Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009644

Physical Location & Seq

Genomic Coordinates Forward (+)

20280154 .. 20280516

Gene Structure 363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48267

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGAGTGACTCTAAGGTTGTTCTAGTCACAGGTTGTGCCAGAGGCGGGATCAGCTACGAGTACTGCAAAGCTTTTGCTGAGCACAAATGCAAGGTCTTTGCAAGTGACATCGCCCAACGCATGGATGACATTGACCTTGAGTCTTTGGATAGTTATGACATTGCCAAGCTCGAGCTCGATGTGTCCTCAGATCAAAGCGTGGAATCGGCCGTCAATACTATCATATCCAAGTGCGGTCACATTAATGTAGTGATCAACAATGCCGGGATTGGAAGCACCTGTCCTCTAGCTGAGCTTCCGCTAGAGACTATTAGAAGGGCCTGGGAAATTAACACGTTGGGACAATTGAGGTTGGTCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000140 GO:0003674 GO:0003824 GO:0004806 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005811 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006644 GO:0006650 GO:0006654 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009056 GO:0009058 GO:0009987 GO:0012505 GO:0016042 GO:0016298 GO:0016491 GO:0016614 GO:0016616 GO:0016787 GO:0016788 GO:0019433 GO:0019637 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046461 GO:0046464 GO:0046473 GO:0046474 GO:0046486 GO:0046503 GO:0052689 GO:0055114 GO:0071704 GO:0090407 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

120

Amino Acids

13.08

Weight (kDa)

4.77

Isoelectric Point (pI)

36.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	5 - 120	5.8e-19	short chain dehydrogenase
adh_short_C2	PF13561	12 - 119	1.9e-15	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009644)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18260
malus_domestica	MD02G1189900.v1.1
prunus_persica	Prupe.6G216500_v2.0.a1
pyrus_communis	pycom15g26350
rosa_chinensis	RchiOBHm_Chr2g0108801 RchiOBHm_Chr2g0108811 RchiOBHm_Chr2g0108821
rosa_laevigata	RLG00000017691
rosa_multiflora	Rmu_sc0003973.1_g000018 Rmu_sc0003973.1_g000021
rosa_roxburghii	Rroxscaffold_2G00134790
rosa_rugosa	Rorug02G0156200
rosa_samantha	Rh2AG206400 Rh2AG206500 Rh2BG217700 Rh2CG209400 Rh2CG209500 Rh2CG209600 Rh2DG212700 Rh2DG212800
rosa_wichuraiana	Rw2G016410 Rw2G016420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	121
AciI	CCGC	3 cut(s)	45, 234, 299
AclWI	GGATC	1 cut(s)	56
AcoI	YGGCCR	1 cut(s)	207
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	2 cut(s)	45, 121
AflIII	ACRYGT	1 cut(s)	333
AhdI	GACNNNNNGTC	1 cut(s)	139
AjnI	CCWGG	1 cut(s)	320
AluBI	AGCT	6 cut(s)	54, 71, 169, 175, 290, 295
AluI	AGCT	6 cut(s)	54, 71, 169, 175, 290, 295
Alw21I	GWGCWC	2 cut(s)	84, 177
Alw26I	GTCTC	1 cut(s)	299
AlwI	GGATC	1 cut(s)	56
Ama87I	CYCGRG	1 cut(s)	170
AoxI	GGCC	2 cut(s)	207, 318
ArsI	GACNNNNNNTTYG	2 cut(s)	78, 110
AseI	ATTAAT	1 cut(s)	243
AspS9I	GGNCC	2 cut(s)	318, 355
AsuC2I	CCSGG	1 cut(s)	265
AvaI	CYCGRG	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	355
BanII	GRGCYC	1 cut(s)	177
Bbv12I	GWGCWC	2 cut(s)	84, 177
BceAI	ACGGC	1 cut(s)	194
BciT130I	CCWGG	1 cut(s)	322
BclI	TGATCA	1 cut(s)	252
BcnI	CCSGG	1 cut(s)	265
BcoDI	GTCTC	1 cut(s)	299
BfaI	CTAG	3 cut(s)	23, 287, 302
BlpI	GCTNAGC	2 cut(s)	78, 291
BmcAI	AGTACT	1 cut(s)	62
Bme1390I	CCNGG	2 cut(s)	265, 322
Bme18I	GGWCC	1 cut(s)	355
BmeRI	GACNNNNNGTC	1 cut(s)	139
BmeT110I	CYCGRG	1 cut(s)	170
BmgT120I	GGNCC	2 cut(s)	318, 355
BmrFI	CCNGG	2 cut(s)	265, 322
Bpu1102I	GCTNAGC	2 cut(s)	78, 291
BpuEI	CTTGAG	1 cut(s)	158
BpuMI	CCSGG	1 cut(s)	265
BsaJI	CCNNGG	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 121
Bse1I	ACTGG	1 cut(s)	358
Bse3DI	GCAATG	1 cut(s)	159
BseBI	CCWGG	1 cut(s)	322
BseDI	CCNNGG	1 cut(s)	321
BseGI	GGATG	1 cut(s)	130
BseLI	CCNNNNNNNGG	2 cut(s)	45, 121
BseMI	GCAATG	1 cut(s)	159
BseMII	CTCAG	3 cut(s)	69, 201, 282
BseNI	ACTGG	1 cut(s)	358
BseX3I	CGGCCG	1 cut(s)	207
Bsh1285I	CGRYCG	1 cut(s)	210
BshFI	GGCC	2 cut(s)	209, 320
BsiEI	CGRYCG	1 cut(s)	210
BsiHKAI	GWGCWC	2 cut(s)	84, 177
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	1 cut(s)	264
BslFI	GGGAC	1 cut(s)	354
BslI	CCNNNNNNNGG	2 cut(s)	45, 121
BsmAI	GTCTC	1 cut(s)	299
BsmFI	GGGAC	1 cut(s)	354
BsnI	GGCC	2 cut(s)	209, 320
BsoBI	CYCGRG	1 cut(s)	170
Bsp1286I	GDGCHC	2 cut(s)	84, 177
Bsp143I	GATC	3 cut(s)	48, 190, 252
Bsp1720I	GCTNAGC	2 cut(s)	78, 291
BspACI	CCGC	3 cut(s)	45, 234, 299
BspANI	GGCC	2 cut(s)	209, 320
BspCNI	CTCAG	3 cut(s)	70, 200, 283
BspPI	GGATC	1 cut(s)	56
BsrDI	GCAATG	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	358
BssECI	CCNNGG	1 cut(s)	321
BssMI	GATC	3 cut(s)	48, 190, 252
Bst2UI	CCWGG	1 cut(s)	322
BstDEI	CTNAG	4 cut(s)	12, 78, 187, 291
BstF5I	GGATG	1 cut(s)	130
BstKTI	GATC	3 cut(s)	51, 193, 255
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	3 cut(s)	48, 190, 252
BstMCI	CGRYCG	1 cut(s)	210
BstMWI	GCNNNNNNNGC	1 cut(s)	51
BstNI	CCWGG	1 cut(s)	322
BstSCI	CCNGG	2 cut(s)	263, 320
BstZI	CGGCCG	1 cut(s)	207
BsuRI	GGCC	2 cut(s)	209, 320
BtgZI	GCGATG	1 cut(s)	94
BtsCI	GGATG	1 cut(s)	130
Cfr13I	GGNCC	2 cut(s)	318, 355
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	1 cut(s)	121
CviJI	RGCY	8 cut(s)	54, 71, 169, 175, 209, 290, 295, 320
CviKI_1	RGCY	8 cut(s)	54, 71, 169, 175, 209, 290, 295, 320
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	4 cut(s)	12, 78, 187, 291
DpnI	GATC	3 cut(s)	50, 192, 254
DpnII	GATC	3 cut(s)	48, 190, 252
DriI	GACNNNNNGTC	1 cut(s)	139
EaeI	YGGCCR	1 cut(s)	207
EagI	CGGCCG	1 cut(s)	207
Eam1105I	GACNNNNNGTC	1 cut(s)	139
Ecl136II	GAGCTC	1 cut(s)	175
EclXI	CGGCCG	1 cut(s)	207
Eco24I	GRGCYC	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	355
Eco52I	CGGCCG	1 cut(s)	207
Eco53kI	GAGCTC	1 cut(s)	175
Eco88I	CYCGRG	1 cut(s)	170
EcoICRI	GAGCTC	1 cut(s)	175
EcoO109I	RGGNCCY	1 cut(s)	318
EcoRII	CCWGG	1 cut(s)	320
EcoT38I	GRGCYC	1 cut(s)	177
FaeI	CATG	1 cut(s)	124
FaiI	YATR	3 cut(s)	122, 156, 224
FaqI	GGGAC	1 cut(s)	354
FatI	CATG	1 cut(s)	120
FauI	CCCGC	1 cut(s)	38
FbaI	TGATCA	1 cut(s)	252
FokI	GGATG	1 cut(s)	137
FriOI	GRGCYC	1 cut(s)	177
FspBI	CTAG	3 cut(s)	23, 287, 302
HaeIII	GGCC	2 cut(s)	209, 320
HapII	CCGG	1 cut(s)	264
Hin1II	CATG	1 cut(s)	124
HindIII	AAGCTT	1 cut(s)	69
HinfI	GANTC	3 cut(s)	8, 140, 203
HpaII	CCGG	1 cut(s)	264
Hpy188I	TCNGA	1 cut(s)	190
HpyAV	CCTTC	1 cut(s)	309
HpyCH4IV	ACGT	1 cut(s)	335
HpyCH4V	TGCA	3 cut(s)	66, 90, 101
HpyF10VI	GCNNNNNNNGC	1 cut(s)	51
HpyF3I	CTNAG	4 cut(s)	12, 78, 187, 291
HpySE526I	ACGT	1 cut(s)	335
Hsp92II	CATG	1 cut(s)	124
Ksp22I	TGATCA	1 cut(s)	252
Kzo9I	GATC	3 cut(s)	48, 190, 252
LpnPI	CCDG	6 cut(s)	15, 52, 277, 292, 307, 334
MaeI	CTAG	3 cut(s)	23, 287, 302
MaeII	ACGT	1 cut(s)	335
MaeIII	GTNAC	4 cut(s)	5, 25, 104, 236
MalI	GATC	3 cut(s)	50, 192, 254
MboI	GATC	3 cut(s)	48, 190, 252
MfeI	CAATTG	1 cut(s)	344
MhlI	GDGCHC	2 cut(s)	84, 177
MluCI	AATT	2 cut(s)	327, 344
MlyI	GAGTC	2 cut(s)	2, 149
MnlI	CCTC	4 cut(s)	35, 196, 294, 342
MseI	TTAA	2 cut(s)	243, 330
MslI	CAYNNNNRTG	1 cut(s)	243
MspI	CCGG	1 cut(s)	264
MspR9I	CCNGG	2 cut(s)	265, 322
MunI	CAATTG	1 cut(s)	344
MvaI	CCWGG	1 cut(s)	322
MwoI	GCNNNNNNNGC	1 cut(s)	51
NciI	CCSGG	1 cut(s)	265
NdeII	GATC	3 cut(s)	48, 190, 252
NlaIII	CATG	1 cut(s)	124
NmuCI	GTSAC	4 cut(s)	5, 25, 104, 236
PaeR7I	CTCGAG	1 cut(s)	170
PfeI	GAWTC	1 cut(s)	203
PflMI	CCANNNNNTGG	1 cut(s)	121
PleI	GAGTC	2 cut(s)	2, 148
PpsI	GAGTC	2 cut(s)	2, 148
PshBI	ATTAAT	1 cut(s)	243
Psp124BI	GAGCTC	1 cut(s)	177
Psp6I	CCWGG	1 cut(s)	320
PspGI	CCWGG	1 cut(s)	320
PspPI	GGNCC	2 cut(s)	318, 355
PspXI	VCTCGAGB	1 cut(s)	170
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
RseI	CAYNNNNRTG	1 cut(s)	243
SacI	GAGCTC	1 cut(s)	177
SaqAI	TTAA	2 cut(s)	243, 330
Sau3AI	GATC	3 cut(s)	48, 190, 252
Sau96I	GGNCC	2 cut(s)	318, 355
ScaI	AGTACT	1 cut(s)	62
SchI	GAGTC	2 cut(s)	2, 149
ScrFI	CCNGG	2 cut(s)	265, 322
SduI	GDGCHC	2 cut(s)	84, 177
Sfr274I	CTCGAG	1 cut(s)	170
SinI	GGWCC	1 cut(s)	355
SlaI	CTCGAG	1 cut(s)	170
SmiMI	CAYNNNNRTG	1 cut(s)	243
SmlI	CTYRAG	2 cut(s)	137, 170
SmoI	CTYRAG	2 cut(s)	137, 170
Sse9I	AATT	2 cut(s)	327, 344
SsiI	CCGC	3 cut(s)	45, 234, 299
SspMI	CTAG	3 cut(s)	23, 287, 302
SstI	GAGCTC	1 cut(s)	177
StyD4I	CCNGG	2 cut(s)	263, 320
TaiI	ACGT	1 cut(s)	338
TaqI	TCGA	2 cut(s)	171, 177
TasI	AATT	2 cut(s)	327, 344
TatI	WGTACW	1 cut(s)	60
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	2 cut(s)	243, 330
Tru9I	TTAA	2 cut(s)	243, 330
TseFI	GTSAC	4 cut(s)	5, 25, 104, 236
Tsp45I	GTSAC	4 cut(s)	5, 25, 104, 236
Van91I	CCANNNNNTGG	1 cut(s)	121
VpaK11BI	GGWCC	1 cut(s)	355
VspI	ATTAAT	1 cut(s)	243
XhoI	CTCGAG	1 cut(s)	170
XspI	CTAG	3 cut(s)	23, 287, 302
ZrmI	AGTACT	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.