Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007751

Physical Location & Seq

Genomic Coordinates Reverse (-)

17038934 .. 17040225

Gene Structure 1292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g22980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGTCTGACTCAGAGATTATTCTCTGTCTTCTTCCATCAATTGTAGCTCTCTTCCTCTTCCTCATTCTTCTCAGAAGGAAGCAGAACCATAAAACCAGACTCAATCTCCCGCCAGGAAACATGGGTTGGCCTTTTCTTGGTGAAACCATTGGCTACTTGAAGCCCTACTCTGCAATCACCATTGGCAAATTCATGGAGGAGCATATCTCAAGGTATGGGAAAATTTACAAGTCGAATTTGTTTGGGGAGCCAACAATTGTGTCAGCAGATGCAGGGCTCAACAGATTCATATTGCAGAATGAAGGGAGACTGTTTGAATGTAGCTACCCAAGAAGCATAGGAGGGATTCTTGGGAAATGGTCCATGCTGGTTTTGGTCGGTGACATGCACAGAGACATGAGGATGATATCTCTCAACTTCTTGAGCCATGCCAGACTCAGAACCCATCTGATGAGAGAAGTTGAAAAGCACACTCTTCTTGTTTTGGGGAGTTGGAGGGAAAACTCTGTTTTTTCAGCTCAGGATGAAGCTAAGAAGTTCACGTTCAACTTGATGGCCAAACATATCATGAGCTTGGATCCTGGAAAACCAGAGACTGAGCAGCTGAAGAAATTATATGTTACTTTCATGAAAGGTGTGGTTTCTGCTCCTCTGAATTTACCAGGAACTGCTTACAGAAGAGCCTTACAGTCAAGATCGATCGATTCTGAAGTTTATAGAGTGCAAAATGAAAGAAAGATTGATGGAGGGAACCGAAAACATTGGGGAAGATCGATCTGCTTGGATGGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006629 GO:0006694 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008395 GO:0008610 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009753 GO:0009755 GO:0009826 GO:0009867 GO:0009965 GO:0009987 GO:0010012 GO:0010016 GO:0010033 GO:0010268 GO:0010358 GO:0010817 GO:0012505 GO:0014070 GO:0016043 GO:0016049 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048532 GO:0048589 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055088 GO:0055114 GO:0060560 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0071840 GO:0080132 GO:0099402 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

265

Amino Acids

30.21

Weight (kDa)

9.77

Isoelectric Point (pI)

47.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50660 AT3G50660
fragaria_vesca	FvH4_1g13420 FvH4_1g13420 FvH4_1g13420 FvH4_1g13420 FvH4_1g13420
malus_domestica	MD02G1149000.v1.1 MD15G1263900.v1.1
prunus_persica	Prupe.7G153500_v2.0.a1 Prupe.7G153500_v2.0.a1 Prupe.7G153500_v2.0.a1
pyrus_communis	pycom02g11740 pycom15g22980
rosa_chinensis	RchiOBHm_Chr2g0101791
rosa_laevigata	RLG00000017101
rosa_multiflora	Rmu_co8518083.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141030
rosa_rugosa	Rorug02G0101900
rosa_samantha	Rh2AG149300 Rh2BG154900 Rh2CG155200 Rh2DG155100
rosa_wichuraiana	Rw2G011680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	110
AclWI	GGATC	2 cut(s)	572, 585
AcoI	YGGCCR	1 cut(s)	555
AcsI	RAATTY	4 cut(s)	188, 222, 235, 655
AcuI	CTGAAG	2 cut(s)	626, 729
AfiI	CCNNNNNNNGG	1 cut(s)	137
AgsI	TTSAA	4 cut(s)	160, 317, 464, 547
AjnI	CCWGG	3 cut(s)	112, 580, 661
AjuI	GAANNNNNNNTTGG	2 cut(s)	109, 141
AluBI	AGCT	6 cut(s)	47, 324, 518, 530, 573, 604
AluI	AGCT	6 cut(s)	47, 324, 518, 530, 573, 604
Alw26I	GTCTC	3 cut(s)	301, 387, 587
AlwI	GGATC	2 cut(s)	572, 585
AlwNI	CAGNNNCTG	2 cut(s)	596, 668
AoxI	GGCC	2 cut(s)	128, 555
ApeKI	GCWGC	1 cut(s)	601
ApoI	RAATTY	4 cut(s)	188, 222, 235, 655
AspS9I	GGNCC	1 cut(s)	360
AsuHPI	GGTGA	3 cut(s)	152, 169, 392
AvaII	GGWCC	1 cut(s)	360
BalI	TGGCCA	1 cut(s)	557
BamHI	GGATCC	1 cut(s)	577
BanII	GRGCYC	1 cut(s)	279
BbsI	GAAGAC	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	613
BccI	CCATC	5 cut(s)	43, 453, 547, 737, 779
BciT130I	CCWGG	3 cut(s)	114, 582, 663
BcoDI	GTCTC	3 cut(s)	301, 387, 587
BisI	GCNGC	1 cut(s)	602
BlsI	GCNGC	1 cut(s)	603
Bme1390I	CCNGG	3 cut(s)	114, 582, 663
Bme18I	GGWCC	1 cut(s)	360
BmgT120I	GGNCC	1 cut(s)	360
BmiI	GGNNCC	3 cut(s)	249, 579, 752
BmrFI	CCNGG	3 cut(s)	114, 582, 663
BmsI	GCATC	1 cut(s)	259
BpiI	GAAGAC	1 cut(s)	20
BplI	GAGNNNNNCTC	2 cut(s)	191, 223
Bpu10I	CCTNAGC	1 cut(s)	519
BpuEI	CTTGAG	2 cut(s)	193, 442
Bsa29I	ATCGAT	3 cut(s)	698, 702, 773
BsaXI	ACNNNNNCTCC	2 cut(s)	90, 120
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
BseBI	CCWGG	3 cut(s)	114, 582, 663
BseCI	ATCGAT	3 cut(s)	698, 702, 773
BseGI	GGATG	3 cut(s)	408, 529, 790
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMII	CTCAG	5 cut(s)	24, 85, 451, 533, 588
BseRI	GAGGAG	2 cut(s)	212, 639
BseXI	GCAGC	1 cut(s)	613
Bsh1285I	CGRYCG	1 cut(s)	702
BshFI	GGCC	2 cut(s)	130, 557
BshVI	ATCGAT	3 cut(s)	698, 702, 773
BsiEI	CGRYCG	1 cut(s)	702
BslI	CCNNNNNNNGG	1 cut(s)	137
BsmAI	GTCTC	3 cut(s)	301, 387, 587
BsnI	GGCC	2 cut(s)	130, 557
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp143I	GATC	5 cut(s)	577, 695, 699, 770, 774
BspACI	CCGC	1 cut(s)	110
BspANI	GGCC	2 cut(s)	130, 557
BspCNI	CTCAG	5 cut(s)	23, 84, 450, 532, 589
BspDI	ATCGAT	3 cut(s)	698, 702, 773
BspHI	TCATGA	2 cut(s)	567, 627
BspLI	GGNNCC	3 cut(s)	249, 579, 752
BspPI	GGATC	2 cut(s)	572, 585
BspQI	GCTCTTC	1 cut(s)	673
BssMI	GATC	5 cut(s)	577, 695, 699, 770, 774
Bst2UI	CCWGG	3 cut(s)	114, 582, 663
Bst4CI	ACNGT	2 cut(s)	312, 690
Bst6I	CTCTTC	4 cut(s)	56, 62, 480, 673
BstDEI	CTNAG	6 cut(s)	10, 71, 437, 519, 531, 597
BstF5I	GGATG	3 cut(s)	408, 529, 790
BstKTI	GATC	5 cut(s)	580, 698, 702, 773, 777
BstMAI	GTCTC	3 cut(s)	301, 387, 587
BstMBI	GATC	5 cut(s)	577, 695, 699, 770, 774
BstMCI	CGRYCG	1 cut(s)	702
BstNI	CCWGG	3 cut(s)	114, 582, 663
BstNSI	RCATGY	1 cut(s)	388
BstSCI	CCNGG	3 cut(s)	112, 580, 661
BstV1I	GCAGC	1 cut(s)	613
BstV2I	GAAGAC	1 cut(s)	20
BstX2I	RGATCY	1 cut(s)	577
BstYI	RGATCY	1 cut(s)	577
Bsu15I	ATCGAT	3 cut(s)	698, 702, 773
BsuRI	GGCC	2 cut(s)	130, 557
BsuTUI	ATCGAT	3 cut(s)	698, 702, 773
BtsCI	GGATG	3 cut(s)	408, 529, 790
CaiI	CAGNNNCTG	2 cut(s)	596, 668
CciI	TCATGA	2 cut(s)	567, 627
Cfr13I	GGNCC	1 cut(s)	360
ClaI	ATCGAT	3 cut(s)	698, 702, 773
CviAII	CATG	8 cut(s)	121, 193, 364, 385, 397, 428, 568, 628
DdeI	CTNAG	6 cut(s)	10, 71, 437, 519, 531, 597
DpnI	GATC	5 cut(s)	579, 697, 701, 772, 776
DpnII	GATC	5 cut(s)	577, 695, 699, 770, 774
EaeI	YGGCCR	1 cut(s)	555
Eam1104I	CTCTTC	4 cut(s)	56, 62, 480, 673
EarI	CTCTTC	4 cut(s)	56, 62, 480, 673
Eco24I	GRGCYC	1 cut(s)	279
Eco32I	GATATC	1 cut(s)	408
Eco47I	GGWCC	1 cut(s)	360
Eco57I	CTGAAG	2 cut(s)	626, 729
EcoRII	CCWGG	3 cut(s)	112, 580, 661
EcoRV	GATATC	1 cut(s)	408
EcoT38I	GRGCYC	1 cut(s)	279
FaeI	CATG	8 cut(s)	124, 196, 367, 388, 400, 431, 571, 631
FatI	CATG	8 cut(s)	120, 192, 363, 384, 396, 427, 567, 627
FauI	CCCGC	1 cut(s)	117
Fnu4HI	GCNGC	1 cut(s)	602
FokI	GGATG	2 cut(s)	415, 536
FriOI	GRGCYC	1 cut(s)	279
Fsp4HI	GCNGC	1 cut(s)	602
GluI	GCNGC	1 cut(s)	602
HaeIII	GGCC	2 cut(s)	130, 557
Hin1II	CATG	8 cut(s)	124, 196, 367, 388, 400, 431, 571, 631
HinfI	GANTC	6 cut(s)	8, 99, 285, 346, 435, 704
HphI	GGTGA	3 cut(s)	152, 169, 392
Hpy166II	GTNNAC	1 cut(s)	540
Hpy188I	TCNGA	7 cut(s)	7, 13, 74, 440, 450, 654, 709
Hpy188III	TCNNGA	5 cut(s)	421, 521, 568, 628, 693
Hpy8I	GTNNAC	1 cut(s)	540
HpyAV	CCTTC	2 cut(s)	69, 296
HpyCH4III	ACNGT	2 cut(s)	312, 690
HpyCH4IV	ACGT	1 cut(s)	542
HpyCH4V	TGCA	5 cut(s)	173, 272, 295, 388, 724
HpyF3I	CTNAG	6 cut(s)	10, 71, 437, 519, 531, 597
HpySE526I	ACGT	1 cut(s)	542
Hsp92II	CATG	8 cut(s)	124, 196, 367, 388, 400, 431, 571, 631
Kzo9I	GATC	5 cut(s)	577, 695, 699, 770, 774
LguI	GCTCTTC	1 cut(s)	673
LmnI	GCTCC	3 cut(s)	199, 247, 652
Lsp1109I	GCAGC	1 cut(s)	613
LweI	GCATC	1 cut(s)	259
MaeII	ACGT	1 cut(s)	542
MaeIII	GTNAC	2 cut(s)	380, 619
MalI	GATC	5 cut(s)	579, 697, 701, 772, 776
MboI	GATC	5 cut(s)	577, 695, 699, 770, 774
MboII	GAAGA	9 cut(s)	20, 23, 43, 49, 59, 467, 619, 690, 780
MfeI	CAATTG	2 cut(s)	39, 255
MflI	RGATCY	1 cut(s)	577
MhlI	GDGCHC	1 cut(s)	279
MlsI	TGGCCA	1 cut(s)	557
MluCI	AATT	7 cut(s)	39, 188, 222, 235, 255, 611, 655
MluNI	TGGCCA	1 cut(s)	557
MlyI	GAGTC	3 cut(s)	2, 93, 429
MmeI	TCCRAC	1 cut(s)	473
MnlI	CCTC	8 cut(s)	65, 71, 190, 335, 393, 489, 660, 740
Mox20I	TGGCCA	1 cut(s)	557
MscI	TGGCCA	1 cut(s)	557
MslI	CAYNNNNRTG	1 cut(s)	401
Msp20I	TGGCCA	1 cut(s)	557
MspA1I	CMGCKG	1 cut(s)	604
MspR9I	CCNGG	3 cut(s)	114, 582, 663
MunI	CAATTG	2 cut(s)	39, 255
MvaI	CCWGG	3 cut(s)	114, 582, 663
NdeII	GATC	5 cut(s)	577, 695, 699, 770, 774
NlaIII	CATG	8 cut(s)	124, 196, 367, 388, 400, 431, 571, 631
NlaIV	GGNNCC	3 cut(s)	249, 579, 752
NmuCI	GTSAC	1 cut(s)	380
NspI	RCATGY	1 cut(s)	388
PagI	TCATGA	2 cut(s)	567, 627
PciSI	GCTCTTC	1 cut(s)	673
PfeI	GAWTC	3 cut(s)	285, 346, 704
PfoI	TCCNGGA	1 cut(s)	580
PkrI	GCNGC	1 cut(s)	603
Ple19I	CGATCG	1 cut(s)	702
PleI	GAGTC	3 cut(s)	2, 93, 429
PpsI	GAGTC	3 cut(s)	2, 93, 429
Psp6I	CCWGG	3 cut(s)	112, 580, 661
PspGI	CCWGG	3 cut(s)	112, 580, 661
PspN4I	GGNNCC	3 cut(s)	249, 579, 752
PspPI	GGNCC	1 cut(s)	360
PstNI	CAGNNNCTG	2 cut(s)	596, 668
PsuI	RGATCY	1 cut(s)	577
PvuI	CGATCG	1 cut(s)	702
PvuII	CAGCTG	1 cut(s)	604
RseI	CAYNNNNRTG	1 cut(s)	401
SapI	GCTCTTC	1 cut(s)	673
SatI	GCNGC	1 cut(s)	602
Sau3AI	GATC	5 cut(s)	577, 695, 699, 770, 774
Sau96I	GGNCC	1 cut(s)	360
SchI	GAGTC	3 cut(s)	2, 93, 429
ScrFI	CCNGG	3 cut(s)	114, 582, 663
SduI	GDGCHC	1 cut(s)	279
SetI	ASST	9 cut(s)	49, 215, 326, 520, 532, 545, 575, 606, 637
SfaNI	GCATC	1 cut(s)	259
SinI	GGWCC	1 cut(s)	360
SmiMI	CAYNNNNRTG	1 cut(s)	401
SmlI	CTYRAG	2 cut(s)	208, 421
SmoI	CTYRAG	2 cut(s)	208, 421
Sse9I	AATT	7 cut(s)	39, 188, 222, 235, 255, 611, 655
SsiI	CCGC	1 cut(s)	110
StyD4I	CCNGG	3 cut(s)	112, 580, 661
TaaI	ACNGT	2 cut(s)	312, 690
TaiI	ACGT	1 cut(s)	545
TaqI	TCGA	4 cut(s)	233, 698, 702, 773
TasI	AATT	7 cut(s)	39, 188, 222, 235, 255, 611, 655
TfiI	GAWTC	3 cut(s)	285, 346, 704
TseFI	GTSAC	1 cut(s)	380
TseI	GCWGC	1 cut(s)	601
Tsp45I	GTSAC	1 cut(s)	380
TspDTI	ATGAA	7 cut(s)	181, 277, 315, 540, 616, 644, 744
VpaK11BI	GGWCC	1 cut(s)	360
XapI	RAATTY	4 cut(s)	188, 222, 235, 655
XceI	RCATGY	1 cut(s)	388
XcmI	CCANNNNNNNNNTGG	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.