Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003973.1

Orthogroup ID

OG0009644

Physical Location & Seq

Genomic Coordinates Reverse (-)

67476 .. 69773

Gene Structure 2298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003973.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

atgggtagctggcgtcttcctaagagaggggatcatgggacgtgtcgttcactgggagtagaggaagactatatgatggtgcagctggcttttgctgagcacaattgcaaggtctttgcaagtgacatcgcccaacgcatggatgacattgaccttgagtctttggatagttatgacattgacaagctcgagctcgatgtgtcctcagatcaaagcatggaatcggcaatcaacactatcatatccaagtgcggttgcattgatgtagtgatcaacaatgccgggattggaagcaccggtcctctagctgagcttccgctagagactattagaagggcctgggaaattaacacgttgggacaattgaggtttgtccagcaagttgtgccacacatggcatcacggtgcagtggcagcattgtaaatatcaggagcatcgtgggcaaagtgccgaccccttcactagggtcatattgtgcaagcaaggcatatgttgatgcagtgtcaaacactttgagggtggaactgaagccatttgggattgatgtggtgcttgtaatgcctggggcagtaaggtcaaattttgggagtgctaatgttgatagattggcgaatcatgattggaaactttacaaggatttcaaggaggcaattgcagagagagctgctgcttctcaagggggtaaagcaactgagcctagtgtgtttactaggcatgtggcaaagaaggttttgggtcctaaaccaccaaggctaattagttttggtcacatgactggtttgtttgctgtgctttcttgctctccactttgggtgagagatcttttcctttcaactcgtttcaacttaaacaagaagttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000140 GO:0003674 GO:0003824 GO:0004806 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005811 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006644 GO:0006650 GO:0006654 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009056 GO:0009058 GO:0009987 GO:0012505 GO:0016042 GO:0016298 GO:0016491 GO:0016614 GO:0016616 GO:0016787 GO:0016788 GO:0019433 GO:0019637 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046461 GO:0046464 GO:0046473 GO:0046474 GO:0046486 GO:0046503 GO:0052689 GO:0055114 GO:0071704 GO:0090407 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

287

Amino Acids

31.47

Weight (kDa)

8.13

Isoelectric Point (pI)

34.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009644)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18260
malus_domestica	MD02G1189900.v1.1
prunus_persica	Prupe.6G216500_v2.0.a1
pyrus_communis	pycom15g26350
rosa_chinensis	RchiOBHm_Chr2g0108801 RchiOBHm_Chr2g0108811 RchiOBHm_Chr2g0108821
rosa_laevigata	RLG00000017691
rosa_multiflora	Rmu_sc0003973.1_g000018 Rmu_sc0003973.1_g000021
rosa_roxburghii	Rroxscaffold_2G00134790
rosa_rugosa	Rorug02G0156200
rosa_samantha	Rh2AG206400 Rh2AG206500 Rh2BG217700 Rh2CG209400 Rh2CG209500 Rh2CG209600 Rh2DG212700 Rh2DG212800
rosa_wichuraiana	Rw2G016410 Rw2G016420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	139
AciI	CCGC	2 cut(s)	252, 317
AclWI	GGATC	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	580
AcuI	CTGAAG	1 cut(s)	548
AcyI	GRCGYC	1 cut(s)	13
AfiI	CCNNNNNNNGG	3 cut(s)	26, 139, 464
AflIII	ACRYGT	2 cut(s)	41, 351
AgeI	ACCGGT	1 cut(s)	296
AgsI	TTSAA	3 cut(s)	643, 834, 844
AhdI	GACNNNNNGTC	1 cut(s)	157
AjiI	CACGTC	1 cut(s)	42
AjnI	CCWGG	2 cut(s)	338, 562
AloI	GAACNNNNNNTCC	2 cut(s)	31, 63
AluBI	AGCT	7 cut(s)	9, 85, 187, 193, 308, 313, 665
AluI	AGCT	7 cut(s)	9, 85, 187, 193, 308, 313, 665
Alw21I	GWGCWC	2 cut(s)	102, 195
Alw26I	GTCTC	1 cut(s)	317
AlwI	GGATC	1 cut(s)	39
Ama87I	CYCGRG	1 cut(s)	188
AoxI	GGCC	1 cut(s)	336
ApeKI	GCWGC	4 cut(s)	82, 414, 665, 668
ApoI	RAATTY	1 cut(s)	580
AsiGI	ACCGGT	1 cut(s)	296
AspS9I	GGNCC	3 cut(s)	299, 336, 737
AsuC2I	CCSGG	1 cut(s)	283
AsuHPI	GGTGA	1 cut(s)	826
AvaI	CYCGRG	1 cut(s)	188
AvaII	GGWCC	2 cut(s)	299, 737
BanII	GRGCYC	1 cut(s)	195
BbsI	GAAGAC	2 cut(s)	8, 72
Bbv12I	GWGCWC	2 cut(s)	102, 195
BbvI	GCAGC	4 cut(s)	94, 426, 652, 655
BccI	CCATC	1 cut(s)	70
BciT130I	CCWGG	2 cut(s)	340, 564
BclI	TGATCA	1 cut(s)	270
BcnI	CCSGG	1 cut(s)	283
BcoDI	GTCTC	1 cut(s)	317
BfaI	CTAG	5 cut(s)	305, 320, 464, 699, 711
BglII	AGATCT	1 cut(s)	820
BisI	GCNGC	4 cut(s)	83, 415, 666, 669
BlpI	GCTNAGC	2 cut(s)	96, 309
BlsI	GCNGC	4 cut(s)	84, 416, 667, 670
Bme1390I	CCNGG	3 cut(s)	283, 340, 564
Bme18I	GGWCC	2 cut(s)	299, 737
BmeRI	GACNNNNNGTC	1 cut(s)	157
BmeT110I	CYCGRG	1 cut(s)	188
BmgBI	CACGTC	1 cut(s)	42
BmgT120I	GGNCC	3 cut(s)	299, 336, 737
BmiI	GGNNCC	1 cut(s)	738
BmrFI	CCNGG	3 cut(s)	283, 340, 564
BmrI	ACTGGG	1 cut(s)	62
BmsI	GCATC	3 cut(s)	407, 444, 487
BmuI	ACTGGG	1 cut(s)	62
BpiI	GAAGAC	2 cut(s)	8, 72
Bpu1102I	GCTNAGC	2 cut(s)	96, 309
BpuEI	CTTGAG	2 cut(s)	176, 660
BpuMI	CCSGG	1 cut(s)	283
BsaHI	GRCGYC	1 cut(s)	13
BsaJI	CCNNGG	3 cut(s)	339, 563, 749
BsaWI	WCCGGW	1 cut(s)	296
Bsc4I	CCNNNNNNNGG	3 cut(s)	26, 139, 464
Bse118I	RCCGGY	1 cut(s)	296
Bse1I	ACTGG	2 cut(s)	57, 781
BseBI	CCWGG	2 cut(s)	340, 564
BseDI	CCNNGG	3 cut(s)	339, 563, 749
BseGI	GGATG	1 cut(s)	148
BseLI	CCNNNNNNNGG	3 cut(s)	26, 139, 464
BseMII	CTCAG	4 cut(s)	87, 219, 300, 684
BseNI	ACTGG	2 cut(s)	57, 781
BseXI	GCAGC	4 cut(s)	94, 426, 652, 655
BsgI	GTGCAG	2 cut(s)	101, 427
BshFI	GGCC	1 cut(s)	338
BshTI	ACCGGT	1 cut(s)	296
BsiHKAI	GWGCWC	2 cut(s)	102, 195
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	2 cut(s)	282, 297
BslFI	GGGAC	2 cut(s)	52, 372
BslI	CCNNNNNNNGG	3 cut(s)	26, 139, 464
BsmAI	GTCTC	1 cut(s)	317
BsmFI	GGGAC	2 cut(s)	52, 372
BsnI	GGCC	1 cut(s)	338
BsoBI	CYCGRG	1 cut(s)	188
Bsp1286I	GDGCHC	2 cut(s)	102, 195
Bsp143I	GATC	4 cut(s)	31, 208, 270, 820
Bsp1720I	GCTNAGC	2 cut(s)	96, 309
BspACI	CCGC	2 cut(s)	252, 317
BspANI	GGCC	1 cut(s)	338
BspCNI	CTCAG	4 cut(s)	88, 218, 301, 685
BspHI	TCATGA	1 cut(s)	616
BspLI	GGNNCC	1 cut(s)	738
BspPI	GGATC	1 cut(s)	39
BsrFI	RCCGGY	1 cut(s)	296
BsrI	ACTGG	2 cut(s)	57, 781
BssAI	RCCGGY	1 cut(s)	296
BssECI	CCNNGG	3 cut(s)	339, 563, 749
BssMI	GATC	4 cut(s)	31, 208, 270, 820
BssNI	GRCGYC	1 cut(s)	13
BssT1I	CCWWGG	1 cut(s)	749
Bst2UI	CCWGG	2 cut(s)	340, 564
Bst4CI	ACNGT	1 cut(s)	405
BstACI	GRCGYC	1 cut(s)	13
BstAPI	GCANNNNNTGC	1 cut(s)	385
BstC8I	GCNNGC	3 cut(s)	11, 87, 481
BstDEI	CTNAG	5 cut(s)	21, 96, 205, 309, 693
BstENI	CCTNNNNNAGG	2 cut(s)	24, 462
BstF5I	GGATG	1 cut(s)	148
BstKTI	GATC	4 cut(s)	34, 211, 273, 823
BstMAI	GTCTC	1 cut(s)	317
BstMBI	GATC	4 cut(s)	31, 208, 270, 820
BstMWI	GCNNNNNNNGC	6 cut(s)	385, 414, 441, 485, 559, 662
BstNI	CCWGG	2 cut(s)	340, 564
BstNSI	RCATGY	1 cut(s)	719
BstSCI	CCNGG	3 cut(s)	281, 338, 562
BstV1I	GCAGC	4 cut(s)	94, 426, 652, 655
BstV2I	GAAGAC	2 cut(s)	8, 72
BstX2I	RGATCY	1 cut(s)	820
BstYI	RGATCY	1 cut(s)	820
BsuRI	GGCC	1 cut(s)	338
BtgZI	GCGATG	1 cut(s)	112
BtrI	CACGTC	1 cut(s)	42
BtsCI	GGATG	1 cut(s)	148
BtsI	GCAGTG	2 cut(s)	415, 507
BtsIMutI	CAGTG	3 cut(s)	50, 415, 507
Cac8I	GCNNGC	3 cut(s)	11, 87, 481
CciI	TCATGA	1 cut(s)	616
Cfr10I	RCCGGY	1 cut(s)	296
Cfr13I	GGNCC	3 cut(s)	299, 336, 737
CseI	GACGC	1 cut(s)	2
CspAI	ACCGGT	1 cut(s)	296
CviAII	CATG	7 cut(s)	35, 139, 217, 394, 617, 716, 772
DdeI	CTNAG	5 cut(s)	21, 96, 205, 309, 693
DpnI	GATC	4 cut(s)	33, 210, 272, 822
DpnII	GATC	4 cut(s)	31, 208, 270, 820
DriI	GACNNNNNGTC	1 cut(s)	157
Eam1105I	GACNNNNNGTC	1 cut(s)	157
Ecl136II	GAGCTC	1 cut(s)	193
Eco130I	CCWWGG	1 cut(s)	749
Eco24I	GRGCYC	1 cut(s)	195
Eco47I	GGWCC	2 cut(s)	299, 737
Eco53kI	GAGCTC	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	548
Eco88I	CYCGRG	1 cut(s)	188
EcoICRI	GAGCTC	1 cut(s)	193
EcoNI	CCTNNNNNAGG	2 cut(s)	24, 462
EcoO109I	RGGNCCY	2 cut(s)	336, 737
EcoRII	CCWGG	2 cut(s)	338, 562
EcoT14I	CCWWGG	1 cut(s)	749
EcoT38I	GRGCYC	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	749
FaeI	CATG	7 cut(s)	38, 142, 220, 397, 620, 719, 775
FaqI	GGGAC	2 cut(s)	52, 372
FatI	CATG	7 cut(s)	34, 138, 216, 393, 616, 715, 771
FauNDI	CATATG	1 cut(s)	490
FbaI	TGATCA	1 cut(s)	270
Fnu4HI	GCNGC	4 cut(s)	83, 415, 666, 669
FokI	GGATG	1 cut(s)	155
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	4 cut(s)	83, 415, 666, 669
FspBI	CTAG	5 cut(s)	305, 320, 464, 699, 711
GluI	GCNGC	4 cut(s)	83, 415, 666, 669
HaeIII	GGCC	1 cut(s)	338
HapII	CCGG	2 cut(s)	282, 297
HgaI	GACGC	1 cut(s)	2
Hin1I	GRCGYC	1 cut(s)	13
Hin1II	CATG	7 cut(s)	38, 142, 220, 397, 620, 719, 775
HinfI	GANTC	3 cut(s)	158, 221, 613
HpaII	CCGG	2 cut(s)	282, 297
HphI	GGTGA	1 cut(s)	826
Hpy166II	GTNNAC	2 cut(s)	50, 708
Hpy188I	TCNGA	1 cut(s)	208
Hpy188III	TCNNGA	2 cut(s)	430, 617
Hpy8I	GTNNAC	2 cut(s)	50, 708
HpyAV	CCTTC	3 cut(s)	327, 468, 721
HpyCH4III	ACNGT	1 cut(s)	405
HpyCH4IV	ACGT	2 cut(s)	41, 353
HpyCH4V	TGCA	8 cut(s)	82, 108, 119, 258, 408, 479, 500, 656
HpyF10VI	GCNNNNNNNGC	6 cut(s)	385, 414, 441, 485, 559, 662
HpyF3I	CTNAG	5 cut(s)	21, 96, 205, 309, 693
HpySE526I	ACGT	2 cut(s)	41, 353
Hsp92I	GRCGYC	1 cut(s)	13
Hsp92II	CATG	7 cut(s)	38, 142, 220, 397, 620, 719, 775
Ksp22I	TGATCA	1 cut(s)	270
Kzo9I	GATC	4 cut(s)	31, 208, 270, 820
LmnI	GCTCC	1 cut(s)	432
Lsp1109I	GCAGC	4 cut(s)	94, 426, 652, 655
LweI	GCATC	3 cut(s)	407, 444, 487
MaeI	CTAG	5 cut(s)	305, 320, 464, 699, 711
MaeII	ACGT	2 cut(s)	41, 353
MaeIII	GTNAC	2 cut(s)	122, 767
MalI	GATC	4 cut(s)	33, 210, 272, 822
MboI	GATC	4 cut(s)	31, 208, 270, 820
MboII	GAAGA	2 cut(s)	8, 77
MfeI	CAATTG	3 cut(s)	103, 362, 651
MflI	RGATCY	1 cut(s)	820
MhlI	GDGCHC	2 cut(s)	102, 195
MluCI	AATT	6 cut(s)	103, 345, 362, 580, 651, 756
MlyI	GAGTC	1 cut(s)	167
MnlI	CCTC	7 cut(s)	20, 55, 214, 312, 360, 510, 640
MseI	TTAA	2 cut(s)	348, 848
MslI	CAYNNNNRTG	1 cut(s)	403
MspA1I	CMGCKG	1 cut(s)	85
MspI	CCGG	2 cut(s)	282, 297
MspR9I	CCNGG	3 cut(s)	283, 340, 564
MunI	CAATTG	3 cut(s)	103, 362, 651
MvaI	CCWGG	2 cut(s)	340, 564
MwoI	GCNNNNNNNGC	6 cut(s)	385, 414, 441, 485, 559, 662
NciI	CCSGG	1 cut(s)	283
NdeI	CATATG	1 cut(s)	490
NdeII	GATC	4 cut(s)	31, 208, 270, 820
NlaIII	CATG	7 cut(s)	38, 142, 220, 397, 620, 719, 775
NlaIV	GGNNCC	1 cut(s)	738
NmuCI	GTSAC	2 cut(s)	122, 767
NspI	RCATGY	1 cut(s)	719
PaeR7I	CTCGAG	1 cut(s)	188
PagI	TCATGA	1 cut(s)	616
PfeI	GAWTC	2 cut(s)	221, 613
PflMI	CCANNNNNTGG	1 cut(s)	139
PinAI	ACCGGT	1 cut(s)	296
PkrI	GCNGC	4 cut(s)	84, 416, 667, 670
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
PpuMI	RGGWCCY	1 cut(s)	737
Psp124BI	GAGCTC	1 cut(s)	195
Psp5II	RGGWCCY	1 cut(s)	737
Psp6I	CCWGG	2 cut(s)	338, 562
PspGI	CCWGG	2 cut(s)	338, 562
PspN4I	GGNNCC	1 cut(s)	738
PspPI	GGNCC	3 cut(s)	299, 336, 737
PspPPI	RGGWCCY	1 cut(s)	737
PspXI	VCTCGAGB	1 cut(s)	188
PsuI	RGATCY	1 cut(s)	820
PvuII	CAGCTG	1 cut(s)	85
RseI	CAYNNNNRTG	1 cut(s)	403
SacI	GAGCTC	1 cut(s)	195
SaqAI	TTAA	2 cut(s)	348, 848
SatI	GCNGC	4 cut(s)	83, 415, 666, 669
Sau3AI	GATC	4 cut(s)	31, 208, 270, 820
Sau96I	GGNCC	3 cut(s)	299, 336, 737
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	3 cut(s)	283, 340, 564
SduI	GDGCHC	2 cut(s)	102, 195
SfaNI	GCATC	3 cut(s)	407, 444, 487
Sfr274I	CTCGAG	1 cut(s)	188
SinI	GGWCC	2 cut(s)	299, 737
SlaI	CTCGAG	1 cut(s)	188
SmiMI	CAYNNNNRTG	1 cut(s)	403
SmlI	CTYRAG	3 cut(s)	155, 188, 675
SmoI	CTYRAG	3 cut(s)	155, 188, 675
Sse9I	AATT	6 cut(s)	103, 345, 362, 580, 651, 756
SsiI	CCGC	2 cut(s)	252, 317
SspMI	CTAG	5 cut(s)	305, 320, 464, 699, 711
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	3 cut(s)	281, 338, 562
StyI	CCWWGG	1 cut(s)	749
TaaI	ACNGT	1 cut(s)	405
TaiI	ACGT	2 cut(s)	44, 356
TaqI	TCGA	2 cut(s)	189, 195
TasI	AATT	6 cut(s)	103, 345, 362, 580, 651, 756
TfiI	GAWTC	2 cut(s)	221, 613
Tru1I	TTAA	2 cut(s)	348, 848
Tru9I	TTAA	2 cut(s)	348, 848
TscAI	CASTG	3 cut(s)	57, 415, 507
TseFI	GTSAC	2 cut(s)	122, 767
TseI	GCWGC	4 cut(s)	82, 414, 665, 668
Tsp45I	GTSAC	2 cut(s)	122, 767
TspRI	CASTG	3 cut(s)	57, 415, 507
Van91I	CCANNNNNTGG	1 cut(s)	139
VpaK11BI	GGWCC	2 cut(s)	299, 737
XagI	CCTNNNNNAGG	2 cut(s)	24, 462
XapI	RAATTY	1 cut(s)	580
XceI	RCATGY	1 cut(s)	719
XhoI	CTCGAG	1 cut(s)	188
XspI	CTAG	5 cut(s)	305, 320, 464, 699, 711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.