Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0007751

Physical Location & Seq

Genomic Coordinates Reverse (-)

8297750 .. 8299019

Gene Structure 1270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g11740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCTGACTCAGAGATAATTCTCTGTCTTCTTCCATCAATCCTTGCTCTCTTCCTCTTCCTCATTCTCCTCAGAAGGAAACAGCACCAGAAAACCAGACTCAATCTCCCGCCAGGAAACATGGGTTGGCCTTTTCTTGGTGAAACCATTGGCTACTTGAAGCCCTACTCTGCAATCACCATTGGCAAATTCATGGAGCAGCATATCTCAAGGTATGGGAAAATTTACAAGTCAAATTTATTTGGGGAGTCAACAATTGTGTCAGCAGATGCAGGGCTCAACAGATTCATACTGCAGAATGAAGGGAGATTGTTTGAATGCAGCTACCCAAGAAGCATAGGAGGGATTCTTGGGAAATGGTCCATGCTGGTTTTGGTCGGTGACATGCACAGAGACATGAGGATGATATCTCTCAATTTCTTGAGCCATGCCAGGCTCAGGACCCATCTGATGAGAGAAGTAGAAAAGCACACTCTTCTTGTTTTGGGGAGTTGGAAGGAGAACTCTGTTTTTTCAGCTCAGGATGAAGCTAAGAAGTTCACATTCAACTTGATGGCCAAACATATCATGAGCTTGGAACCTGGAAAGCCAGAGACTGAGCAGCTCAAGAAACTGTATGTTACTTTCATGAAAGGTGTGGTTTCCCCTCCTGTGAATTTACCAGGAACAGCTTACAGAAGAGCCTTACAGTCAAGATCAATCCTCAATTCTGAAGTTTATAGAGTGCAAAATGAAAGAAAGATTAATGGAGGGAACCGAAAACATTGGGGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006629 GO:0006694 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008395 GO:0008610 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009753 GO:0009755 GO:0009826 GO:0009867 GO:0009965 GO:0009987 GO:0010012 GO:0010016 GO:0010033 GO:0010268 GO:0010358 GO:0010817 GO:0012505 GO:0014070 GO:0016043 GO:0016049 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048532 GO:0048589 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055088 GO:0055114 GO:0060560 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0071840 GO:0080132 GO:0099402 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

259

Amino Acids

29.58

Weight (kDa)

10.06

Isoelectric Point (pI)

47.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50660 AT3G50660
fragaria_vesca	FvH4_1g13420 FvH4_1g13420 FvH4_1g13420 FvH4_1g13420 FvH4_1g13420
malus_domestica	MD02G1149000.v1.1 MD15G1263900.v1.1
prunus_persica	Prupe.7G153500_v2.0.a1 Prupe.7G153500_v2.0.a1 Prupe.7G153500_v2.0.a1
pyrus_communis	pycom02g11740 pycom15g22980
rosa_chinensis	RchiOBHm_Chr2g0101791
rosa_laevigata	RLG00000017101
rosa_multiflora	Rmu_co8518083.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141030
rosa_rugosa	Rorug02G0101900
rosa_samantha	Rh2AG149300 Rh2BG154900 Rh2CG155200 Rh2DG155100
rosa_wichuraiana	Rw2G011680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	110
AcoI	YGGCCR	1 cut(s)	555
AcsI	RAATTY	4 cut(s)	188, 222, 235, 655
AcuI	CTGAAG	1 cut(s)	732
AfiI	CCNNNNNNNGG	2 cut(s)	137, 438
AgsI	TTSAA	3 cut(s)	160, 317, 547
AjnI	CCWGG	4 cut(s)	112, 431, 580, 661
AjuI	GAANNNNNNNTTGG	2 cut(s)	109, 141
AluBI	AGCT	6 cut(s)	324, 518, 530, 573, 604, 671
AluI	AGCT	6 cut(s)	324, 518, 530, 573, 604, 671
Alw26I	GTCTC	2 cut(s)	387, 587
AlwNI	CAGNNNCTG	1 cut(s)	596
AoxI	GGCC	2 cut(s)	128, 555
ApeKI	GCWGC	3 cut(s)	199, 321, 601
ApoI	RAATTY	4 cut(s)	188, 222, 235, 655
AseI	ATTAAT	1 cut(s)	744
AspS9I	GGNCC	2 cut(s)	360, 441
AsuHPI	GGTGA	3 cut(s)	152, 169, 392
AvaII	GGWCC	2 cut(s)	360, 441
BalI	TGGCCA	1 cut(s)	557
BanII	GRGCYC	1 cut(s)	279
BbsI	GAAGAC	1 cut(s)	20
BbvI	GCAGC	3 cut(s)	211, 333, 613
BccI	CCATC	3 cut(s)	43, 453, 547
BciT130I	CCWGG	4 cut(s)	114, 433, 582, 663
BcoDI	GTCTC	2 cut(s)	387, 587
BfmI	CTRYAG	1 cut(s)	293
BisI	GCNGC	3 cut(s)	200, 322, 602
BlsI	GCNGC	3 cut(s)	201, 323, 603
Bme1390I	CCNGG	4 cut(s)	114, 433, 582, 663
Bme18I	GGWCC	2 cut(s)	360, 441
BmgT120I	GGNCC	2 cut(s)	360, 441
BmiI	GGNNCC	3 cut(s)	443, 579, 755
BmrFI	CCNGG	4 cut(s)	114, 433, 582, 663
BmsI	GCATC	1 cut(s)	259
BpiI	GAAGAC	1 cut(s)	20
Bpu10I	CCTNAGC	2 cut(s)	437, 519
BpuEI	CTTGAG	3 cut(s)	193, 442, 590
BsaXI	ACNNNNNCTCC	2 cut(s)	90, 120
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 438
BseBI	CCWGG	4 cut(s)	114, 433, 582, 663
BseGI	GGATG	2 cut(s)	408, 529
BseLI	CCNNNNNNNGG	2 cut(s)	137, 438
BseMII	CTCAG	5 cut(s)	24, 85, 451, 533, 588
BseRI	GAGGAG	1 cut(s)	59
BseXI	GCAGC	3 cut(s)	211, 333, 613
BshFI	GGCC	2 cut(s)	130, 557
BslI	CCNNNNNNNGG	2 cut(s)	137, 438
BsmAI	GTCTC	2 cut(s)	387, 587
BsmI	GAATGC	1 cut(s)	323
BsnI	GGCC	2 cut(s)	130, 557
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp143I	GATC	1 cut(s)	695
BspACI	CCGC	1 cut(s)	110
BspANI	GGCC	2 cut(s)	130, 557
BspCNI	CTCAG	5 cut(s)	23, 84, 450, 532, 589
BspHI	TCATGA	2 cut(s)	567, 627
BspLI	GGNNCC	3 cut(s)	443, 579, 755
BspMAI	CTGCAG	1 cut(s)	297
BspQI	GCTCTTC	1 cut(s)	673
BssMI	GATC	1 cut(s)	695
Bst2UI	CCWGG	4 cut(s)	114, 433, 582, 663
Bst4CI	ACNGT	2 cut(s)	615, 690
Bst6I	CTCTTC	4 cut(s)	56, 62, 480, 673
BstDEI	CTNAG	6 cut(s)	10, 71, 437, 519, 531, 597
BstF5I	GGATG	2 cut(s)	408, 529
BstKTI	GATC	1 cut(s)	698
BstMAI	GTCTC	2 cut(s)	387, 587
BstMBI	GATC	1 cut(s)	695
BstNI	CCWGG	4 cut(s)	114, 433, 582, 663
BstNSI	RCATGY	1 cut(s)	388
BstSCI	CCNGG	4 cut(s)	112, 431, 580, 661
BstSFI	CTRYAG	1 cut(s)	293
BstV1I	GCAGC	3 cut(s)	211, 333, 613
BstV2I	GAAGAC	1 cut(s)	20
BsuRI	GGCC	2 cut(s)	130, 557
BtsCI	GGATG	2 cut(s)	408, 529
CaiI	CAGNNNCTG	1 cut(s)	596
CciI	TCATGA	2 cut(s)	567, 627
Cfr13I	GGNCC	2 cut(s)	360, 441
CviAII	CATG	8 cut(s)	121, 193, 364, 385, 397, 428, 568, 628
DdeI	CTNAG	6 cut(s)	10, 71, 437, 519, 531, 597
DpnI	GATC	1 cut(s)	697
DpnII	GATC	1 cut(s)	695
EaeI	YGGCCR	1 cut(s)	555
Eam1104I	CTCTTC	4 cut(s)	56, 62, 480, 673
EarI	CTCTTC	4 cut(s)	56, 62, 480, 673
Eco24I	GRGCYC	1 cut(s)	279
Eco32I	GATATC	1 cut(s)	408
Eco47I	GGWCC	2 cut(s)	360, 441
Eco57I	CTGAAG	1 cut(s)	732
EcoO109I	RGGNCCY	1 cut(s)	441
EcoRII	CCWGG	4 cut(s)	112, 431, 580, 661
EcoRV	GATATC	1 cut(s)	408
EcoT38I	GRGCYC	1 cut(s)	279
FaeI	CATG	8 cut(s)	124, 196, 367, 388, 400, 431, 571, 631
FatI	CATG	8 cut(s)	120, 192, 363, 384, 396, 427, 567, 627
FauI	CCCGC	1 cut(s)	117
Fnu4HI	GCNGC	3 cut(s)	200, 322, 602
FokI	GGATG	2 cut(s)	415, 536
FriOI	GRGCYC	1 cut(s)	279
Fsp4HI	GCNGC	3 cut(s)	200, 322, 602
GluI	GCNGC	3 cut(s)	200, 322, 602
HaeIII	GGCC	2 cut(s)	130, 557
Hin1II	CATG	8 cut(s)	124, 196, 367, 388, 400, 431, 571, 631
HincII	GTYRAC	1 cut(s)	252
HindII	GTYRAC	1 cut(s)	252
HinfI	GANTC	5 cut(s)	8, 99, 248, 285, 346
HphI	GGTGA	3 cut(s)	152, 169, 392
Hpy166II	GTNNAC	2 cut(s)	252, 540
Hpy188I	TCNGA	4 cut(s)	13, 74, 450, 712
Hpy188III	TCNNGA	7 cut(s)	421, 439, 521, 568, 607, 628, 693
Hpy8I	GTNNAC	2 cut(s)	252, 540
HpyAV	CCTTC	3 cut(s)	69, 296, 490
HpyCH4III	ACNGT	2 cut(s)	615, 690
HpyCH4V	TGCA	6 cut(s)	173, 272, 295, 321, 388, 727
HpyF3I	CTNAG	6 cut(s)	10, 71, 437, 519, 531, 597
Hsp92II	CATG	8 cut(s)	124, 196, 367, 388, 400, 431, 571, 631
Kzo9I	GATC	1 cut(s)	695
LguI	GCTCTTC	1 cut(s)	673
LmnI	GCTCC	1 cut(s)	196
Lsp1109I	GCAGC	3 cut(s)	211, 333, 613
LweI	GCATC	1 cut(s)	259
MaeIII	GTNAC	2 cut(s)	380, 619
MalI	GATC	1 cut(s)	697
MboI	GATC	1 cut(s)	695
MboII	GAAGA	6 cut(s)	20, 23, 43, 49, 467, 690
MfeI	CAATTG	1 cut(s)	255
MhlI	GDGCHC	1 cut(s)	279
MlsI	TGGCCA	1 cut(s)	557
MluCI	AATT	8 cut(s)	18, 188, 222, 235, 255, 415, 655, 706
MluNI	TGGCCA	1 cut(s)	557
MlyI	GAGTC	3 cut(s)	2, 93, 257
MmeI	TCCRAC	1 cut(s)	473
MnlI	CCTC	8 cut(s)	65, 71, 80, 335, 393, 657, 713, 743
Mox20I	TGGCCA	1 cut(s)	557
MscI	TGGCCA	1 cut(s)	557
MseI	TTAA	1 cut(s)	744
MslI	CAYNNNNRTG	1 cut(s)	401
Msp20I	TGGCCA	1 cut(s)	557
MspR9I	CCNGG	4 cut(s)	114, 433, 582, 663
MunI	CAATTG	1 cut(s)	255
Mva1269I	GAATGC	1 cut(s)	323
MvaI	CCWGG	4 cut(s)	114, 433, 582, 663
NdeII	GATC	1 cut(s)	695
NlaIII	CATG	8 cut(s)	124, 196, 367, 388, 400, 431, 571, 631
NlaIV	GGNNCC	3 cut(s)	443, 579, 755
NmuCI	GTSAC	1 cut(s)	380
NspI	RCATGY	1 cut(s)	388
PagI	TCATGA	2 cut(s)	567, 627
PciSI	GCTCTTC	1 cut(s)	673
PctI	GAATGC	1 cut(s)	323
PfeI	GAWTC	2 cut(s)	285, 346
PkrI	GCNGC	3 cut(s)	201, 323, 603
PleI	GAGTC	3 cut(s)	2, 93, 256
PpsI	GAGTC	3 cut(s)	2, 93, 256
PpuMI	RGGWCCY	1 cut(s)	441
PshBI	ATTAAT	1 cut(s)	744
Psp5II	RGGWCCY	1 cut(s)	441
Psp6I	CCWGG	4 cut(s)	112, 431, 580, 661
PspGI	CCWGG	4 cut(s)	112, 431, 580, 661
PspN4I	GGNNCC	3 cut(s)	443, 579, 755
PspPI	GGNCC	2 cut(s)	360, 441
PspPPI	RGGWCCY	1 cut(s)	441
PstI	CTGCAG	1 cut(s)	297
PstNI	CAGNNNCTG	1 cut(s)	596
RseI	CAYNNNNRTG	1 cut(s)	401
SapI	GCTCTTC	1 cut(s)	673
SaqAI	TTAA	1 cut(s)	744
SatI	GCNGC	3 cut(s)	200, 322, 602
Sau3AI	GATC	1 cut(s)	695
Sau96I	GGNCC	2 cut(s)	360, 441
SchI	GAGTC	3 cut(s)	2, 93, 257
ScrFI	CCNGG	4 cut(s)	114, 433, 582, 663
SduI	GDGCHC	1 cut(s)	279
SetI	ASST	9 cut(s)	215, 326, 520, 532, 575, 583, 606, 637, 673
SfaNI	GCATC	1 cut(s)	259
SfcI	CTRYAG	1 cut(s)	293
SinI	GGWCC	2 cut(s)	360, 441
SmiMI	CAYNNNNRTG	1 cut(s)	401
SmlI	CTYRAG	3 cut(s)	208, 421, 605
SmoI	CTYRAG	3 cut(s)	208, 421, 605
Sse9I	AATT	8 cut(s)	18, 188, 222, 235, 255, 415, 655, 706
SsiI	CCGC	1 cut(s)	110
StyD4I	CCNGG	4 cut(s)	112, 431, 580, 661
TaaI	ACNGT	2 cut(s)	615, 690
TasI	AATT	8 cut(s)	18, 188, 222, 235, 255, 415, 655, 706
TfiI	GAWTC	2 cut(s)	285, 346
Tru1I	TTAA	1 cut(s)	744
Tru9I	TTAA	1 cut(s)	744
TseFI	GTSAC	1 cut(s)	380
TseI	GCWGC	3 cut(s)	199, 321, 601
Tsp45I	GTSAC	1 cut(s)	380
TspDTI	ATGAA	7 cut(s)	181, 277, 315, 540, 616, 644, 747
VpaK11BI	GGWCC	2 cut(s)	360, 441
VspI	ATTAAT	1 cut(s)	744
XapI	RAATTY	4 cut(s)	188, 222, 235, 655
XceI	RCATGY	1 cut(s)	388
XcmI	CCANNNNNNNNNTGG	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.