Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0007751

Physical Location & Seq

Genomic Coordinates Reverse (-)

13249017 .. 13255523

Gene Structure 6507 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG154900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGCCAGCCTCCATGTCTGACTCAGAGCTAATCCTCTGTGTTCTTCCCTCAATCTTAACTCTATTCCTCTTCCTCATTCTCATCAGAAGAAAGAAGCAGCAACACCAAATCAGAGGACTCAATCTCCCACCAGGAAACATGGGCTGGCCTTTTCTTGGAGAAACCATAGGCTACTTGAAGCCTTACTGTGCAACCTCTACAGGAGAATTCATGGAGCAACATATTTCAAGGTATGGGAAAATTTACAAGTCCAGTTTGTTTGGGGAGCCAACTATAGTTTCAGCTGATGCAGGGCTCAATAGATTCATACTACAAAATGAAGGCAGATTGTTTGAATGTAGCTACCCAAGAAGCATAGGAGGGATTCTTGGAAAATGGTCTATGTTGGTTTTAGTGGGTGACATGCATAGAGATATGAGGACTATATCCCTCAATTTCTTAAGCCATGCCAGACTCAGAACCCACTTGCTGAGAGAAGTTGAGAAGCATACTTTGCTTGTTTTGGGGAGCTGGAAAGAGAATTATGTGTTTTCAGCTCAGGATGAAGCTAAGAAGTTCACTTTCAATTTGATGGCCAAACACATCATGAGCTTGGATCCTGGAGAACCAGAGACAGAGCAGCTCAAGAAATTGTATGTTACTTTCATGAAGGGTGTGGTTTCTGCTCCATTAAATTTACCAGGGACAGCTTACAGAAAAGCCTTACAGTCTCGATCAACCATTCTGAAGTTCATTGAGCGCAAAATGGAAGAGAGGGTGAAGAAGGGAAGTGAAAACATAGGGGAAGATGATCTTCTTGGATGGGTTTTGAAGAATTCAAATCTTTCAAAGGAGCAAATTCTTGACTTGATACTGAGCTTGCTCTTTGCTGGTCATGAAACTTCATCAGTCTCCATAGCTTTAGCCATCTACTTCTTGCCTGGCTGTCCTAATGCAATTGAGCAGTTAAGGGAAGAGCACATTGAAATTGTCAAAGCCAAGAAGAAAGCAGGAGAGACAGAGTTGAACTGGGATGACTACAAAAAAATGGAATTCACTCAATGTGTAATAAGTGAGACACTTAGGCTCGGGAACGTGGTGAGGTTTTTACACAGAAAGGCACTGAAAGATGTAAGGTACAAAGGTTATGACATTCCATGTGGGTGGAAAGTGCTTCCGGTAATTGCAGCCATGCATTTGGATCCTTTGCTTTTTGACTACCCTCAACACTTCAATCCATGGAGATGGCAGGTCAGTCATACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006629 GO:0006694 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008395 GO:0008610 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009753 GO:0009755 GO:0009826 GO:0009867 GO:0009965 GO:0009987 GO:0010012 GO:0010016 GO:0010033 GO:0010268 GO:0010358 GO:0010817 GO:0012505 GO:0014070 GO:0016043 GO:0016049 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048532 GO:0048589 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055088 GO:0055114 GO:0060560 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0071840 GO:0080132 GO:0099402 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

414

Amino Acids

47.42

Weight (kDa)

9.08

Isoelectric Point (pI)

49.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	43 - 410	2.3e-41	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50660 AT3G50660
fragaria_vesca	FvH4_1g13420 FvH4_1g13420 FvH4_1g13420 FvH4_1g13420 FvH4_1g13420
malus_domestica	MD02G1149000.v1.1 MD15G1263900.v1.1
prunus_persica	Prupe.7G153500_v2.0.a1 Prupe.7G153500_v2.0.a1 Prupe.7G153500_v2.0.a1
pyrus_communis	pycom02g11740 pycom15g22980
rosa_chinensis	RchiOBHm_Chr2g0101791
rosa_laevigata	RLG00000017101
rosa_multiflora	Rmu_co8518083.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141030
rosa_rugosa	Rorug02G0101900
rosa_samantha	Rh2AG149300 Rh2BG154900 Rh2CG155200 Rh2DG155100
rosa_wichuraiana	Rw2G011680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1219
AclWI	GGATC	4 cut(s)	590, 603, 1175, 1188
AcoI	YGGCCR	1 cut(s)	573
AcsI	RAATTY	6 cut(s)	206, 240, 673, 814, 837, 1031
AcuI	CTGAAG	1 cut(s)	746
AfaI	GTAC	1 cut(s)	1118
AfiI	CCNNNNNNNGG	1 cut(s)	155
AflII	CTTAAG	1 cut(s)	439
AjnI	CCWGG	4 cut(s)	130, 598, 679, 919
AjuI	GAANNNNNNNTTGG	2 cut(s)	262, 294
Alw21I	GWGCWC	1 cut(s)	960
Alw26I	GTCTC	5 cut(s)	605, 714, 895, 989, 1049
AlwI	GGATC	4 cut(s)	590, 603, 1175, 1188
Ama87I	CYCGRG	1 cut(s)	1067
AoxI	GGCC	2 cut(s)	146, 573
ApeKI	GCWGC	3 cut(s)	97, 619, 1166
ApoI	RAATTY	6 cut(s)	206, 240, 673, 814, 837, 1031
AspLEI	GCGC	1 cut(s)	741
AsuHPI	GGTGA	3 cut(s)	410, 769, 1090
AvaI	CYCGRG	1 cut(s)	1067
BaeI	ACNNNNGTAYC	2 cut(s)	1108, 1141
BalI	TGGCCA	1 cut(s)	575
BamHI	GGATCC	2 cut(s)	595, 1180
BanII	GRGCYC	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	960
BbvI	GCAGC	3 cut(s)	109, 631, 1178
BccI	CCATC	4 cut(s)	565, 795, 914, 1218
BciT130I	CCWGG	4 cut(s)	132, 600, 681, 921
BcoDI	GTCTC	5 cut(s)	605, 714, 895, 989, 1049
BfaI	CTAG	1 cut(s)	1243
BfmI	CTRYAG	2 cut(s)	198, 273
BfrI	CTTAAG	1 cut(s)	439
BfuAI	ACCTGC	1 cut(s)	1219
BisI	GCNGC	3 cut(s)	98, 620, 1167
BlsI	GCNGC	3 cut(s)	99, 621, 1168
Bme1390I	CCNGG	4 cut(s)	132, 600, 681, 921
BmeT110I	CYCGRG	1 cut(s)	1067
BmiI	GGNNCC	3 cut(s)	267, 597, 1182
BmrFI	CCNGG	4 cut(s)	132, 600, 681, 921
BmrI	ACTGGG	1 cut(s)	1018
BmsI	GCATC	1 cut(s)	277
BmuI	ACTGGG	1 cut(s)	1018
BpmI	CTGGAG	1 cut(s)	621
Bpu10I	CCTNAGC	1 cut(s)	537
BpuEI	CTTGAG	1 cut(s)	608
BsaJI	CCNNGG	2 cut(s)	680, 1217
BsaWI	WCCGGW	1 cut(s)	1156
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse1I	ACTGG	2 cut(s)	252, 1013
BseBI	CCWGG	4 cut(s)	132, 600, 681, 921
BseDI	CCNNGG	2 cut(s)	680, 1217
BseGI	GGATG	3 cut(s)	547, 806, 1018
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMII	CTCAG	5 cut(s)	36, 461, 469, 551, 845
BseNI	ACTGG	2 cut(s)	252, 1013
BseXI	GCAGC	3 cut(s)	109, 631, 1178
BshFI	GGCC	2 cut(s)	148, 575
BsiHKAI	GWGCWC	1 cut(s)	960
BsiHKCI	CYCGRG	1 cut(s)	1067
BsiSI	CCGG	1 cut(s)	1157
BslFI	GGGAC	1 cut(s)	697
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmAI	GTCTC	5 cut(s)	605, 714, 895, 989, 1049
BsmFI	GGGAC	1 cut(s)	697
BsnI	GGCC	2 cut(s)	148, 575
BsoBI	CYCGRG	1 cut(s)	1067
Bsp1286I	GDGCHC	2 cut(s)	297, 960
Bsp143I	GATC	4 cut(s)	595, 713, 790, 1180
Bsp19I	CCATGG	1 cut(s)	1217
BspANI	GGCC	2 cut(s)	148, 575
BspCNI	CTCAG	5 cut(s)	35, 462, 468, 550, 846
BspHI	TCATGA	3 cut(s)	585, 645, 874
BspLI	GGNNCC	3 cut(s)	267, 597, 1182
BspMI	ACCTGC	1 cut(s)	1219
BspPI	GGATC	4 cut(s)	590, 603, 1175, 1188
BspQI	GCTCTTC	1 cut(s)	948
BspTI	CTTAAG	1 cut(s)	439
BsrI	ACTGG	2 cut(s)	252, 1013
BssECI	CCNNGG	2 cut(s)	680, 1217
BssMI	GATC	4 cut(s)	595, 713, 790, 1180
BssT1I	CCWWGG	1 cut(s)	1217
Bst2UI	CCWGG	4 cut(s)	132, 600, 681, 921
Bst4CI	ACNGT	2 cut(s)	188, 708
Bst6I	CTCTTC	3 cut(s)	74, 744, 948
BstAFI	CTTAAG	1 cut(s)	439
BstAPI	GCANNNNNTGC	1 cut(s)	493
BstC8I	GCNNGC	3 cut(s)	6, 146, 860
BstDEI	CTNAG	7 cut(s)	22, 455, 470, 537, 549, 854, 1061
BstDSI	CCRYGG	1 cut(s)	1217
BstF5I	GGATG	3 cut(s)	547, 806, 1018
BstHHI	GCGC	1 cut(s)	741
BstKTI	GATC	4 cut(s)	598, 716, 793, 1183
BstMAI	GTCTC	5 cut(s)	605, 714, 895, 989, 1049
BstMBI	GATC	4 cut(s)	595, 713, 790, 1180
BstMWI	GCNNNNNNNGC	1 cut(s)	493
BstNI	CCWGG	4 cut(s)	132, 600, 681, 921
BstNSI	RCATGY	1 cut(s)	406
BstSCI	CCNGG	4 cut(s)	130, 598, 679, 919
BstSFI	CTRYAG	2 cut(s)	198, 273
BstV1I	GCAGC	3 cut(s)	109, 631, 1178
BstX2I	RGATCY	2 cut(s)	595, 1180
BstXI	CCANNNNNNTGG	3 cut(s)	1143, 1177, 1224
BstYI	RGATCY	2 cut(s)	595, 1180
BsuRI	GGCC	2 cut(s)	148, 575
BtgI	CCRYGG	1 cut(s)	1217
BtsCI	GGATG	3 cut(s)	547, 806, 1018
BtsIMutI	CAGTG	1 cut(s)	1100
BveI	ACCTGC	1 cut(s)	1219
Cac8I	GCNNGC	3 cut(s)	6, 146, 860
CciI	TCATGA	3 cut(s)	585, 645, 874
CfoI	GCGC	1 cut(s)	741
Csp6I	GTAC	1 cut(s)	1117
CviQI	GTAC	1 cut(s)	1117
DdeI	CTNAG	7 cut(s)	22, 455, 470, 537, 549, 854, 1061
DpnI	GATC	4 cut(s)	597, 715, 792, 1182
DpnII	GATC	4 cut(s)	595, 713, 790, 1180
EaeI	YGGCCR	1 cut(s)	573
Eam1104I	CTCTTC	3 cut(s)	74, 744, 948
EarI	CTCTTC	3 cut(s)	74, 744, 948
Eco130I	CCWWGG	1 cut(s)	1217
Eco24I	GRGCYC	1 cut(s)	297
Eco57I	CTGAAG	1 cut(s)	746
Eco88I	CYCGRG	1 cut(s)	1067
EcoRI	GAATTC	3 cut(s)	206, 814, 1031
EcoRII	CCWGG	4 cut(s)	130, 598, 679, 919
EcoT14I	CCWWGG	1 cut(s)	1217
EcoT22I	ATGCAT	2 cut(s)	408, 1176
EcoT38I	GRGCYC	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	1217
FalI	AAGNNNNNCTT	2 cut(s)	777, 809
FaqI	GGGAC	1 cut(s)	697
Fnu4HI	GCNGC	3 cut(s)	98, 620, 1167
FokI	GGATG	3 cut(s)	554, 813, 1025
FriOI	GRGCYC	1 cut(s)	297
Fsp4HI	GCNGC	3 cut(s)	98, 620, 1167
FspBI	CTAG	1 cut(s)	1243
GlaI	GCGC	1 cut(s)	740
GluI	GCNGC	3 cut(s)	98, 620, 1167
GsuI	CTGGAG	1 cut(s)	621
HaeIII	GGCC	2 cut(s)	148, 575
HapII	CCGG	1 cut(s)	1157
HhaI	GCGC	1 cut(s)	741
Hin6I	GCGC	1 cut(s)	739
HinP1I	GCGC	1 cut(s)	739
HinfI	GANTC	5 cut(s)	20, 117, 303, 364, 453
HpaII	CCGG	1 cut(s)	1157
HphI	GGTGA	3 cut(s)	410, 769, 1090
Hpy166II	GTNNAC	1 cut(s)	558
Hpy188I	TCNGA	6 cut(s)	19, 25, 86, 113, 458, 726
Hpy188III	TCNNGA	8 cut(s)	539, 586, 625, 646, 711, 842, 875, 1069
Hpy8I	GTNNAC	1 cut(s)	558
HpyAV	CCTTC	3 cut(s)	314, 643, 757
HpyCH4III	ACNGT	2 cut(s)	188, 708
HpyCH4IV	ACGT	1 cut(s)	1074
HpyCH4V	TGCA	6 cut(s)	191, 290, 406, 935, 1166, 1174
HpyF10VI	GCNNNNNNNGC	1 cut(s)	493
HpyF3I	CTNAG	7 cut(s)	22, 455, 470, 537, 549, 854, 1061
HpySE526I	ACGT	1 cut(s)	1074
HspAI	GCGC	1 cut(s)	739
Kzo9I	GATC	4 cut(s)	595, 713, 790, 1180
LguI	GCTCTTC	1 cut(s)	948
LmnI	GCTCC	5 cut(s)	214, 265, 507, 670, 832
Lsp1109I	GCAGC	3 cut(s)	109, 631, 1178
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	1 cut(s)	1243
MaeII	ACGT	1 cut(s)	1074
MaeIII	GTNAC	2 cut(s)	398, 637
MalI	GATC	4 cut(s)	597, 715, 792, 1182
MboI	GATC	4 cut(s)	595, 713, 790, 1180
MfeI	CAATTG	1 cut(s)	936
MflI	RGATCY	2 cut(s)	595, 1180
MhlI	GDGCHC	2 cut(s)	297, 960
MlsI	TGGCCA	1 cut(s)	575
MluNI	TGGCCA	1 cut(s)	575
MlyI	GAGTC	3 cut(s)	14, 111, 447
Mox20I	TGGCCA	1 cut(s)	575
Mph1103I	ATGCAT	2 cut(s)	408, 1176
MscI	TGGCCA	1 cut(s)	575
MseI	TTAA	4 cut(s)	56, 440, 671, 947
MslI	CAYNNNNRTG	2 cut(s)	1141, 1222
Msp20I	TGGCCA	1 cut(s)	575
MspA1I	CMGCKG	1 cut(s)	284
MspCI	CTTAAG	1 cut(s)	439
MspI	CCGG	1 cut(s)	1157
MspR9I	CCNGG	4 cut(s)	132, 600, 681, 921
MunI	CAATTG	1 cut(s)	936
MvaI	CCWGG	4 cut(s)	132, 600, 681, 921
MwoI	GCNNNNNNNGC	1 cut(s)	493
NcoI	CCATGG	1 cut(s)	1217
NdeII	GATC	4 cut(s)	595, 713, 790, 1180
NlaIV	GGNNCC	3 cut(s)	267, 597, 1182
NmuCI	GTSAC	1 cut(s)	398
NsiI	ATGCAT	2 cut(s)	408, 1176
NspI	RCATGY	1 cut(s)	406
PagI	TCATGA	3 cut(s)	585, 645, 874
PciSI	GCTCTTC	1 cut(s)	948
PfeI	GAWTC	2 cut(s)	303, 364
PfoI	TCCNGGA	1 cut(s)	598
PkrI	GCNGC	3 cut(s)	99, 621, 1168
PleI	GAGTC	3 cut(s)	14, 111, 447
PpsI	GAGTC	3 cut(s)	14, 111, 447
Psp6I	CCWGG	4 cut(s)	130, 598, 679, 919
PspGI	CCWGG	4 cut(s)	130, 598, 679, 919
PspN4I	GGNNCC	3 cut(s)	267, 597, 1182
PsuI	RGATCY	2 cut(s)	595, 1180
PvuII	CAGCTG	1 cut(s)	284
RsaI	GTAC	1 cut(s)	1118
RsaNI	GTAC	1 cut(s)	1117
RseI	CAYNNNNRTG	2 cut(s)	1141, 1222
SapI	GCTCTTC	1 cut(s)	948
SaqAI	TTAA	4 cut(s)	56, 440, 671, 947
SatI	GCNGC	3 cut(s)	98, 620, 1167
Sau3AI	GATC	4 cut(s)	595, 713, 790, 1180
SchI	GAGTC	3 cut(s)	14, 111, 447
ScrFI	CCNGG	4 cut(s)	132, 600, 681, 921
SduI	GDGCHC	2 cut(s)	297, 960
SfaNI	GCATC	1 cut(s)	277
SfcI	CTRYAG	2 cut(s)	198, 273
SmiMI	CAYNNNNRTG	2 cut(s)	1141, 1222
SmlI	CTYRAG	2 cut(s)	439, 623
SmoI	CTYRAG	2 cut(s)	439, 623
SspMI	CTAG	1 cut(s)	1243
StyD4I	CCNGG	4 cut(s)	130, 598, 679, 919
StyI	CCWWGG	1 cut(s)	1217
TaaI	ACNGT	2 cut(s)	188, 708
TaiI	ACGT	1 cut(s)	1077
TaqI	TCGA	1 cut(s)	712
TfiI	GAWTC	2 cut(s)	303, 364
Tru1I	TTAA	4 cut(s)	56, 440, 671, 947
Tru9I	TTAA	4 cut(s)	56, 440, 671, 947
TscAI	CASTG	1 cut(s)	1107
TseFI	GTSAC	1 cut(s)	398
TseI	GCWGC	3 cut(s)	97, 619, 1166
Tsp45I	GTSAC	1 cut(s)	398
TspDTI	ATGAA	9 cut(s)	199, 295, 333, 558, 634, 662, 721, 873, 891
TspRI	CASTG	1 cut(s)	1107
Vha464I	CTTAAG	1 cut(s)	439
XapI	RAATTY	6 cut(s)	206, 240, 673, 814, 837, 1031
XceI	RCATGY	1 cut(s)	406
XspI	CTAG	1 cut(s)	1243
Zsp2I	ATGCAT	2 cut(s)	408, 1176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.