Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009644

Physical Location & Seq

Genomic Coordinates Reverse (-)

72320641 .. 72321486

Gene Structure 846 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00134790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGAGTGACTCTAAGGTTGTTCTAGTCACAGGTTGTGCCAGAGGTGGGATCGGCTACGAGTACTGCAAAGCTTTTGCTGAGCACAAATGCAAGGTCTTTGCAAGTGACATCGCCCAACGCATGGACGACATTGACCTCAAGTCTTTGGATAGTTATGGCATTGACAAGCTCGAGCTCGATGTGTCCTCGGATCAAAGCGTGGAATCGGCCGTCAACACTATCATATCCAAGTGCGGTCGCATCGATGTATTGATCAACAATGCTGGGATTGGAAGCACCGGTCCTCTAGCTGAGCTTCCGCTAGAGACTATAAGAAGGGCATGGGAAATTAACACGTTGGGACAATTGAGGTTGGTCCAGCAAGTTGTGCCGCACATGGCGTCACGGCGCAGTGGCAGCATTGTAAATATCGGGAGCATCGTGGGCAAAGTGCCGACCCCTTGGGCAGGGTCATATTGTGCAAGCAAGGCATATGTTCATGCCGTGTCAAACACACTGAGGGTGGAACTGAAGCCATTTGGGATTGATGTGGTGCTTGTAATGCCAGGGGCGGTTAGATCGAATTTTGGGAGTGCTAATGTTGAAAGATTGGCGAATCATGATTGGAAACTCTACAAGGATTTCAAGGAGGCAATTGCAGAGAGAGCTGCGGCTTCTCAAGGGGGTAAAGCAACTGAGGCTAGTGTGTTTGCTAAGCATGTGGCACGGAAGGTTTTGGGTCCTAAACCACCAAGGCTAATTACTTTTGGTCACATGACTGGTTTGTTTGCTGTGCTTTCTTGCTCTCCACTTTGGGTGAGAGATCTTTTCCTTTCAACTCGTTTCAACTTAAACAAGAAGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000140 GO:0003674 GO:0003824 GO:0004806 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005811 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006644 GO:0006650 GO:0006654 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009056 GO:0009058 GO:0009987 GO:0012505 GO:0016042 GO:0016298 GO:0016491 GO:0016614 GO:0016616 GO:0016787 GO:0016788 GO:0019433 GO:0019637 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046461 GO:0046464 GO:0046473 GO:0046474 GO:0046486 GO:0046503 GO:0052689 GO:0055114 GO:0071704 GO:0090407 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

281

Amino Acids

30.5

Weight (kDa)

9.28

Isoelectric Point (pI)

28.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	5 - 191	5.4e-47	short chain dehydrogenase
SDR	PF23441	6 - 189	1.2e-07	SDR-like rossmann domain
KR	PF08659	7 - 167	2.6e-07	KR domain
adh_short_C2	PF13561	12 - 192	1.4e-34	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009644)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18260
malus_domestica	MD02G1189900.v1.1
prunus_persica	Prupe.6G216500_v2.0.a1
pyrus_communis	pycom15g26350
rosa_chinensis	RchiOBHm_Chr2g0108801 RchiOBHm_Chr2g0108811 RchiOBHm_Chr2g0108821
rosa_laevigata	RLG00000017691
rosa_multiflora	Rmu_sc0003973.1_g000018 Rmu_sc0003973.1_g000021
rosa_roxburghii	Rroxscaffold_2G00134790
rosa_rugosa	Rorug02G0156200
rosa_samantha	Rh2AG206400 Rh2AG206500 Rh2BG217700 Rh2CG209400 Rh2CG209500 Rh2CG209600 Rh2DG212700 Rh2DG212800
rosa_wichuraiana	Rw2G016410 Rw2G016420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	121
AciI	CCGC	5 cut(s)	234, 299, 371, 551, 650
AclWI	GGATC	2 cut(s)	56, 198
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	1 cut(s)	562
AcuI	CTGAAG	1 cut(s)	530
AcyI	GRCGYC	1 cut(s)	380
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	3 cut(s)	45, 121, 446
AflIII	ACRYGT	1 cut(s)	333
AgeI	ACCGGT	1 cut(s)	278
AgsI	TTSAA	4 cut(s)	584, 625, 816, 826
AhdI	GACNNNNNGTC	1 cut(s)	139
AjnI	CCWGG	1 cut(s)	544
AluBI	AGCT	6 cut(s)	71, 169, 175, 290, 295, 647
AluI	AGCT	6 cut(s)	71, 169, 175, 290, 295, 647
Alw21I	GWGCWC	2 cut(s)	84, 177
Alw26I	GTCTC	1 cut(s)	299
AlwI	GGATC	2 cut(s)	56, 198
Ama87I	CYCGRG	1 cut(s)	170
AoxI	GGCC	1 cut(s)	207
ApeKI	GCWGC	2 cut(s)	396, 647
ApoI	RAATTY	1 cut(s)	562
ArsI	GACNNNNNNTTYG	2 cut(s)	78, 110
AsiGI	ACCGGT	1 cut(s)	278
AspLEI	GCGC	1 cut(s)	390
AspS9I	GGNCC	3 cut(s)	281, 355, 719
AsuHPI	GGTGA	1 cut(s)	808
AvaI	CYCGRG	1 cut(s)	170
AvaII	GGWCC	3 cut(s)	281, 355, 719
BanII	GRGCYC	1 cut(s)	177
Bbv12I	GWGCWC	2 cut(s)	84, 177
BbvI	GCAGC	2 cut(s)	408, 634
BceAI	ACGGC	3 cut(s)	194, 401, 467
BciT130I	CCWGG	1 cut(s)	546
BclI	TGATCA	1 cut(s)	252
BcoDI	GTCTC	1 cut(s)	299
BfaI	CTAG	4 cut(s)	23, 287, 302, 681
BglII	AGATCT	1 cut(s)	802
BisI	GCNGC	4 cut(s)	371, 397, 648, 651
BlpI	GCTNAGC	3 cut(s)	78, 291, 693
BlsI	GCNGC	4 cut(s)	372, 398, 649, 652
BmcAI	AGTACT	1 cut(s)	62
Bme1390I	CCNGG	1 cut(s)	546
Bme18I	GGWCC	3 cut(s)	281, 355, 719
BmeRI	GACNNNNNGTC	1 cut(s)	139
BmeT110I	CYCGRG	1 cut(s)	170
BmgT120I	GGNCC	3 cut(s)	281, 355, 719
BmiI	GGNNCC	1 cut(s)	720
BmrFI	CCNGG	1 cut(s)	546
BmsI	GCATC	2 cut(s)	249, 426
Bpu1102I	GCTNAGC	3 cut(s)	78, 291, 693
BpuEI	CTTGAG	2 cut(s)	122, 642
Bsa29I	ATCGAT	1 cut(s)	243
BsaHI	GRCGYC	1 cut(s)	380
BsaJI	CCNNGG	4 cut(s)	186, 440, 545, 731
BsaWI	WCCGGW	1 cut(s)	278
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 121, 446
Bse118I	RCCGGY	1 cut(s)	278
Bse1I	ACTGG	1 cut(s)	763
BseBI	CCWGG	1 cut(s)	546
BseCI	ATCGAT	1 cut(s)	243
BseDI	CCNNGG	4 cut(s)	186, 440, 545, 731
BseLI	CCNNNNNNNGG	3 cut(s)	45, 121, 446
BseMII	CTCAG	4 cut(s)	69, 282, 488, 666
BseNI	ACTGG	1 cut(s)	763
BseX3I	CGGCCG	1 cut(s)	207
BseXI	GCAGC	2 cut(s)	408, 634
BseYI	CCCAGC	1 cut(s)	263
Bsh1285I	CGRYCG	2 cut(s)	210, 238
BshFI	GGCC	1 cut(s)	209
BshTI	ACCGGT	1 cut(s)	278
BshVI	ATCGAT	1 cut(s)	243
BsiEI	CGRYCG	2 cut(s)	210, 238
BsiHKAI	GWGCWC	2 cut(s)	84, 177
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	1 cut(s)	279
BslFI	GGGAC	1 cut(s)	354
BslI	CCNNNNNNNGG	3 cut(s)	45, 121, 446
BsmAI	GTCTC	1 cut(s)	299
BsmFI	GGGAC	1 cut(s)	354
BsnI	GGCC	1 cut(s)	209
BsoBI	CYCGRG	1 cut(s)	170
Bsp1286I	GDGCHC	2 cut(s)	84, 177
Bsp143I	GATC	5 cut(s)	48, 190, 252, 557, 802
Bsp1720I	GCTNAGC	3 cut(s)	78, 291, 693
BspACI	CCGC	5 cut(s)	234, 299, 371, 551, 650
BspANI	GGCC	1 cut(s)	209
BspCNI	CTCAG	4 cut(s)	70, 283, 489, 667
BspDI	ATCGAT	1 cut(s)	243
BspHI	TCATGA	1 cut(s)	598
BspLI	GGNNCC	1 cut(s)	720
BspPI	GGATC	2 cut(s)	56, 198
BsrFI	RCCGGY	1 cut(s)	278
BsrI	ACTGG	1 cut(s)	763
BssAI	RCCGGY	1 cut(s)	278
BssECI	CCNNGG	4 cut(s)	186, 440, 545, 731
BssMI	GATC	5 cut(s)	48, 190, 252, 557, 802
BssNI	GRCGYC	1 cut(s)	380
BssT1I	CCWWGG	2 cut(s)	440, 731
Bst2UI	CCWGG	1 cut(s)	546
BstACI	GRCGYC	1 cut(s)	380
BstAPI	GCANNNNNTGC	1 cut(s)	367
BstC8I	GCNNGC	1 cut(s)	463
BstDEI	CTNAG	6 cut(s)	12, 78, 291, 497, 675, 693
BstENI	CCTNNNNNAGG	1 cut(s)	444
BstHHI	GCGC	1 cut(s)	390
BstKTI	GATC	5 cut(s)	51, 193, 255, 560, 805
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	5 cut(s)	48, 190, 252, 557, 802
BstMCI	CGRYCG	2 cut(s)	210, 238
BstMWI	GCNNNNNNNGC	7 cut(s)	367, 396, 423, 467, 541, 644, 677
BstNI	CCWGG	1 cut(s)	546
BstNSI	RCATGY	1 cut(s)	701
BstSCI	CCNGG	1 cut(s)	544
BstV1I	GCAGC	2 cut(s)	408, 634
BstX2I	RGATCY	1 cut(s)	802
BstYI	RGATCY	1 cut(s)	802
BstZI	CGGCCG	1 cut(s)	207
Bsu15I	ATCGAT	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	209
BsuTUI	ATCGAT	1 cut(s)	243
BtgZI	GCGATG	1 cut(s)	94
BtsI	GCAGTG	1 cut(s)	397
BtsIMutI	CAGTG	2 cut(s)	397, 494
Cac8I	GCNNGC	1 cut(s)	463
CciI	TCATGA	1 cut(s)	598
CfoI	GCGC	1 cut(s)	390
Cfr10I	RCCGGY	1 cut(s)	278
Cfr13I	GGNCC	3 cut(s)	281, 355, 719
ClaI	ATCGAT	1 cut(s)	243
CseI	GACGC	1 cut(s)	369
Csp6I	GTAC	1 cut(s)	61
CspAI	ACCGGT	1 cut(s)	278
CviAII	CATG	7 cut(s)	121, 321, 376, 479, 599, 698, 754
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	6 cut(s)	12, 78, 291, 497, 675, 693
DpnI	GATC	5 cut(s)	50, 192, 254, 559, 804
DpnII	GATC	5 cut(s)	48, 190, 252, 557, 802
DriI	GACNNNNNGTC	1 cut(s)	139
EaeI	YGGCCR	1 cut(s)	207
EagI	CGGCCG	1 cut(s)	207
Eam1105I	GACNNNNNGTC	1 cut(s)	139
Ecl136II	GAGCTC	1 cut(s)	175
EclXI	CGGCCG	1 cut(s)	207
Eco130I	CCWWGG	2 cut(s)	440, 731
Eco24I	GRGCYC	1 cut(s)	177
Eco47I	GGWCC	3 cut(s)	281, 355, 719
Eco52I	CGGCCG	1 cut(s)	207
Eco53kI	GAGCTC	1 cut(s)	175
Eco57I	CTGAAG	1 cut(s)	530
Eco88I	CYCGRG	1 cut(s)	170
EcoICRI	GAGCTC	1 cut(s)	175
EcoNI	CCTNNNNNAGG	1 cut(s)	444
EcoO109I	RGGNCCY	1 cut(s)	719
EcoRII	CCWGG	1 cut(s)	544
EcoT14I	CCWWGG	2 cut(s)	440, 731
EcoT38I	GRGCYC	1 cut(s)	177
ErhI	CCWWGG	2 cut(s)	440, 731
FaeI	CATG	7 cut(s)	124, 324, 379, 482, 602, 701, 757
FaqI	GGGAC	1 cut(s)	354
FatI	CATG	7 cut(s)	120, 320, 375, 478, 598, 697, 753
FauNDI	CATATG	1 cut(s)	472
FbaI	TGATCA	1 cut(s)	252
Fnu4HI	GCNGC	4 cut(s)	371, 397, 648, 651
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	4 cut(s)	371, 397, 648, 651
FspBI	CTAG	4 cut(s)	23, 287, 302, 681
GlaI	GCGC	1 cut(s)	389
GluI	GCNGC	4 cut(s)	371, 397, 648, 651
GsaI	CCCAGC	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	209
HapII	CCGG	1 cut(s)	279
HgaI	GACGC	1 cut(s)	369
HhaI	GCGC	1 cut(s)	390
Hin1I	GRCGYC	1 cut(s)	380
Hin1II	CATG	7 cut(s)	124, 324, 379, 482, 602, 701, 757
Hin6I	GCGC	1 cut(s)	388
HinP1I	GCGC	1 cut(s)	388
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HindIII	AAGCTT	1 cut(s)	69
HinfI	GANTC	3 cut(s)	8, 203, 595
HpaII	CCGG	1 cut(s)	279
HphI	GGTGA	1 cut(s)	808
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	1 cut(s)	190
Hpy188III	TCNNGA	2 cut(s)	412, 599
Hpy8I	GTNNAC	1 cut(s)	214
HpyAV	CCTTC	2 cut(s)	309, 703
HpyCH4IV	ACGT	1 cut(s)	335
HpyCH4V	TGCA	5 cut(s)	66, 90, 101, 461, 638
HpyF10VI	GCNNNNNNNGC	7 cut(s)	367, 396, 423, 467, 541, 644, 677
HpyF3I	CTNAG	6 cut(s)	12, 78, 291, 497, 675, 693
HpySE526I	ACGT	1 cut(s)	335
Hsp92I	GRCGYC	1 cut(s)	380
Hsp92II	CATG	7 cut(s)	124, 324, 379, 482, 602, 701, 757
HspAI	GCGC	1 cut(s)	388
Ksp22I	TGATCA	1 cut(s)	252
Kzo9I	GATC	5 cut(s)	48, 190, 252, 557, 802
LmnI	GCTCC	1 cut(s)	414
LpnPI	CCDG	9 cut(s)	15, 52, 249, 292, 371, 432, 531, 558, 744
Lsp1109I	GCAGC	2 cut(s)	408, 634
LweI	GCATC	2 cut(s)	249, 426
MaeI	CTAG	4 cut(s)	23, 287, 302, 681
MaeII	ACGT	1 cut(s)	335
MaeIII	GTNAC	5 cut(s)	5, 25, 104, 381, 749
MalI	GATC	5 cut(s)	50, 192, 254, 559, 804
MboI	GATC	5 cut(s)	48, 190, 252, 557, 802
MfeI	CAATTG	2 cut(s)	344, 633
MflI	RGATCY	1 cut(s)	802
MhlI	GDGCHC	2 cut(s)	84, 177
MluCI	AATT	5 cut(s)	327, 344, 562, 633, 738
MlyI	GAGTC	1 cut(s)	2
MnlI	CCTC	8 cut(s)	35, 146, 196, 294, 342, 492, 622, 670
MseI	TTAA	2 cut(s)	330, 830
MspI	CCGG	1 cut(s)	279
MspR9I	CCNGG	1 cut(s)	546
MunI	CAATTG	2 cut(s)	344, 633
MvaI	CCWGG	1 cut(s)	546
MwoI	GCNNNNNNNGC	7 cut(s)	367, 396, 423, 467, 541, 644, 677
NdeI	CATATG	1 cut(s)	472
NdeII	GATC	5 cut(s)	48, 190, 252, 557, 802
NlaIII	CATG	7 cut(s)	124, 324, 379, 482, 602, 701, 757
NlaIV	GGNNCC	1 cut(s)	720
NmuCI	GTSAC	5 cut(s)	5, 25, 104, 381, 749
NspI	RCATGY	1 cut(s)	701
PaeR7I	CTCGAG	1 cut(s)	170
PagI	TCATGA	1 cut(s)	598
PcsI	WCGNNNNNNNCGW	1 cut(s)	417
PfeI	GAWTC	2 cut(s)	203, 595
PflMI	CCANNNNNTGG	1 cut(s)	121
PinAI	ACCGGT	1 cut(s)	278
PkrI	GCNGC	4 cut(s)	372, 398, 649, 652
PleI	GAGTC	1 cut(s)	2
PpsI	GAGTC	1 cut(s)	2
PpuMI	RGGWCCY	1 cut(s)	719
Psp124BI	GAGCTC	1 cut(s)	177
Psp5II	RGGWCCY	1 cut(s)	719
Psp6I	CCWGG	1 cut(s)	544
PspFI	CCCAGC	1 cut(s)	263
PspGI	CCWGG	1 cut(s)	544
PspN4I	GGNNCC	1 cut(s)	720
PspPI	GGNCC	3 cut(s)	281, 355, 719
PspPPI	RGGWCCY	1 cut(s)	719
PspXI	VCTCGAGB	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	802
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SacI	GAGCTC	1 cut(s)	177
SaqAI	TTAA	2 cut(s)	330, 830
SatI	GCNGC	4 cut(s)	371, 397, 648, 651
Sau3AI	GATC	5 cut(s)	48, 190, 252, 557, 802
Sau96I	GGNCC	3 cut(s)	281, 355, 719
ScaI	AGTACT	1 cut(s)	62
SchI	GAGTC	1 cut(s)	2
ScrFI	CCNGG	1 cut(s)	546
SduI	GDGCHC	2 cut(s)	84, 177
SfaNI	GCATC	2 cut(s)	249, 426
Sfr274I	CTCGAG	1 cut(s)	170
SinI	GGWCC	3 cut(s)	281, 355, 719
SlaI	CTCGAG	1 cut(s)	170
SmlI	CTYRAG	3 cut(s)	137, 170, 657
SmoI	CTYRAG	3 cut(s)	137, 170, 657
Sse9I	AATT	5 cut(s)	327, 344, 562, 633, 738
SsiI	CCGC	5 cut(s)	234, 299, 371, 551, 650
SspMI	CTAG	4 cut(s)	23, 287, 302, 681
SstI	GAGCTC	1 cut(s)	177
StyD4I	CCNGG	1 cut(s)	544
StyI	CCWWGG	2 cut(s)	440, 731
TaiI	ACGT	1 cut(s)	338
TaqI	TCGA	4 cut(s)	171, 177, 243, 560
TasI	AATT	5 cut(s)	327, 344, 562, 633, 738
TatI	WGTACW	1 cut(s)	60
TauI	GCSGC	2 cut(s)	373, 653
TfiI	GAWTC	2 cut(s)	203, 595
Tru1I	TTAA	2 cut(s)	330, 830
Tru9I	TTAA	2 cut(s)	330, 830
TscAI	CASTG	2 cut(s)	397, 501
TseFI	GTSAC	5 cut(s)	5, 25, 104, 381, 749
TseI	GCWGC	2 cut(s)	396, 647
Tsp45I	GTSAC	5 cut(s)	5, 25, 104, 381, 749
TspDTI	ATGAA	1 cut(s)	467
TspGWI	ACGGA	1 cut(s)	721
TspRI	CASTG	2 cut(s)	397, 501
Van91I	CCANNNNNTGG	1 cut(s)	121
VpaK11BI	GGWCC	3 cut(s)	281, 355, 719
XagI	CCTNNNNNAGG	1 cut(s)	444
XapI	RAATTY	1 cut(s)	562
XceI	RCATGY	1 cut(s)	701
XhoI	CTCGAG	1 cut(s)	170
XspI	CTAG	4 cut(s)	23, 287, 302, 681
ZrmI	AGTACT	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.