1072, 1153
Hpy166II GTNNAC 3 cut(s) 252, 540, 1017
Hpy188I TCNGA 6 cut(s) 13, 74, 450, 708, 1086, 1324
Hpy188III TCNNGA 7 cut(s) 421, 439, 521, 568, 607, 628, 693
Hpy8I GTNNAC 3 cut(s) 252, 540, 1017
HpyAV CCTTC 4 cut(s) 69, 296, 490, 1081
HpyCH4III ACNGT 4 cut(s) 615, 690, 944, 1235
HpyF3I CTNAG 6 cut(s) 10, 71, 437, 519, 531, 597
HspAI GCGC 1 cut(s) 1314
Kzo9I GATC 5 cut(s) 695, 772, 1162, 1238, 1393
LguI GCTCTTC 1 cut(s) 673
LmnI GCTCC 1 cut(s) 196
Lsp1109I GCAGC 6 cut(s) 211, 333, 613, 893, 1160, 1222
LweI GCATC 2 cut(s) 259, 1259
MaeI CTAG 4 cut(s) 44, 968, 1328, 1388
MaeIII GTNAC 4 cut(s) 380, 619, 1256, 1274
MalI GATC 5 cut(s) 697, 774, 1164, 1240, 1395
MboI GATC 5 cut(s) 695, 772, 1162, 1238, 1393
MfeI CAATTG 1 cut(s) 255
MflI RGATCY 1 cut(s) 1162
MhlI GDGCHC 1 cut(s) 279
MlsI TGGCCA 2 cut(s) 557, 855
MluNI TGGCCA 2 cut(s) 557, 855
MlyI GAGTC 3 cut(s) 2, 93, 257
MmeI TCCRAC 2 cut(s) 473, 966
Mox20I TGGCCA 2 cut(s) 557, 855
MscI TGGCCA 2 cut(s) 557, 855
MseI TTAA 4 cut(s) 546, 740, 830, 929
MslI CAYNNNNRTG 5 cut(s) 401, 1123, 1204, 1233, 1265
Msp20I TGGCCA 2 cut(s) 557, 855
MspI CCGG 2 cut(s) 1139, 1317
MspR9I CCNGG 4 cut(s) 114, 433, 582, 663
MunI CAATTG 1 cut(s) 255
Mva1269I GAATGC 1 cut(s) 323
MvaI CCWGG 4 cut(s) 114, 433, 582, 663
NcoI CCATGG 1 cut(s) 1199
NdeII GATC 5 cut(s) 695, 772, 1162, 1238, 1393
NlaIV GGNNCC 5 cut(s) 443, 579, 751, 1164, 1385
NmuCI GTSAC 1 cut(s) 380
NspI RCATGY 1 cut(s) 388
OliI CACNNNNGTG 1 cut(s) 1233
PagI TCATGA 2 cut(s) 567, 627
PciSI GCTCTTC 1 cut(s) 673
PctI GAATGC 1 cut(s) 323
PfeI GAWTC 2 cut(s) 285, 346
PkrI GCNGC 6 cut(s) 201, 323, 603, 908, 1150, 1212
PleI GAGTC 3 cut(s) 2, 93, 256
PpsI GAGTC 3 cut(s) 2, 93, 256
PpuMI RGGWCCY 2 cut(s) 441, 1384
Psp5II RGGWCCY 2 cut(s) 441, 1384
Psp6I CCWGG 4 cut(s) 112, 431, 580, 661
PspFI CCCAGC 1 cut(s) 971
PspGI CCWGG 4 cut(s) 112, 431, 580, 661
PspN4I GGNNCC 5 cut(s) 443, 579, 751, 1164, 1385
PspPI GGNCC 4 cut(s) 360, 441, 1301, 1384
PspPPI RGGWCCY 2 cut(s) 441, 1384
PstI CTGCAG 1 cut(s) 297
PstNI CAGNNNCTG 1 cut(s) 596
PsuI RGATCY 1 cut(s) 1162
RsaI GTAC 1 cut(s) 1100
RsaNI GTAC 1 cut(s) 1099
RseI CAYNNNNRTG 5 cut(s) 401, 1123, 1204, 1233, 1265
SapI GCTCTTC 1 cut(s) 673
SaqAI TTAA 4 cut(s) 546, 740, 830, 929
SatI GCNGC 6 cut(s) 200, 322, 602, 907, 1149, 1211
Sau3AI GATC 5 cut(s) 695, 772, 1162, 1238, 1393
Sau96I GGNCC 4 cut(s) 360, 441, 1301, 1384
SchI GAGTC 3 cut(s) 2, 93, 257
ScrFI CCNGG 4 cut(s) 114, 433, 582, 663
SduI GDGCHC 1 cut(s) 279
SfaNI GCATC 2 cut(s) 259, 1259
SfcI CTRYAG 1 cut(s) 293
SinI GGWCC 4 cut(s) 360, 441, 1301, 1384
SmiMI CAYNNNNRTG 5 cut(s) 401, 1123, 1204, 1233, 1265
SmlI CTYRAG 3 cut(s) 208, 421, 605
SmoI CTYRAG 3 cut(s) 208, 421, 605
SsiI CCGC 2 cut(s) 110, 1462
SspI AATATT 1 cut(s) 834
SspMI CTAG 4 cut(s) 44, 968, 1328, 1388
StyD4I CCNGG 4 cut(s) 112, 431, 580, 661
StyI CCWWGG 1 cut(s) 1199
TaaI ACNGT 4 cut(s) 615, 690, 944, 1235
TaqI TCGA 2 cut(s) 1401, 1428
TfiI GAWTC 2 cut(s) 285, 346
Tru1I TTAA 4 cut(s) 546, 740, 830, 929
Tru9I TTAA 4 cut(s) 546, 740, 830, 929
TscAI CASTG 3 cut(s) 949, 1039, 1385
TseFI GTSAC 1 cut(s) 380
TseI GCWGC 6 cut(s) 199, 321, 601, 906, 1148, 1210
Tsp45I GTSAC 1 cut(s) 380
TspGWI ACGGA 1 cut(s) 758
TspRI CASTG 3 cut(s) 949, 1039, 1385
VpaK11BI GGWCC 4 cut(s) 360, 441, 1301, 1384
XapI RAATTY 5 cut(s) 188, 222, 235, 655, 796
XceI RCATGY 1 cut(s) 388
XcmI CCANNNNNNNNNTGG 3 cut(s) 370, 1232, 1339
XspI CTAG 4 cut(s) 44, 968, 1328, 1388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.