Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0009644

Physical Location & Seq

Genomic Coordinates Forward (+)

17466110 .. 17467000

Gene Structure 891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1189900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGCAATCCAATCCATTATTCAATGACAAGGGAAATCAAAGAAACATGAGTACTTCTGACTCTAAAGTTGTTCTAGTTACAGGTTGTGCCAAAGGTGGCATTGGCTATGAGTACTGTAAGGCTTTCGCCGAGCAGAAATGCATCGTCTTTGCCACCGACATCTTACACCGCATGAACGACATAGACTTAAGTCCTTCAAAATACATTGACACACTTGAGCTTGATGTGTCTTCAGACGAAAGTGTCGCATTGGCCGTAAAGACGATTATTTCCAAGTATGGCCGCATCGACGTTCTTGTTAATAATGCCGGAATAGGAAGCACCGGACCTCTCGCCGAGCTTCCGTTAGAGACTATAAGAAGGGCTTGGGAGATTAACACGCTTGGGCAACTGAGACTTGTACAACAAGTGGTGCCATACATGGCATCACAGCGCAGAGGCAGCATTGTAAATATCGGAAGCGTTGTGGGCAAAGTGCCAACACCATGGGCAGGGTCTTATTGTGCAAGCAAGGCAGCAGTGCATGCAATGTCAAATACTTTAAGGGTTGAACTGAAGCCGTTTGGTATTGATGTTGTGCTGGTTATGCCTGGGGCAGTTAGATCAAATTTTGGGAGTGCAAATGTAGAGAGGTTGGGCGGTCAGGATTGGAAACTATATAAGGAGTTTAAGGAGGCCATTGCTGAGAGAGCCAGGGCTTCTCAAGGAAGAAAAGCAACGGATGGTGGTGTGTTTGCTAGGCATGTTGCACAGAAAGTTTTGAGGCCCAGACCACCAAAGGTTATTAGTTTTGGTCACATGACTGGTTTGTTTGCTGTGCTTTCTTGGTCTCCTCTTTGGGTGAGAGATATCTTCTTCTCAACTCGATTCAAATTACATAAGAAGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000140 GO:0003674 GO:0003824 GO:0004806 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005811 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006644 GO:0006650 GO:0006654 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009056 GO:0009058 GO:0009987 GO:0012505 GO:0016042 GO:0016298 GO:0016491 GO:0016614 GO:0016616 GO:0016787 GO:0016788 GO:0019433 GO:0019637 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046461 GO:0046464 GO:0046473 GO:0046474 GO:0046486 GO:0046503 GO:0052689 GO:0055114 GO:0071704 GO:0090407 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

297

Amino Acids

32.54

Weight (kDa)

9.74

Isoelectric Point (pI)

32.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	22 - 206	3.1e-48	short chain dehydrogenase
adh_short_C2	PF13561	28 - 206	1.9e-34	Enoyl-(Acyl carrier protein) reductase
SDR	PF23441	76 - 203	8.9e-08	SDR-like rossmann domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009644)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18260
malus_domestica	MD02G1189900.v1.1
prunus_persica	Prupe.6G216500_v2.0.a1
pyrus_communis	pycom15g26350
rosa_chinensis	RchiOBHm_Chr2g0108801 RchiOBHm_Chr2g0108811 RchiOBHm_Chr2g0108821
rosa_laevigata	RLG00000017691
rosa_multiflora	Rmu_sc0003973.1_g000018 Rmu_sc0003973.1_g000021
rosa_roxburghii	Rroxscaffold_2G00134790
rosa_rugosa	Rorug02G0156200
rosa_samantha	Rh2AG206400 Rh2AG206500 Rh2BG217700 Rh2CG209400 Rh2CG209500 Rh2CG209600 Rh2DG212700 Rh2DG212800
rosa_wichuraiana	Rw2G016410 Rw2G016420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	242
AccB1I	GGYRCC	1 cut(s)	412
AciI	CCGC	3 cut(s)	169, 283, 639
AcoI	YGGCCR	2 cut(s)	252, 280
AcsI	RAATTY	1 cut(s)	607
AcuI	CTGAAG	2 cut(s)	216, 575
AfaI	GTAC	3 cut(s)	52, 113, 402
AfiI	CCNNNNNNNGG	1 cut(s)	491
AflII	CTTAAG	1 cut(s)	187
AgsI	TTSAA	4 cut(s)	22, 198, 551, 871
AjnI	CCWGG	2 cut(s)	589, 692
AjuI	GAANNNNNNNTTGG	1 cut(s)	34
AluBI	AGCT	3 cut(s)	220, 340, 886
AluI	AGCT	3 cut(s)	220, 340, 886
Alw26I	GTCTC	3 cut(s)	344, 388, 834
AoxI	GGCC	4 cut(s)	252, 280, 675, 764
ApeKI	GCWGC	2 cut(s)	441, 515
ApoI	RAATTY	1 cut(s)	607
AspLEI	GCGC	1 cut(s)	435
AspS9I	GGNCC	2 cut(s)	326, 765
AsuHPI	GGTGA	1 cut(s)	853
AvaII	GGWCC	1 cut(s)	326
BanI	GGYRCC	1 cut(s)	412
BbsI	GAAGAC	1 cut(s)	222
BbvI	GCAGC	2 cut(s)	453, 527
BccI	CCATC	1 cut(s)	716
BceAI	ACGGC	2 cut(s)	239, 544
BciT130I	CCWGG	2 cut(s)	591, 694
BcoDI	GTCTC	3 cut(s)	344, 388, 834
BfaI	CTAG	2 cut(s)	74, 738
BfrI	CTTAAG	1 cut(s)	187
BisI	GCNGC	3 cut(s)	283, 442, 516
BlsI	GCNGC	3 cut(s)	284, 443, 517
BmcAI	AGTACT	2 cut(s)	52, 113
Bme1390I	CCNGG	2 cut(s)	591, 694
Bme18I	GGWCC	1 cut(s)	326
BmgT120I	GGNCC	2 cut(s)	326, 765
BmiI	GGNNCC	1 cut(s)	414
BmrFI	CCNGG	2 cut(s)	591, 694
BmsI	GCATC	3 cut(s)	150, 294, 434
BoxI	GACNNNNGTC	1 cut(s)	189
BpiI	GAAGAC	1 cut(s)	222
BpuEI	CTTGAG	2 cut(s)	236, 687
BsaI	GGTCTC	1 cut(s)	834
BsaJI	CCNNGG	3 cut(s)	485, 590, 693
BsaWI	WCCGGW	1 cut(s)	323
Bsc4I	CCNNNNNNNGG	1 cut(s)	491
Bse1I	ACTGG	1 cut(s)	808
Bse3DI	GCAATG	2 cut(s)	534, 678
BseBI	CCWGG	2 cut(s)	591, 694
BseDI	CCNNGG	3 cut(s)	485, 590, 693
BseGI	GGATG	1 cut(s)	727
BseLI	CCNNNNNNNGG	1 cut(s)	491
BseMI	GCAATG	2 cut(s)	534, 678
BseMII	CTCAG	2 cut(s)	383, 675
BseNI	ACTGG	1 cut(s)	808
BseRI	GAGGAG	1 cut(s)	822
BseXI	GCAGC	2 cut(s)	453, 527
BshFI	GGCC	4 cut(s)	254, 282, 677, 766
BshNI	GGYRCC	1 cut(s)	412
BsiSI	CCGG	2 cut(s)	309, 324
BslI	CCNNNNNNNGG	1 cut(s)	491
BsmAI	GTCTC	3 cut(s)	344, 388, 834
BsnI	GGCC	4 cut(s)	254, 282, 677, 766
Bso31I	GGTCTC	1 cut(s)	834
Bsp1407I	TGTACA	1 cut(s)	400
Bsp143I	GATC	1 cut(s)	602
Bsp19I	CCATGG	1 cut(s)	485
BspACI	CCGC	3 cut(s)	169, 283, 639
BspANI	GGCC	4 cut(s)	254, 282, 677, 766
BspCNI	CTCAG	2 cut(s)	384, 676
BspLI	GGNNCC	1 cut(s)	414
BspT107I	GGYRCC	1 cut(s)	412
BspTI	CTTAAG	1 cut(s)	187
BspTNI	GGTCTC	1 cut(s)	834
BsrDI	GCAATG	2 cut(s)	534, 678
BsrGI	TGTACA	1 cut(s)	400
BsrI	ACTGG	1 cut(s)	808
BssECI	CCNNGG	3 cut(s)	485, 590, 693
BssMI	GATC	1 cut(s)	602
BssT1I	CCWWGG	1 cut(s)	485
Bst2UI	CCWGG	2 cut(s)	591, 694
Bst4CI	ACNGT	1 cut(s)	116
BstAFI	CTTAAG	1 cut(s)	187
BstAPI	GCANNNNNTGC	1 cut(s)	524
BstAUI	TGTACA	1 cut(s)	400
BstC8I	GCNNGC	2 cut(s)	508, 525
BstDEI	CTNAG	2 cut(s)	392, 684
BstDSI	CCRYGG	1 cut(s)	485
BstF5I	GGATG	1 cut(s)	727
BstHHI	GCGC	1 cut(s)	435
BstKTI	GATC	1 cut(s)	605
BstMAI	GTCTC	3 cut(s)	344, 388, 834
BstMBI	GATC	1 cut(s)	602
BstMWI	GCNNNNNNNGC	6 cut(s)	441, 468, 512, 524, 586, 689
BstNI	CCWGG	2 cut(s)	591, 694
BstNSI	RCATGY	2 cut(s)	527, 746
BstPAI	GACNNNNGTC	1 cut(s)	189
BstSCI	CCNGG	2 cut(s)	589, 692
BstV1I	GCAGC	2 cut(s)	453, 527
BstV2I	GAAGAC	1 cut(s)	222
BstXI	CCANNNNNNTGG	1 cut(s)	486
BsuRI	GGCC	4 cut(s)	254, 282, 677, 766
BtgI	CCRYGG	1 cut(s)	485
BtsCI	GGATG	1 cut(s)	727
BtsI	GCAGTG	1 cut(s)	525
BtsIMutI	CAGTG	1 cut(s)	525
Cac8I	GCNNGC	2 cut(s)	508, 525
CfoI	GCGC	1 cut(s)	435
Cfr13I	GGNCC	2 cut(s)	326, 765
Csp6I	GTAC	3 cut(s)	51, 112, 401
CviAII	CATG	7 cut(s)	46, 172, 421, 486, 524, 743, 799
CviQI	GTAC	3 cut(s)	51, 112, 401
DdeI	CTNAG	2 cut(s)	392, 684
DpnI	GATC	1 cut(s)	604
DpnII	GATC	1 cut(s)	602
DrdI	GACNNNNNNGTC	1 cut(s)	242
DseDI	GACNNNNNNGTC	1 cut(s)	242
EaeI	YGGCCR	2 cut(s)	252, 280
Eco130I	CCWWGG	1 cut(s)	485
Eco31I	GGTCTC	1 cut(s)	834
Eco32I	GATATC	1 cut(s)	850
Eco47I	GGWCC	1 cut(s)	326
Eco57I	CTGAAG	2 cut(s)	216, 575
EcoRII	CCWGG	2 cut(s)	589, 692
EcoRV	GATATC	1 cut(s)	850
EcoT14I	CCWWGG	1 cut(s)	485
EcoT22I	ATGCAT	1 cut(s)	143
ErhI	CCWWGG	1 cut(s)	485
FaeI	CATG	7 cut(s)	49, 175, 424, 489, 527, 746, 802
FalI	AAGNNNNNCTT	2 cut(s)	349, 381
FatI	CATG	7 cut(s)	45, 171, 420, 485, 523, 742, 798
Fnu4HI	GCNGC	3 cut(s)	283, 442, 516
FokI	GGATG	1 cut(s)	734
Fsp4HI	GCNGC	3 cut(s)	283, 442, 516
FspBI	CTAG	2 cut(s)	74, 738
GlaI	GCGC	1 cut(s)	434
GluI	GCNGC	3 cut(s)	283, 442, 516
HaeIII	GGCC	4 cut(s)	254, 282, 677, 766
HapII	CCGG	2 cut(s)	309, 324
HhaI	GCGC	1 cut(s)	435
Hin1II	CATG	7 cut(s)	49, 175, 424, 489, 527, 746, 802
Hin6I	GCGC	1 cut(s)	433
HinP1I	GCGC	1 cut(s)	433
HinfI	GANTC	2 cut(s)	59, 867
HpaII	CCGG	2 cut(s)	309, 324
HphI	GGTGA	1 cut(s)	853
Hpy188I	TCNGA	3 cut(s)	58, 235, 458
Hpy188III	TCNNGA	1 cut(s)	644
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	2 cut(s)	204, 354
HpyCH4III	ACNGT	1 cut(s)	116
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	7 cut(s)	4, 141, 506, 523, 527, 620, 749
HpyF10VI	GCNNNNNNNGC	6 cut(s)	441, 468, 512, 524, 586, 689
HpyF3I	CTNAG	2 cut(s)	392, 684
HpySE526I	ACGT	1 cut(s)	291
Hsp92II	CATG	7 cut(s)	49, 175, 424, 489, 527, 746, 802
HspAI	GCGC	1 cut(s)	433
Kzo9I	GATC	1 cut(s)	602
Lsp1109I	GCAGC	2 cut(s)	453, 527
LweI	GCATC	3 cut(s)	150, 294, 434
MaeI	CTAG	2 cut(s)	74, 738
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	2 cut(s)	76, 794
MalI	GATC	1 cut(s)	604
MboI	GATC	1 cut(s)	602
MboII	GAAGA	4 cut(s)	222, 720, 844, 847
MluCI	AATT	2 cut(s)	607, 872
MlyI	GAGTC	1 cut(s)	53
MnlI	CCTC	6 cut(s)	339, 431, 624, 667, 756, 843
Mph1103I	ATGCAT	1 cut(s)	143
MseI	TTAA	5 cut(s)	188, 300, 375, 542, 669
MspCI	CTTAAG	1 cut(s)	187
MspI	CCGG	2 cut(s)	309, 324
MspR9I	CCNGG	2 cut(s)	591, 694
MvaI	CCWGG	2 cut(s)	591, 694
MwoI	GCNNNNNNNGC	6 cut(s)	441, 468, 512, 524, 586, 689
NcoI	CCATGG	1 cut(s)	485
NdeII	GATC	1 cut(s)	602
NlaIII	CATG	7 cut(s)	49, 175, 424, 489, 527, 746, 802
NlaIV	GGNNCC	1 cut(s)	414
NmeAIII	GCCGAG	2 cut(s)	154, 361
NmuCI	GTSAC	1 cut(s)	794
NsiI	ATGCAT	1 cut(s)	143
NspI	RCATGY	2 cut(s)	527, 746
PaeI	GCATGC	1 cut(s)	527
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	867
PkrI	GCNGC	3 cut(s)	284, 443, 517
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
PshAI	GACNNNNGTC	1 cut(s)	189
Psp6I	CCWGG	2 cut(s)	589, 692
PspGI	CCWGG	2 cut(s)	589, 692
PspN4I	GGNNCC	1 cut(s)	414
PspPI	GGNCC	2 cut(s)	326, 765
RsaI	GTAC	3 cut(s)	52, 113, 402
RsaNI	GTAC	3 cut(s)	51, 112, 401
SaqAI	TTAA	5 cut(s)	188, 300, 375, 542, 669
SatI	GCNGC	3 cut(s)	283, 442, 516
Sau3AI	GATC	1 cut(s)	602
Sau96I	GGNCC	2 cut(s)	326, 765
ScaI	AGTACT	2 cut(s)	52, 113
SchI	GAGTC	1 cut(s)	53
ScrFI	CCNGG	2 cut(s)	591, 694
SetI	ASST	9 cut(s)	85, 97, 222, 294, 331, 342, 635, 783, 888
SfaNI	GCATC	3 cut(s)	150, 294, 434
SinI	GGWCC	1 cut(s)	326
SmlI	CTYRAG	3 cut(s)	187, 215, 702
SmoI	CTYRAG	3 cut(s)	187, 215, 702
SphI	GCATGC	1 cut(s)	527
Sse9I	AATT	2 cut(s)	607, 872
SsiI	CCGC	3 cut(s)	169, 283, 639
SspMI	CTAG	2 cut(s)	74, 738
StyD4I	CCNGG	2 cut(s)	589, 692
StyI	CCWWGG	1 cut(s)	485
TaaI	ACNGT	1 cut(s)	116
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	2 cut(s)	288, 865
TasI	AATT	2 cut(s)	607, 872
TatI	WGTACW	3 cut(s)	50, 111, 400
TauI	GCSGC	1 cut(s)	285
TfiI	GAWTC	1 cut(s)	867
Tru1I	TTAA	5 cut(s)	188, 300, 375, 542, 669
Tru9I	TTAA	5 cut(s)	188, 300, 375, 542, 669
TscAI	CASTG	1 cut(s)	525
TseFI	GTSAC	1 cut(s)	794
TseI	GCWGC	2 cut(s)	441, 515
Tsp45I	GTSAC	1 cut(s)	794
TspDTI	ATGAA	1 cut(s)	188
TspGWI	ACGGA	2 cut(s)	333, 734
TspRI	CASTG	1 cut(s)	525
Vha464I	CTTAAG	1 cut(s)	187
VpaK11BI	GGWCC	1 cut(s)	326
XapI	RAATTY	1 cut(s)	607
XceI	RCATGY	2 cut(s)	527, 746
XspI	CTAG	2 cut(s)	74, 738
ZrmI	AGTACT	2 cut(s)	52, 113
Zsp2I	ATGCAT	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.