Rmu_co8518083.1_g000001

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8518083.1
Physical Location & Seq
Forward (+)
1 .. 4835
4835 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8518083.1_g000001.1.cds

Sequence Viewer

Length: 1264 bp
gtatgggaaaatttacaagtccagtttgtttggggagccaactatagtttcagctgatgcagggctcaatagattcatactacaaaatgaaggcagattgtttgaatgtagctacccaagaagcataggagggattcttggaaaatggtctatgttggttttagtgggtgacatgcatagagatatgaggactatatccctcaatttcttaagccatgccagactcagaacccatttgctgagagaagttgagaagcatactttgcttgttttggggagctggaaagagaattctgtgttttcagctcaggatgaagctaagaagttcactttcaatttgatggccaaacacatcatgagcttggatcctggagaaccagagacagagcagctcaagaaattgtatgttactttcatgaagggtgtggtttctgctccattaaatttaccagggacagcttacagaaaagccttacagtctcgatcaaccattctgaagttcattgagcgcaaaatggaagagagggtgaagaagggaagtgaaaacataggggaagatgatcttcttggatgggttttgaagaattcaaatctttcagaggagcaaattcttgacttgatactgagcttgctctttgctggtcatgaaacttcatcagtctccatagctttagccatctacttcttgcctggctgtcctaatgcaattgagcagttaagggaagagcacattggaattgtcaaagccaagaagaaagcaggagagacagagttgaactgggatgactacaaaaaaatggaattcactcaatgtgtaataagtgagacacttaggctcgggaacgtggtgaggtttttacacagaaaggcactgaaagatgtaaggtacaaaggttatgacattccatgtgggtggaaagtgcttccggtaattgcagcaatgcatttggatcctttgctttttgactaccctcaacacttcaatccatggagatggcagcaaagcaacagcacgcgatcttcttcatcatcaacatcttactcgagcatgacaagtagcaactttatgccatttgggggagggccacgactttgcgccggatcagaactggccaagttagaaatggccgttttcatccaccacctggtcctcaactaccagtgggagttggccgatttggacgaccaagctttcgcattcccatttgtcgactttcagaaaggactacaaatcagagctcaacgccaaacaaacttcatataa

Protein Analysis

420

Amino Acids

47.81

Weight (kDa)

8.76

Isoelectric Point (pI)

47.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1145
AccI GTMKAC 1 cut(s) 1210
AccII CGCG 1 cut(s) 1016
AclWI GGATC 5 cut(s) 360, 373, 945, 958, 1109
AcoI YGGCCR 4 cut(s) 343, 1111, 1126, 1171
AcsI RAATTY 6 cut(s) 10, 290, 443, 584, 607, 801
AcuI CTGAAG 1 cut(s) 516
AfaI GTAC 1 cut(s) 888
AfiI CCNNNNNNNGG 2 cut(s) 1077, 1145
AflII CTTAAG 1 cut(s) 209
AgsI TTSAA 6 cut(s) 105, 335, 581, 589, 776, 983
AjnI CCWGG 4 cut(s) 368, 449, 689, 1144
AjuI GAANNNNNNNTTGG 4 cut(s) 32, 64, 715, 747
Alw21I GWGCWC 2 cut(s) 730, 1241
Alw26I GTCTC 5 cut(s) 375, 484, 665, 759, 819
AlwI GGATC 5 cut(s) 360, 373, 945, 958, 1109
Ama87I CYCGRG 2 cut(s) 837, 1043
AoxI GGCC 5 cut(s) 343, 1083, 1111, 1126, 1171
ApeKI GCWGC 3 cut(s) 389, 936, 998
ApoI RAATTY 6 cut(s) 10, 290, 443, 584, 607, 801
ArsI GACNNNNNNTTYG 2 cut(s) 1176, 1208
AspLEI GCGC 2 cut(s) 511, 1098
AspS9I GGNCC 2 cut(s) 1083, 1148
AsuHPI GGTGA 3 cut(s) 180, 539, 860
AvaI CYCGRG 2 cut(s) 837, 1043
AvaII GGWCC 1 cut(s) 1148
BaeI ACNNNNGTAYC 2 cut(s) 878, 911
BalI TGGCCA 2 cut(s) 345, 1113
BamHI GGATCC 2 cut(s) 365, 950
BanII GRGCYC 2 cut(s) 67, 1241
Bbv12I GWGCWC 2 cut(s) 730, 1241
BbvI GCAGC 3 cut(s) 401, 948, 1010
BccI CCATC 4 cut(s) 335, 565, 684, 988
BceAI ACGGC 1 cut(s) 1113
BciT130I CCWGG 4 cut(s) 370, 451, 691, 1146
BcoDI GTCTC 5 cut(s) 375, 484, 665, 759, 819
BfmI CTRYAG 1 cut(s) 43
BfrI CTTAAG 1 cut(s) 209
BisI GCNGC 3 cut(s) 390, 937, 999
BlsI GCNGC 3 cut(s) 391, 938, 1000
Bme1390I CCNGG 4 cut(s) 370, 451, 691, 1146
Bme18I GGWCC 1 cut(s) 1148
BmeT110I CYCGRG 2 cut(s) 837, 1043
BmgT120I GGNCC 2 cut(s) 1083, 1148
BmiI GGNNCC 3 cut(s) 37, 367, 952
BmrFI CCNGG 4 cut(s) 370, 451, 691, 1146
BmrI ACTGGG 1 cut(s) 788
BmsI GCATC 1 cut(s) 47
BmuI ACTGGG 1 cut(s) 788
BpmI CTGGAG 1 cut(s) 391
Bpu10I CCTNAGC 1 cut(s) 307
BpuEI CTTGAG 1 cut(s) 378
BsaJI CCNNGG 2 cut(s) 450, 987
BsaWI WCCGGW 1 cut(s) 926
Bsc4I CCNNNNNNNGG 2 cut(s) 1077, 1145
Bse1I ACTGG 4 cut(s) 22, 783, 1114, 1160
Bse3DI GCAATG 1 cut(s) 946
BseBI CCWGG 4 cut(s) 370, 451, 691, 1146
BseDI CCNNGG 2 cut(s) 450, 987
BseGI GGATG 4 cut(s) 317, 576, 788, 1135
BseLI CCNNNNNNNGG 2 cut(s) 1077, 1145
BseMI GCAATG 1 cut(s) 946
BseMII CTCAG 4 cut(s) 231, 239, 321, 615
BseNI ACTGG 4 cut(s) 22, 783, 1114, 1160
BseRI GAGGAG 1 cut(s) 615
BseXI GCAGC 3 cut(s) 401, 948, 1010
Bsh1236I CGCG 1 cut(s) 1016
BshFI GGCC 5 cut(s) 345, 1085, 1113, 1128, 1173
BsiHKAI GWGCWC 2 cut(s) 730, 1241
BsiHKCI CYCGRG 2 cut(s) 837, 1043
BsiSI CCGG 2 cut(s) 927, 1099
BslFI GGGAC 1 cut(s) 467
BslI CCNNNNNNNGG 2 cut(s) 1077, 1145
BsmAI GTCTC 5 cut(s) 375, 484, 665, 759, 819
BsmFI GGGAC 1 cut(s) 467
BsmI GAATGC 1 cut(s) 1197
BsnI GGCC 5 cut(s) 345, 1085, 1113, 1128, 1173
BsoBI CYCGRG 2 cut(s) 837, 1043
Bsp1286I GDGCHC 3 cut(s) 67, 730, 1241
Bsp143I GATC 6 cut(s) 365, 483, 560, 950, 1017, 1101
Bsp19I CCATGG 1 cut(s) 987
BspANI GGCC 5 cut(s) 345, 1085, 1113, 1128, 1173
BspCNI CTCAG 4 cut(s) 232, 238, 320, 616
BspFNI CGCG 1 cut(s) 1016
BspHI TCATGA 3 cut(s) 355, 415, 644
BspLI GGNNCC 3 cut(s) 37, 367, 952
BspPI GGATC 5 cut(s) 360, 373, 945, 958, 1109
BspQI GCTCTTC 1 cut(s) 718
BspTI CTTAAG 1 cut(s) 209
BsrDI GCAATG 1 cut(s) 946
BsrI ACTGG 4 cut(s) 22, 783, 1114, 1160
BssECI CCNNGG 2 cut(s) 450, 987
BssMI GATC 6 cut(s) 365, 483, 560, 950, 1017, 1101
BssT1I CCWWGG 1 cut(s) 987
Bst2UI CCWGG 4 cut(s) 370, 451, 691, 1146
Bst4CI ACNGT 1 cut(s) 478
Bst6I CTCTTC 2 cut(s) 514, 718
BstAFI CTTAAG 1 cut(s) 209
BstAPI GCANNNNNTGC 1 cut(s) 263
BstC8I GCNNGC 2 cut(s) 630, 1014
BstDEI CTNAG 6 cut(s) 225, 240, 307, 319, 624, 831
BstDSI CCRYGG 1 cut(s) 987
BstF5I GGATG 4 cut(s) 317, 576, 788, 1135
BstFNI CGCG 1 cut(s) 1016
BstHHI GCGC 2 cut(s) 511, 1098
BstKTI GATC 6 cut(s) 368, 486, 563, 953, 1020, 1104
BstMAI GTCTC 5 cut(s) 375, 484, 665, 759, 819
BstMBI GATC 6 cut(s) 365, 483, 560, 950, 1017, 1101
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstNI CCWGG 4 cut(s) 370, 451, 691, 1146
BstNSI RCATGY 1 cut(s) 176
BstSCI CCNGG 4 cut(s) 368, 449, 689, 1144
BstSFI CTRYAG 1 cut(s) 43
BstUI CGCG 1 cut(s) 1016
BstV1I GCAGC 3 cut(s) 401, 948, 1010
BstX2I RGATCY 2 cut(s) 365, 950
BstXI CCANNNNNNTGG 2 cut(s) 913, 994
BstYI RGATCY 2 cut(s) 365, 950
BsuRI GGCC 5 cut(s) 345, 1085, 1113, 1128, 1173
BtgI CCRYGG 1 cut(s) 987
BtsCI GGATG 4 cut(s) 317, 576, 788, 1135
BtsIMutI CAGTG 2 cut(s) 870, 1167
Cac8I GCNNGC 2 cut(s) 630, 1014
CciI TCATGA 3 cut(s) 355, 415, 644
CfoI GCGC 2 cut(s) 511, 1098
Cfr13I GGNCC 2 cut(s) 1083, 1148
CsiI ACCWGGT 1 cut(s) 1144
Csp6I GTAC 1 cut(s) 887
CviAII CATG 8 cut(s) 173, 216, 356, 416, 645, 907, 988, 1049
CviQI GTAC 1 cut(s) 887
DdeI CTNAG 6 cut(s) 225, 240, 307, 319, 624, 831
DpnI GATC 6 cut(s) 367, 485, 562, 952, 1019, 1103
DpnII GATC 6 cut(s) 365, 483, 560, 950, 1017, 1101
EaeI YGGCCR 4 cut(s) 343, 1111, 1126, 1171
Eam1104I CTCTTC 2 cut(s) 514, 718
EarI CTCTTC 2 cut(s) 514, 718
Ecl136II GAGCTC 1 cut(s) 1239
Eco130I CCWWGG 1 cut(s) 987
Eco24I GRGCYC 2 cut(s) 67, 1241
Eco47I GGWCC 1 cut(s) 1148
Eco53kI GAGCTC 1 cut(s) 1239
Eco57I CTGAAG 1 cut(s) 516
Eco88I CYCGRG 2 cut(s) 837, 1043
EcoICRI GAGCTC 1 cut(s) 1239
EcoRI GAATTC 3 cut(s) 290, 584, 801
EcoRII CCWGG 4 cut(s) 368, 449, 689, 1144
EcoT14I CCWWGG 1 cut(s) 987
EcoT22I ATGCAT 2 cut(s) 178, 946
EcoT38I GRGCYC 2 cut(s) 67, 1241
ErhI CCWWGG 1 cut(s) 987
FaeI CATG 8 cut(s) 176, 219, 359, 419, 648, 910, 991, 1052
FalI AAGNNNNNCTT 2 cut(s) 547, 579
FaqI GGGAC 1 cut(s) 467
FatI CATG 8 cut(s) 172, 215, 355, 415, 644, 906, 987, 1048
FblI GTMKAC 1 cut(s) 1210
Fnu4HI GCNGC 3 cut(s) 390, 937, 999
FokI GGATG 4 cut(s) 324, 583, 795, 1122
FriOI GRGCYC 2 cut(s) 67, 1241
Fsp4HI GCNGC 3 cut(s) 390, 937, 999
GlaI GCGC 2 cut(s) 510, 1097
GluI GCNGC 3 cut(s) 390, 937, 999
GsuI CTGGAG 1 cut(s) 391
HaeIII GGCC 5 cut(s) 345, 1085, 1113, 1128, 1173
HapII CCGG 2 cut(s) 927, 1099
HhaI GCGC 2 cut(s) 511, 1098
Hin1II CATG 8 cut(s) 176, 219, 359, 419, 648, 910, 991, 1052
Hin6I GCGC 2 cut(s) 509, 1096
HinP1I GCGC 2 cut(s) 509, 1096
HincII GTYRAC 1 cut(s) 1211
HindII GTYRAC 1 cut(s) 1211
HindIII AAGCTT 1 cut(s) 1189
HinfI GANTC 3 cut(s) 73, 134, 223
HpaII CCGG 2 cut(s) 927, 1099
HphI GGTGA 3 cut(s) 180, 539, 860
Hpy166II GTNNAC 2 cut(s) 328, 1211
Hpy188I TCNGA 6 cut(s) 228, 496, 599, 1106, 1219, 1236
Hpy188III TCNNGA 8 cut(s) 309, 356, 395, 416, 481, 612, 645, 839
Hpy8I GTNNAC 2 cut(s) 328, 1211
HpyAV CCTTC 3 cut(s) 84, 413, 527
HpyCH4III ACNGT 1 cut(s) 478
HpyCH4IV ACGT 1 cut(s) 844
HpyCH4V TGCA 5 cut(s) 60, 176, 705, 936, 944
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
HpyF3I CTNAG 6 cut(s) 225, 240, 307, 319, 624, 831
HpySE526I ACGT 1 cut(s) 844
Hsp92II CATG 8 cut(s) 176, 219, 359, 419, 648, 910, 991, 1052
HspAI GCGC 2 cut(s) 509, 1096
Kzo9I GATC 6 cut(s) 365, 483, 560, 950, 1017, 1101
LguI GCTCTTC 1 cut(s) 718
LmnI GCTCC 4 cut(s) 35, 277, 440, 602
Lsp1109I GCAGC 3 cut(s) 401, 948, 1010
LweI GCATC 1 cut(s) 47
MabI ACCWGGT 1 cut(s) 1144
MaeII ACGT 1 cut(s) 844
MaeIII GTNAC 2 cut(s) 168, 407
MalI GATC 6 cut(s) 367, 485, 562, 952, 1019, 1103
MboI GATC 6 cut(s) 365, 483, 560, 950, 1017, 1101
MboII GAAGA 9 cut(s) 531, 542, 555, 567, 593, 735, 764, 1012, 1015
MfeI CAATTG 1 cut(s) 706
MflI RGATCY 2 cut(s) 365, 950
MhlI GDGCHC 3 cut(s) 67, 730, 1241
MlsI TGGCCA 2 cut(s) 345, 1113
MluNI TGGCCA 2 cut(s) 345, 1113
MlyI GAGTC 1 cut(s) 217
MnlI CCTC 9 cut(s) 123, 181, 210, 517, 593, 844, 982, 1074, 1161
Mox20I TGGCCA 2 cut(s) 345, 1113
Mph1103I ATGCAT 2 cut(s) 178, 946
MscI TGGCCA 2 cut(s) 345, 1113
MseI TTAA 3 cut(s) 210, 441, 717
MslI CAYNNNNRTG 2 cut(s) 911, 992
Msp20I TGGCCA 2 cut(s) 345, 1113
MspA1I CMGCKG 1 cut(s) 54
MspCI CTTAAG 1 cut(s) 209
MspI CCGG 2 cut(s) 927, 1099
MspR9I CCNGG 4 cut(s) 370, 451, 691, 1146
MunI CAATTG 1 cut(s) 706
Mva1269I GAATGC 1 cut(s) 1197
MvaI CCWGG 4 cut(s) 370, 451, 691, 1146
MvnI CGCG 1 cut(s) 1016
MwoI GCNNNNNNNGC 1 cut(s) 263
NcoI CCATGG 1 cut(s) 987
NdeII GATC 6 cut(s) 365, 483, 560, 950, 1017, 1101
NlaIII CATG 8 cut(s) 176, 219, 359, 419, 648, 910, 991, 1052
NlaIV GGNNCC 3 cut(s) 37, 367, 952
NmuCI GTSAC 1 cut(s) 168
NsiI ATGCAT 2 cut(s) 178, 946
NspI RCATGY 1 cut(s) 176
PaeR7I CTCGAG 1 cut(s) 1043
PagI TCATGA 3 cut(s) 355, 415, 644
PciSI GCTCTTC 1 cut(s) 718
PctI GAATGC 1 cut(s) 1197
PfeI GAWTC 2 cut(s) 73, 134
PflMI CCANNNNNTGG 1 cut(s) 1145
PfoI TCCNGGA 1 cut(s) 368
PkrI GCNGC 3 cut(s) 391, 938, 1000
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
Psp124BI GAGCTC 1 cut(s) 1241
Psp6I CCWGG 4 cut(s) 368, 449, 689, 1144
PspGI CCWGG 4 cut(s) 368, 449, 689, 1144
PspN4I GGNNCC 3 cut(s) 37, 367, 952
PspPI GGNCC 2 cut(s) 1083, 1148
PspXI VCTCGAGB 1 cut(s) 1043
PsuI RGATCY 2 cut(s) 365, 950
PvuII CAGCTG 1 cut(s) 54
RsaI GTAC 1 cut(s) 888
RsaNI GTAC 1 cut(s) 887
RseI CAYNNNNRTG 2 cut(s) 911, 992
SacI GAGCTC 1 cut(s) 1241
SalI GTCGAC 1 cut(s) 1209
SapI GCTCTTC 1 cut(s) 718
SaqAI TTAA 3 cut(s) 210, 441, 717
SatI GCNGC 3 cut(s) 390, 937, 999
Sau3AI GATC 6 cut(s) 365, 483, 560, 950, 1017, 1101
Sau96I GGNCC 2 cut(s) 1083, 1148
SchI GAGTC 1 cut(s) 217
ScrFI CCNGG 4 cut(s) 370, 451, 691, 1146
SduI GDGCHC 3 cut(s) 67, 730, 1241
SexAI ACCWGGT 1 cut(s) 1144
SfaNI GCATC 1 cut(s) 47
SfcI CTRYAG 1 cut(s) 43
Sfr274I CTCGAG 1 cut(s) 1043
SinI GGWCC 1 cut(s) 1148
SlaI CTCGAG 1 cut(s) 1043
SmiMI CAYNNNNRTG 2 cut(s) 911, 992
SmlI CTYRAG 3 cut(s) 209, 393, 1043
SmoI CTYRAG 3 cut(s) 209, 393, 1043
SstI GAGCTC 1 cut(s) 1241
StyD4I CCNGG 4 cut(s) 368, 449, 689, 1144
StyI CCWWGG 1 cut(s) 987
TaaI ACNGT 1 cut(s) 478
TaiI ACGT 1 cut(s) 847
TaqI TCGA 3 cut(s) 482, 1044, 1210
TfiI GAWTC 2 cut(s) 73, 134
Tru1I TTAA 3 cut(s) 210, 441, 717
Tru9I TTAA 3 cut(s) 210, 441, 717
TscAI CASTG 2 cut(s) 877, 1167
TseFI GTSAC 1 cut(s) 168
TseI GCWGC 3 cut(s) 389, 936, 998
Tsp45I GTSAC 1 cut(s) 168
TspRI CASTG 2 cut(s) 877, 1167
Van91I CCANNNNNTGG 1 cut(s) 1145
Vha464I CTTAAG 1 cut(s) 209
VpaK11BI GGWCC 1 cut(s) 1148
XapI RAATTY 6 cut(s) 10, 290, 443, 584, 607, 801
XceI RCATGY 1 cut(s) 176
XcmI CCANNNNNNNNNTGG 1 cut(s) 1121
XhoI CTCGAG 1 cut(s) 1043
XmiI GTMKAC 1 cut(s) 1210
Zsp2I ATGCAT 2 cut(s) 178, 946
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.