Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0009644

Physical Location & Seq

Genomic Coordinates Forward (+)

19397534 .. 19398380

Gene Structure 847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G016420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGAGTGACTCTAAGGTTGTTCTAGTCACAGGTTGTGCCAGAGGCGGGATCGGCTACTATGACATCGCCCAACGCATGGATGACATTGACCTTGAGTCTTTAGATAGTTATGACATTGACAAGCTCGAGCTCGATGTGTCCTCAGATCAAAGTGTGGAATCGGCCGTCAACATTATCATATCCAAGTGCGGTCGCATTGATGTAGTGATCAACAATGCCGGGATTGGAAGCACTGGTCCTCTACCTGAGCTTCCGCTAGAGACTATTAGAAGGGCCTGGGAAATTAACATGTTGGGACAATTGAGGTTGGTCCAGCAAGTTGTGCCACACATGGCGTCACGGCGCAGTGGCAGCATTATAAATATCGGGAGCATCGTGGGCAAAGTGCCGACCCCTTGGGCAGGGTCATATTGTGCAAGCAAGGCATATGTTCATGCCGTGTCAAACACTTTGAGGGTGGAACTGAAGCCATTTGGGATTGATGTGGTGCTTGTAATGCCTGGGGCAGTAAGGTCGAATTTTGGGAGTGCTAATGTTGATAGATTGGCGAATCATGATTGGAAACTCTACAAGGATTTCAAGGAGGCAATTGCAGAGAGAGCTGCTGCTTCTCAAGGGGGGCATGTGGCAAAGAAGGTTTTGGGTCCTAAACCACCAAGGCTAATTAGTTTTGGTCACATGACTGGTTTGTTTGCTGTGCTTTCTTGCTCTCCACTTTGGGTGAGAGATCTTTTCCTTTCAACTCGTTTCAACTTAAACAAGAAGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000140 GO:0003674 GO:0003824 GO:0004806 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005811 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006644 GO:0006650 GO:0006654 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009056 GO:0009058 GO:0009987 GO:0012505 GO:0016042 GO:0016298 GO:0016491 GO:0016614 GO:0016616 GO:0016787 GO:0016788 GO:0019433 GO:0019637 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046461 GO:0046464 GO:0046473 GO:0046474 GO:0046486 GO:0046503 GO:0052689 GO:0055114 GO:0071704 GO:0090407 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

256

Amino Acids

27.86

Weight (kDa)

8.86

Isoelectric Point (pI)

36.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	38 - 175	5.4e-37	short chain dehydrogenase
adh_short_C2	PF13561	39 - 177	3.4e-27	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009644)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18260
malus_domestica	MD02G1189900.v1.1
prunus_persica	Prupe.6G216500_v2.0.a1
pyrus_communis	pycom15g26350
rosa_chinensis	RchiOBHm_Chr2g0108801 RchiOBHm_Chr2g0108811 RchiOBHm_Chr2g0108821
rosa_laevigata	RLG00000017691
rosa_multiflora	Rmu_sc0003973.1_g000018 Rmu_sc0003973.1_g000021
rosa_roxburghii	Rroxscaffold_2G00134790
rosa_rugosa	Rorug02G0156200
rosa_samantha	Rh2AG206400 Rh2AG206500 Rh2BG217700 Rh2CG209400 Rh2CG209500 Rh2CG209600 Rh2DG212700 Rh2DG212800
rosa_wichuraiana	Rw2G016410 Rw2G016420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	359
AccB7I	CCANNNNNTGG	1 cut(s)	76
AciI	CCGC	3 cut(s)	45, 189, 254
AclWI	GGATC	1 cut(s)	56
AcoI	YGGCCR	1 cut(s)	162
AcsI	RAATTY	1 cut(s)	517
AcuI	CTGAAG	1 cut(s)	485
AcyI	GRCGYC	1 cut(s)	335
AfiI	CCNNNNNNNGG	3 cut(s)	45, 76, 401
AflIII	ACRYGT	1 cut(s)	288
AgsI	TTSAA	3 cut(s)	580, 741, 751
AhdI	GACNNNNNGTC	1 cut(s)	94
AjnI	CCWGG	2 cut(s)	275, 499
AluBI	AGCT	4 cut(s)	124, 130, 250, 602
AluI	AGCT	4 cut(s)	124, 130, 250, 602
Alw21I	GWGCWC	1 cut(s)	132
Alw26I	GTCTC	1 cut(s)	254
AlwI	GGATC	1 cut(s)	56
Ama87I	CYCGRG	1 cut(s)	125
AoxI	GGCC	2 cut(s)	162, 273
ApeKI	GCWGC	3 cut(s)	351, 602, 605
ApoI	RAATTY	1 cut(s)	517
AspLEI	GCGC	1 cut(s)	345
AspS9I	GGNCC	4 cut(s)	236, 273, 310, 644
AsuC2I	CCSGG	1 cut(s)	220
AsuHPI	GGTGA	1 cut(s)	733
AvaI	CYCGRG	1 cut(s)	125
AvaII	GGWCC	3 cut(s)	236, 310, 644
BanII	GRGCYC	1 cut(s)	132
Bbv12I	GWGCWC	1 cut(s)	132
BbvI	GCAGC	3 cut(s)	363, 589, 592
BceAI	ACGGC	3 cut(s)	149, 356, 422
BcgI	CGANNNNNNTGC	2 cut(s)	495, 529
BciT130I	CCWGG	2 cut(s)	277, 501
BclI	TGATCA	1 cut(s)	207
BcnI	CCSGG	1 cut(s)	220
BcoDI	GTCTC	1 cut(s)	254
BfaI	CTAG	2 cut(s)	23, 257
BglII	AGATCT	1 cut(s)	727
BisI	GCNGC	3 cut(s)	352, 603, 606
BlsI	GCNGC	3 cut(s)	353, 604, 607
Bme1390I	CCNGG	3 cut(s)	220, 277, 501
Bme18I	GGWCC	3 cut(s)	236, 310, 644
BmeRI	GACNNNNNGTC	1 cut(s)	94
BmeT110I	CYCGRG	1 cut(s)	125
BmgT120I	GGNCC	4 cut(s)	236, 273, 310, 644
BmiI	GGNNCC	1 cut(s)	645
BmrFI	CCNGG	3 cut(s)	220, 277, 501
BmsI	GCATC	1 cut(s)	381
Bpu10I	CCTNAGC	1 cut(s)	246
BpuEI	CTTGAG	2 cut(s)	113, 597
BpuMI	CCSGG	1 cut(s)	220
BsaHI	GRCGYC	1 cut(s)	335
BsaJI	CCNNGG	4 cut(s)	276, 395, 500, 656
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 76, 401
Bse1I	ACTGG	2 cut(s)	238, 688
BseBI	CCWGG	2 cut(s)	277, 501
BseDI	CCNNGG	4 cut(s)	276, 395, 500, 656
BseGI	GGATG	1 cut(s)	85
BseLI	CCNNNNNNNGG	3 cut(s)	45, 76, 401
BseMII	CTCAG	2 cut(s)	156, 237
BseNI	ACTGG	2 cut(s)	238, 688
BseX3I	CGGCCG	1 cut(s)	162
BseXI	GCAGC	3 cut(s)	363, 589, 592
Bsh1285I	CGRYCG	2 cut(s)	165, 193
BshFI	GGCC	2 cut(s)	164, 275
BsiEI	CGRYCG	2 cut(s)	165, 193
BsiHKAI	GWGCWC	1 cut(s)	132
BsiHKCI	CYCGRG	1 cut(s)	125
BsiSI	CCGG	1 cut(s)	219
BslFI	GGGAC	1 cut(s)	309
BslI	CCNNNNNNNGG	3 cut(s)	45, 76, 401
BsmAI	GTCTC	1 cut(s)	254
BsmFI	GGGAC	1 cut(s)	309
BsnI	GGCC	2 cut(s)	164, 275
BsoBI	CYCGRG	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	4 cut(s)	48, 145, 207, 727
BspACI	CCGC	3 cut(s)	45, 189, 254
BspANI	GGCC	2 cut(s)	164, 275
BspCNI	CTCAG	2 cut(s)	155, 238
BspHI	TCATGA	1 cut(s)	553
BspLI	GGNNCC	1 cut(s)	645
BspPI	GGATC	1 cut(s)	56
BsrI	ACTGG	2 cut(s)	238, 688
BssECI	CCNNGG	4 cut(s)	276, 395, 500, 656
BssMI	GATC	4 cut(s)	48, 145, 207, 727
BssNI	GRCGYC	1 cut(s)	335
BssT1I	CCWWGG	2 cut(s)	395, 656
Bst2UI	CCWGG	2 cut(s)	277, 501
BstACI	GRCGYC	1 cut(s)	335
BstAPI	GCANNNNNTGC	1 cut(s)	322
BstC8I	GCNNGC	1 cut(s)	418
BstDEI	CTNAG	3 cut(s)	12, 142, 246
BstENI	CCTNNNNNAGG	1 cut(s)	399
BstF5I	GGATG	1 cut(s)	85
BstHHI	GCGC	1 cut(s)	345
BstKTI	GATC	4 cut(s)	51, 148, 210, 730
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	4 cut(s)	48, 145, 207, 727
BstMCI	CGRYCG	2 cut(s)	165, 193
BstMWI	GCNNNNNNNGC	7 cut(s)	51, 322, 351, 378, 422, 496, 599
BstNI	CCWGG	2 cut(s)	277, 501
BstNSI	RCATGY	2 cut(s)	292, 626
BstSCI	CCNGG	3 cut(s)	218, 275, 499
BstV1I	GCAGC	3 cut(s)	363, 589, 592
BstX2I	RGATCY	1 cut(s)	727
BstYI	RGATCY	1 cut(s)	727
BstZI	CGGCCG	1 cut(s)	162
BsuRI	GGCC	2 cut(s)	164, 275
BtgZI	GCGATG	1 cut(s)	49
BtsCI	GGATG	1 cut(s)	85
BtsI	GCAGTG	1 cut(s)	352
BtsIMutI	CAGTG	2 cut(s)	231, 352
Cac8I	GCNNGC	1 cut(s)	418
CciI	TCATGA	1 cut(s)	553
CfoI	GCGC	1 cut(s)	345
Cfr13I	GGNCC	4 cut(s)	236, 273, 310, 644
CseI	GACGC	1 cut(s)	324
CviAII	CATG	7 cut(s)	76, 289, 331, 434, 554, 623, 679
CviJI	RGCY	9 cut(s)	54, 124, 130, 164, 250, 275, 469, 602, 661
CviKI_1	RGCY	9 cut(s)	54, 124, 130, 164, 250, 275, 469, 602, 661
DdeI	CTNAG	3 cut(s)	12, 142, 246
DpnI	GATC	4 cut(s)	50, 147, 209, 729
DpnII	GATC	4 cut(s)	48, 145, 207, 727
DriI	GACNNNNNGTC	1 cut(s)	94
EaeI	YGGCCR	1 cut(s)	162
EagI	CGGCCG	1 cut(s)	162
Eam1105I	GACNNNNNGTC	1 cut(s)	94
Ecl136II	GAGCTC	1 cut(s)	130
EclXI	CGGCCG	1 cut(s)	162
Eco130I	CCWWGG	2 cut(s)	395, 656
Eco24I	GRGCYC	1 cut(s)	132
Eco47I	GGWCC	3 cut(s)	236, 310, 644
Eco52I	CGGCCG	1 cut(s)	162
Eco53kI	GAGCTC	1 cut(s)	130
Eco57I	CTGAAG	1 cut(s)	485
Eco88I	CYCGRG	1 cut(s)	125
EcoICRI	GAGCTC	1 cut(s)	130
EcoNI	CCTNNNNNAGG	1 cut(s)	399
EcoO109I	RGGNCCY	2 cut(s)	273, 644
EcoRII	CCWGG	2 cut(s)	275, 499
EcoT14I	CCWWGG	2 cut(s)	395, 656
EcoT38I	GRGCYC	1 cut(s)	132
ErhI	CCWWGG	2 cut(s)	395, 656
FaeI	CATG	7 cut(s)	79, 292, 334, 437, 557, 626, 682
FaqI	GGGAC	1 cut(s)	309
FatI	CATG	7 cut(s)	75, 288, 330, 433, 553, 622, 678
FauI	CCCGC	1 cut(s)	38
FauNDI	CATATG	1 cut(s)	427
FbaI	TGATCA	1 cut(s)	207
Fnu4HI	GCNGC	3 cut(s)	352, 603, 606
FokI	GGATG	1 cut(s)	92
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	3 cut(s)	352, 603, 606
FspBI	CTAG	2 cut(s)	23, 257
GlaI	GCGC	1 cut(s)	344
GluI	GCNGC	3 cut(s)	352, 603, 606
HaeIII	GGCC	2 cut(s)	164, 275
HapII	CCGG	1 cut(s)	219
HgaI	GACGC	1 cut(s)	324
HhaI	GCGC	1 cut(s)	345
Hin1I	GRCGYC	1 cut(s)	335
Hin1II	CATG	7 cut(s)	79, 292, 334, 437, 557, 626, 682
Hin6I	GCGC	1 cut(s)	343
HinP1I	GCGC	1 cut(s)	343
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	4 cut(s)	8, 95, 158, 550
HpaII	CCGG	1 cut(s)	219
HphI	GGTGA	1 cut(s)	733
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	1 cut(s)	145
Hpy188III	TCNNGA	2 cut(s)	367, 554
Hpy8I	GTNNAC	1 cut(s)	169
HpyAV	CCTTC	2 cut(s)	264, 628
HpyCH4V	TGCA	2 cut(s)	416, 593
HpyF10VI	GCNNNNNNNGC	7 cut(s)	51, 322, 351, 378, 422, 496, 599
HpyF3I	CTNAG	3 cut(s)	12, 142, 246
Hsp92I	GRCGYC	1 cut(s)	335
Hsp92II	CATG	7 cut(s)	79, 292, 334, 437, 557, 626, 682
HspAI	GCGC	1 cut(s)	343
Ksp22I	TGATCA	1 cut(s)	207
Kzo9I	GATC	4 cut(s)	48, 145, 207, 727
LmnI	GCTCC	1 cut(s)	369
Lsp1109I	GCAGC	3 cut(s)	363, 589, 592
LweI	GCATC	1 cut(s)	381
MaeI	CTAG	2 cut(s)	23, 257
MaeIII	GTNAC	4 cut(s)	5, 25, 336, 674
MalI	GATC	4 cut(s)	50, 147, 209, 729
MboI	GATC	4 cut(s)	48, 145, 207, 727
MfeI	CAATTG	2 cut(s)	299, 588
MflI	RGATCY	1 cut(s)	727
MhlI	GDGCHC	1 cut(s)	132
MluCI	AATT	5 cut(s)	282, 299, 517, 588, 663
MlyI	GAGTC	2 cut(s)	2, 104
MnlI	CCTC	6 cut(s)	35, 151, 249, 297, 447, 577
MseI	TTAA	2 cut(s)	285, 755
MspI	CCGG	1 cut(s)	219
MspR9I	CCNGG	3 cut(s)	220, 277, 501
MunI	CAATTG	2 cut(s)	299, 588
MvaI	CCWGG	2 cut(s)	277, 501
MwoI	GCNNNNNNNGC	7 cut(s)	51, 322, 351, 378, 422, 496, 599
NciI	CCSGG	1 cut(s)	220
NdeI	CATATG	1 cut(s)	427
NdeII	GATC	4 cut(s)	48, 145, 207, 727
NlaIII	CATG	7 cut(s)	79, 292, 334, 437, 557, 626, 682
NlaIV	GGNNCC	1 cut(s)	645
NmuCI	GTSAC	4 cut(s)	5, 25, 336, 674
NspI	RCATGY	2 cut(s)	292, 626
PaeR7I	CTCGAG	1 cut(s)	125
PagI	TCATGA	1 cut(s)	553
PciI	ACATGT	1 cut(s)	288
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PfeI	GAWTC	2 cut(s)	158, 550
PflMI	CCANNNNNTGG	1 cut(s)	76
PkrI	GCNGC	3 cut(s)	353, 604, 607
PleI	GAGTC	2 cut(s)	2, 103
PpsI	GAGTC	2 cut(s)	2, 103
PpuMI	RGGWCCY	1 cut(s)	644
PscI	ACATGT	1 cut(s)	288
PsiI	TTATAA	1 cut(s)	359
Psp124BI	GAGCTC	1 cut(s)	132
Psp5II	RGGWCCY	1 cut(s)	644
Psp6I	CCWGG	2 cut(s)	275, 499
PspGI	CCWGG	2 cut(s)	275, 499
PspN4I	GGNNCC	1 cut(s)	645
PspPI	GGNCC	4 cut(s)	236, 273, 310, 644
PspPPI	RGGWCCY	1 cut(s)	644
PspXI	VCTCGAGB	1 cut(s)	125
PsuI	RGATCY	1 cut(s)	727
SacI	GAGCTC	1 cut(s)	132
SaqAI	TTAA	2 cut(s)	285, 755
SatI	GCNGC	3 cut(s)	352, 603, 606
Sau3AI	GATC	4 cut(s)	48, 145, 207, 727
Sau96I	GGNCC	4 cut(s)	236, 273, 310, 644
SchI	GAGTC	2 cut(s)	2, 104
ScrFI	CCNGG	3 cut(s)	220, 277, 501
SduI	GDGCHC	1 cut(s)	132
SfaNI	GCATC	1 cut(s)	381
Sfr274I	CTCGAG	1 cut(s)	125
SinI	GGWCC	3 cut(s)	236, 310, 644
SlaI	CTCGAG	1 cut(s)	125
SmlI	CTYRAG	3 cut(s)	92, 125, 612
SmoI	CTYRAG	3 cut(s)	92, 125, 612
Sse9I	AATT	5 cut(s)	282, 299, 517, 588, 663
SsiI	CCGC	3 cut(s)	45, 189, 254
SspMI	CTAG	2 cut(s)	23, 257
SstI	GAGCTC	1 cut(s)	132
StyD4I	CCNGG	3 cut(s)	218, 275, 499
StyI	CCWWGG	2 cut(s)	395, 656
TaqI	TCGA	3 cut(s)	126, 132, 515
TasI	AATT	5 cut(s)	282, 299, 517, 588, 663
TfiI	GAWTC	2 cut(s)	158, 550
Tru1I	TTAA	2 cut(s)	285, 755
Tru9I	TTAA	2 cut(s)	285, 755
TscAI	CASTG	2 cut(s)	238, 352
TseFI	GTSAC	4 cut(s)	5, 25, 336, 674
TseI	GCWGC	3 cut(s)	351, 602, 605
Tsp45I	GTSAC	4 cut(s)	5, 25, 336, 674
TspDTI	ATGAA	1 cut(s)	422
TspRI	CASTG	2 cut(s)	238, 352
Van91I	CCANNNNNTGG	1 cut(s)	76
VpaK11BI	GGWCC	3 cut(s)	236, 310, 644
XagI	CCTNNNNNAGG	1 cut(s)	399
XapI	RAATTY	1 cut(s)	517
XceI	RCATGY	2 cut(s)	292, 626
XhoI	CTCGAG	1 cut(s)	125
XspI	CTAG	2 cut(s)	23, 257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.