Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009644

Physical Location & Seq

Genomic Coordinates Reverse (-)

22386017 .. 22386862

Gene Structure 846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G216500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGAGTACTGGTGACTCTAAGGTTGTTCTAATCACAGGTTGTGCCAAAGGTGGCATTGGTTATGAGTACTGCAAGGCCTTTGCGGAACAAAACTGCCGCGTCTTTGCCACAGACATCTCCCAACGCATGCACGACATAGACTTAAATTCCTCGGACAACATCGAGGCACTAGAGCTCGATGTGTCCTCCGACGAAAGTGTAGCGCTTGCTGTAAAGAAGGTTATGTCCAAGTATGGTCGTATTGATGTTCTTGTTAACAATGCTGGGATAGGAAGCACCGGCCCTCTAGCCGAGCTTCCACTAGAGACCATTAGAAGGGCTTGGGAAATTAACACACTAGGGCAACTAAGGGTGGTACAACAAGTGGTGCCTTACATGGCATCGCGGCGCAGTGGAAGTATTGTAAATATCGGAAGCGTTGTGGGCAAAGTGCCAACCCCATGGGCAGGGTCTTATTGTGCAAGCAAGGCTGCGGTGCATGCCATGTCAAACACATTGAGGGTTGAGTTGAAGCCTTTTGGTATTGATGTTGTGCTGGTTGTGCCTGGGGCCGTTAGATCAAATTTTGGGAGTGCTACTGTGGAGAGATTGGGTGGTCATGATTGGAAGCTCTATAAGGATTTCAAGGAGGCCATTGCAGAGAGAGCAAGGGCTTCTCAAGGAAGTAAAGCAACGGATGCTAGTGTGTTTGCTAGGCATGTGGCAAATAAGGTCTTAGGGCCTAAGCCACCAAAGCTTATTAGTTTTGGTCACATGACTGGCCTGTTTGCTGTGCTTTCTTGCTCTCCTCTTTGGGTGAGAGATTTGTTCTTTTCTACTCGTTTCAAACTAAATAAGAAGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000140 GO:0003674 GO:0003824 GO:0004806 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005811 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006644 GO:0006650 GO:0006654 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009056 GO:0009058 GO:0009987 GO:0012505 GO:0016042 GO:0016298 GO:0016491 GO:0016614 GO:0016616 GO:0016787 GO:0016788 GO:0019433 GO:0019637 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046461 GO:0046464 GO:0046473 GO:0046474 GO:0046486 GO:0046503 GO:0052689 GO:0055114 GO:0071704 GO:0090407 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

282

Amino Acids

30.4

Weight (kDa)

9.43

Isoelectric Point (pI)

38.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009644)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18260
malus_domestica	MD02G1189900.v1.1
prunus_persica	Prupe.6G216500_v2.0.a1
pyrus_communis	pycom15g26350
rosa_chinensis	RchiOBHm_Chr2g0108801 RchiOBHm_Chr2g0108811 RchiOBHm_Chr2g0108821
rosa_laevigata	RLG00000017691
rosa_multiflora	Rmu_sc0003973.1_g000018 Rmu_sc0003973.1_g000021
rosa_roxburghii	Rroxscaffold_2G00134790
rosa_rugosa	Rorug02G0156200
rosa_samantha	Rh2AG206400 Rh2AG206500 Rh2BG217700 Rh2CG209400 Rh2CG209500 Rh2CG209600 Rh2DG212700 Rh2DG212800
rosa_wichuraiana	Rw2G016410 Rw2G016420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	367
AccII	CGCG	2 cut(s)	99, 385
AciI	CCGC	4 cut(s)	83, 97, 385, 473
AcsI	RAATTY	2 cut(s)	145, 562
AfaI	GTAC	3 cut(s)	7, 68, 357
AfeI	AGCGCT	1 cut(s)	204
AfiI	CCNNNNNNNGG	2 cut(s)	315, 446
AgsI	TTSAA	3 cut(s)	511, 625, 826
AjnI	CCWGG	1 cut(s)	544
AluBI	AGCT	5 cut(s)	175, 295, 610, 736, 841
AluI	AGCT	5 cut(s)	175, 295, 610, 736, 841
Alw21I	GWGCWC	1 cut(s)	177
Alw26I	GTCTC	1 cut(s)	299
Aor51HI	AGCGCT	1 cut(s)	204
AoxI	GGCC	6 cut(s)	75, 280, 549, 630, 719, 760
ApeKI	GCWGC	1 cut(s)	470
ApoI	RAATTY	2 cut(s)	145, 562
AspLEI	GCGC	2 cut(s)	205, 390
AspS9I	GGNCC	3 cut(s)	281, 549, 719
AsuHPI	GGTGA	2 cut(s)	23, 808
BanI	GGYRCC	1 cut(s)	367
BanII	GRGCYC	1 cut(s)	177
Bbv12I	GWGCWC	1 cut(s)	177
BbvI	GCAGC	1 cut(s)	457
BceAI	ACGGC	1 cut(s)	536
BciT130I	CCWGG	1 cut(s)	546
BcoDI	GTCTC	1 cut(s)	299
BfaI	CTAG	6 cut(s)	170, 287, 302, 338, 681, 693
BfoI	RGCGCY	1 cut(s)	206
BisI	GCNGC	3 cut(s)	97, 386, 471
BlsI	GCNGC	3 cut(s)	98, 387, 472
BmcAI	AGTACT	2 cut(s)	7, 68
Bme1390I	CCNGG	1 cut(s)	546
BmgT120I	GGNCC	3 cut(s)	281, 549, 719
BmiI	GGNNCC	2 cut(s)	369, 550
BmrFI	CCNGG	1 cut(s)	546
BmsI	GCATC	2 cut(s)	389, 667
Bpu10I	CCTNAGC	1 cut(s)	723
BpuEI	CTTGAG	1 cut(s)	642
BsaI	GGTCTC	1 cut(s)	299
BsaJI	CCNNGG	3 cut(s)	150, 440, 545
Bsc4I	CCNNNNNNNGG	2 cut(s)	315, 446
Bse118I	RCCGGY	1 cut(s)	278
Bse1I	ACTGG	2 cut(s)	13, 763
Bse3DI	GCAATG	1 cut(s)	633
BseBI	CCWGG	1 cut(s)	546
BseDI	CCNNGG	3 cut(s)	150, 440, 545
BseGI	GGATG	1 cut(s)	682
BseLI	CCNNNNNNNGG	2 cut(s)	315, 446
BseMI	GCAATG	1 cut(s)	633
BseNI	ACTGG	2 cut(s)	13, 763
BseRI	GAGGAG	1 cut(s)	777
BseXI	GCAGC	1 cut(s)	457
BseYI	CCCAGC	1 cut(s)	263
Bsh1236I	CGCG	2 cut(s)	99, 385
BshFI	GGCC	6 cut(s)	77, 282, 551, 632, 721, 762
BshNI	GGYRCC	1 cut(s)	367
BsiHKAI	GWGCWC	1 cut(s)	177
BsiSI	CCGG	1 cut(s)	279
BslI	CCNNNNNNNGG	2 cut(s)	315, 446
BsmAI	GTCTC	1 cut(s)	299
BsnI	GGCC	6 cut(s)	77, 282, 551, 632, 721, 762
Bso31I	GGTCTC	1 cut(s)	299
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp143I	GATC	1 cut(s)	557
Bsp19I	CCATGG	1 cut(s)	440
BspACI	CCGC	4 cut(s)	83, 97, 385, 473
BspANI	GGCC	6 cut(s)	77, 282, 551, 632, 721, 762
BspFNI	CGCG	2 cut(s)	99, 385
BspHI	TCATGA	1 cut(s)	598
BspLI	GGNNCC	2 cut(s)	369, 550
BspT107I	GGYRCC	1 cut(s)	367
BspTNI	GGTCTC	1 cut(s)	299
BsrDI	GCAATG	1 cut(s)	633
BsrFI	RCCGGY	1 cut(s)	278
BsrI	ACTGG	2 cut(s)	13, 763
BssAI	RCCGGY	1 cut(s)	278
BssECI	CCNNGG	3 cut(s)	150, 440, 545
BssMI	GATC	1 cut(s)	557
BssT1I	CCWWGG	1 cut(s)	440
Bst2UI	CCWGG	1 cut(s)	546
Bst4CI	ACNGT	1 cut(s)	580
BstAPI	GCANNNNNTGC	1 cut(s)	677
BstC8I	GCNNGC	4 cut(s)	128, 207, 463, 480
BstDEI	CTNAG	4 cut(s)	18, 347, 715, 723
BstDSI	CCRYGG	1 cut(s)	440
BstF5I	GGATG	1 cut(s)	682
BstFNI	CGCG	2 cut(s)	99, 385
BstH2I	RGCGCY	1 cut(s)	206
BstHHI	GCGC	2 cut(s)	205, 390
BstKTI	GATC	1 cut(s)	560
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	1 cut(s)	557
BstMWI	GCNNNNNNNGC	7 cut(s)	423, 467, 479, 541, 644, 677, 733
BstNI	CCWGG	1 cut(s)	546
BstNSI	RCATGY	3 cut(s)	130, 482, 701
BstSCI	CCNGG	1 cut(s)	544
BstUI	CGCG	2 cut(s)	99, 385
BstV1I	GCAGC	1 cut(s)	457
BstXI	CCANNNNNNTGG	1 cut(s)	441
BsuRI	GGCC	6 cut(s)	77, 282, 551, 632, 721, 762
BtgI	CCRYGG	1 cut(s)	440
BtgZI	GCGATG	1 cut(s)	366
BtsCI	GGATG	1 cut(s)	682
BtsI	GCAGTG	1 cut(s)	397
BtsIMutI	CAGTG	1 cut(s)	397
Cac8I	GCNNGC	4 cut(s)	128, 207, 463, 480
CciI	TCATGA	1 cut(s)	598
CfoI	GCGC	2 cut(s)	205, 390
Cfr10I	RCCGGY	1 cut(s)	278
Cfr13I	GGNCC	3 cut(s)	281, 549, 719
CseI	GACGC	1 cut(s)	88
Csp6I	GTAC	3 cut(s)	6, 67, 356
CviAII	CATG	8 cut(s)	127, 376, 441, 479, 484, 599, 698, 754
CviQI	GTAC	3 cut(s)	6, 67, 356
DdeI	CTNAG	4 cut(s)	18, 347, 715, 723
DpnI	GATC	1 cut(s)	559
DpnII	GATC	1 cut(s)	557
Ecl136II	GAGCTC	1 cut(s)	175
Eco130I	CCWWGG	1 cut(s)	440
Eco147I	AGGCCT	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	177
Eco31I	GGTCTC	1 cut(s)	299
Eco47III	AGCGCT	1 cut(s)	204
Eco53kI	GAGCTC	1 cut(s)	175
EcoICRI	GAGCTC	1 cut(s)	175
EcoO109I	RGGNCCY	1 cut(s)	719
EcoRII	CCWGG	1 cut(s)	544
EcoT14I	CCWWGG	1 cut(s)	440
EcoT38I	GRGCYC	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	440
FaeI	CATG	8 cut(s)	130, 379, 444, 482, 487, 602, 701, 757
FatI	CATG	8 cut(s)	126, 375, 440, 478, 483, 598, 697, 753
Fnu4HI	GCNGC	3 cut(s)	97, 386, 471
FokI	GGATG	1 cut(s)	689
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	3 cut(s)	97, 386, 471
FspBI	CTAG	6 cut(s)	170, 287, 302, 338, 681, 693
GlaI	GCGC	2 cut(s)	204, 389
GluI	GCNGC	3 cut(s)	97, 386, 471
GsaI	CCCAGC	1 cut(s)	267
HaeII	RGCGCY	1 cut(s)	206
HaeIII	GGCC	6 cut(s)	77, 282, 551, 632, 721, 762
HapII	CCGG	1 cut(s)	279
HgaI	GACGC	1 cut(s)	88
HhaI	GCGC	2 cut(s)	205, 390
Hin1II	CATG	8 cut(s)	130, 379, 444, 482, 487, 602, 701, 757
Hin6I	GCGC	2 cut(s)	203, 388
HinP1I	GCGC	2 cut(s)	203, 388
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HindIII	AAGCTT	1 cut(s)	734
HinfI	GANTC	1 cut(s)	14
HpaI	GTTAAC	1 cut(s)	256
HpaII	CCGG	1 cut(s)	279
HphI	GGTGA	2 cut(s)	23, 808
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	3 cut(s)	154, 190, 413
Hpy188III	TCNNGA	1 cut(s)	599
Hpy8I	GTNNAC	1 cut(s)	256
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	2 cut(s)	211, 309
HpyCH4III	ACNGT	1 cut(s)	580
HpyCH4V	TGCA	5 cut(s)	72, 130, 461, 478, 638
HpyF10VI	GCNNNNNNNGC	7 cut(s)	423, 467, 479, 541, 644, 677, 733
HpyF3I	CTNAG	4 cut(s)	18, 347, 715, 723
Hsp92II	CATG	8 cut(s)	130, 379, 444, 482, 487, 602, 701, 757
HspAI	GCGC	2 cut(s)	203, 388
KspAI	GTTAAC	1 cut(s)	256
Kzo9I	GATC	1 cut(s)	557
LpnPI	CCDG	9 cut(s)	21, 249, 292, 432, 521, 531, 558, 744, 776
Lsp1109I	GCAGC	1 cut(s)	457
LweI	GCATC	2 cut(s)	389, 667
MaeI	CTAG	6 cut(s)	170, 287, 302, 338, 681, 693
MaeIII	GTNAC	2 cut(s)	11, 749
MalI	GATC	1 cut(s)	559
MboI	GATC	1 cut(s)	557
MhlI	GDGCHC	1 cut(s)	177
MluCI	AATT	3 cut(s)	145, 327, 562
MlyI	GAGTC	1 cut(s)	8
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	7 cut(s)	157, 160, 196, 294, 492, 622, 798
MseI	TTAA	3 cut(s)	143, 255, 330
MspI	CCGG	1 cut(s)	279
MspR9I	CCNGG	1 cut(s)	546
MvaI	CCWGG	1 cut(s)	546
MvnI	CGCG	2 cut(s)	99, 385
MwoI	GCNNNNNNNGC	7 cut(s)	423, 467, 479, 541, 644, 677, 733
NcoI	CCATGG	1 cut(s)	440
NdeII	GATC	1 cut(s)	557
NlaIII	CATG	8 cut(s)	130, 379, 444, 482, 487, 602, 701, 757
NlaIV	GGNNCC	2 cut(s)	369, 550
NmeAIII	GCCGAG	1 cut(s)	316
NmuCI	GTSAC	2 cut(s)	11, 749
NspI	RCATGY	3 cut(s)	130, 482, 701
PaeI	GCATGC	2 cut(s)	130, 482
PagI	TCATGA	1 cut(s)	598
PceI	AGGCCT	1 cut(s)	77
PkrI	GCNGC	3 cut(s)	98, 387, 472
PleI	GAGTC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	8
Psp124BI	GAGCTC	1 cut(s)	177
Psp6I	CCWGG	1 cut(s)	544
PspFI	CCCAGC	1 cut(s)	263
PspGI	CCWGG	1 cut(s)	544
PspN4I	GGNNCC	2 cut(s)	369, 550
PspPI	GGNCC	3 cut(s)	281, 549, 719
RsaI	GTAC	3 cut(s)	7, 68, 357
RsaNI	GTAC	3 cut(s)	6, 67, 356
SacI	GAGCTC	1 cut(s)	177
SaqAI	TTAA	3 cut(s)	143, 255, 330
SatI	GCNGC	3 cut(s)	97, 386, 471
Sau3AI	GATC	1 cut(s)	557
Sau96I	GGNCC	3 cut(s)	281, 549, 719
ScaI	AGTACT	2 cut(s)	7, 68
SchI	GAGTC	1 cut(s)	8
ScrFI	CCNGG	1 cut(s)	546
SduI	GDGCHC	1 cut(s)	177
SfaNI	GCATC	2 cut(s)	389, 667
SmlI	CTYRAG	1 cut(s)	657
SmoI	CTYRAG	1 cut(s)	657
SphI	GCATGC	2 cut(s)	130, 482
Sse9I	AATT	3 cut(s)	145, 327, 562
SseBI	AGGCCT	1 cut(s)	77
SsiI	CCGC	4 cut(s)	83, 97, 385, 473
SspMI	CTAG	6 cut(s)	170, 287, 302, 338, 681, 693
SstI	GAGCTC	1 cut(s)	177
StuI	AGGCCT	1 cut(s)	77
StyD4I	CCNGG	1 cut(s)	544
StyI	CCWWGG	1 cut(s)	440
TaaI	ACNGT	1 cut(s)	580
TaqI	TCGA	2 cut(s)	162, 177
TasI	AATT	3 cut(s)	145, 327, 562
TatI	WGTACW	2 cut(s)	5, 66
TauI	GCSGC	2 cut(s)	99, 388
Tru1I	TTAA	3 cut(s)	143, 255, 330
Tru9I	TTAA	3 cut(s)	143, 255, 330
TscAI	CASTG	1 cut(s)	397
TseFI	GTSAC	2 cut(s)	11, 749
TseI	GCWGC	1 cut(s)	470
Tsp45I	GTSAC	2 cut(s)	11, 749
TspGWI	ACGGA	1 cut(s)	689
TspRI	CASTG	1 cut(s)	397
XapI	RAATTY	2 cut(s)	145, 562
XceI	RCATGY	3 cut(s)	130, 482, 701
XspI	CTAG	6 cut(s)	170, 287, 302, 338, 681, 693
ZrmI	AGTACT	2 cut(s)	7, 68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.