Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009644

Physical Location & Seq

Genomic Coordinates Forward (+)

13915798 .. 13917657

Gene Structure 1860 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0156200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1683 bp

ATGATGGAGTGCTCTATACTTGTTTTCGTACTTTTCTTGCTATTCACTCCAAAGCTCAAAGCTCAACAAAGCTATGCCGGAAACTCGGTTCTGGACTGTAATAACACTGATGATGCAGGGCCATCCGCGGCTTTTCTTTACACCTGCAATGGTCAGAAGCAGTCCTGCAAGTCCTTCTTGATCTTCAAGTCTCAACCTCCTTACAATTCGCTCTCCGCCATCTCAAACCTCACATCTTCAGACCCATCTGAGCTTGCCCGAATCAACATGATCTCCGACAACACACAGTTGTTGCCTCCAGGCAAAGAGGTGATTGTTCCAGTGGTACCACTTAGGTGTGCTTGTCCCACAAGAAACCAAACTTTGAATGGTACTAAATTTCTGCTGACTTACTTGGTCAGCTGGGATGACTCTGTCTCCGAAGTTAGTGAGAGATTTAATGTCAGTGAAAAGAGCGTCCTACTTGCCAATTGGTTTACAGAAGATGATCCTACTGTGTTTGACTTTACAACAATTCTTATTCCACTTCCAGTAGAGCCTTCAAGCTCTCAAACCCGAATCCACTACCCACCGCCACTGAAATCTCCTCCGGTTAGTCTCATTCATGGAAAGGCAAGGTCAAGGAAAGTATATGTTTGGATAGCAGGAATTGGAGTTCTTGTACTAGTCCTTTGCTTGATTATCTTTGTGGTCGTTTTCTATTGCCGGAAAAAGGGTTGTCAAAAGAATACTGAAGGGAAATCCAAAAAGAAATTAGATTTGCAAGAAGAATTATATGTCTCCATTGCTAAAGCTGATGCAGGTTTGAAACTCTATAGATATGAAGAATTGGAAAGTGCTACAGAGGATTTCAGCAACAAGAACTGGTTGGGTGGCTCTGTTTATAGTGGTTTTCTCAAAGGAAATGTGCTAGTAGCCATAAAAAAGATGACCAAAGATGTGAGTGAGGAGGTGAAGTTACTGCAAAAGATCAACCACTTCAATCTAATAAGTCTTTTGGGTGCGTGCGAACACTGTAAGGATTTCTACCTTGTTTATGAGTTCATGGAGAATGGTTCATTAAGAGATTGGCTAAGTTGTCCCCAAGTTTTGGGATGGAAGCACAGGGTTCAGATTGCTTTGGACATTGCCAATGGGCTTCACTATCTTCACAACTTCACCAGTCCTGCCTATGTGCACAAGGATATTAAAAGTACCAATGTACTTCTCAATAGAGATTTAAGGGCAAAGATTGCAAATTTTAGTCTCGCAAGATCAGCGGAGAAGGAAACATATGGCTTTTCATCTCGGAAGTTTGCACAGGTATCAAAAGGCTACATGGCACCAGAATATATAGAATATGGCTTGGTGACACCTGCAATGGATGTATATGCTTTTGGGGTTATTATGCTGGAATTAGTAACAGGAAAAGAAGCTGTTTTTACTGAGGATGGAGTTGAAGTATTTCTTTCAGAAGTTATATTTTCAGTAATGGAAGAAGGAATTGGAGAAGTTGAGCCTGTTGGACTAGTAGATCCCACTTTGAATGTAGAGCACTTGATGGAGTTTGCAGTGAGATGGATAAAGTTAAGTCTAGTCTGCTTGGCTGAAGAACCAGAAGACAGACCCAGAATGCCTCAAGTACTCTCATCTGTGCTGAAAATACAATTGGATGCAAACAGGAAAATGCAGACTTCTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000140 GO:0003674 GO:0003824 GO:0004806 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005811 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006644 GO:0006650 GO:0006654 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009056 GO:0009058 GO:0009987 GO:0012505 GO:0016042 GO:0016298 GO:0016491 GO:0016614 GO:0016616 GO:0016787 GO:0016788 GO:0019433 GO:0019637 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046461 GO:0046464 GO:0046473 GO:0046474 GO:0046486 GO:0046503 GO:0052689 GO:0055114 GO:0071704 GO:0090407 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

560

Amino Acids

62.76

Weight (kDa)

6.21

Isoelectric Point (pI)

43.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LysM1_NFP_LYK	PF23446	55 - 115	3.1e-15	NFP/LYK LysM1 domain
LysM3_LYK4_5	PF23473	127 - 176	2.5e-18	LYK4/5 LysM3 domain
PK_Tyr_Ser-Thr	PF07714	292 - 543	3.4e-39	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	292 - 543	1.6e-36	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0009644)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18260
malus_domestica	MD02G1189900.v1.1
prunus_persica	Prupe.6G216500_v2.0.a1
pyrus_communis	pycom15g26350
rosa_chinensis	RchiOBHm_Chr2g0108801 RchiOBHm_Chr2g0108811 RchiOBHm_Chr2g0108821
rosa_laevigata	RLG00000017691
rosa_multiflora	Rmu_sc0003973.1_g000018 Rmu_sc0003973.1_g000021
rosa_roxburghii	Rroxscaffold_2G00134790
rosa_rugosa	Rorug02G0156200
rosa_samantha	Rh2AG206400 Rh2AG206500 Rh2BG217700 Rh2CG209400 Rh2CG209500 Rh2CG209600 Rh2DG212700 Rh2DG212800
rosa_wichuraiana	Rw2G016410 Rw2G016420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	152, 1363
Acc36I	ACCTGC	3 cut(s)	152, 791, 1363
Acc65I	GGTACC	1 cut(s)	325
AccB1I	GGYRCC	2 cut(s)	325, 1321
AccB7I	CCANNNNNTGG	1 cut(s)	1090
AccII	CGCG	1 cut(s)	128
AciI	CCGC	5 cut(s)	126, 128, 216, 572, 1259
AclWI	GGATC	2 cut(s)	482, 1508
AcsI	RAATTY	2 cut(s)	377, 1237
AcuI	CTGAAG	3 cut(s)	222, 753, 1608
AfaI	GTAC	7 cut(s)	30, 327, 373, 663, 1195, 1203, 1623
AfiI	CCNNNNNNNGG	2 cut(s)	712, 1090
AgsI	TTSAA	7 cut(s)	187, 367, 543, 808, 982, 1439, 1525
AhlI	ACTAGT	2 cut(s)	664, 1507
AjnI	CCWGG	1 cut(s)	298
AjuI	GAANNNNNNNTTGG	4 cut(s)	1467, 1499, 1631, 1663
AleI	CACNNNNGTG	1 cut(s)	334
AloI	GAACNNNNNNTCC	4 cut(s)	72, 104, 639, 671
AluBI	AGCT	8 cut(s)	55, 62, 72, 253, 402, 546, 794, 1415
AluI	AGCT	8 cut(s)	55, 62, 72, 253, 402, 546, 794, 1415
Alw21I	GWGCWC	3 cut(s)	14, 1179, 1536
Alw26I	GTCTC	5 cut(s)	195, 421, 602, 784, 1250
Alw44I	GTGCAC	1 cut(s)	1175
AlwI	GGATC	2 cut(s)	482, 1508
AoxI	GGCC	1 cut(s)	119
ApaLI	GTGCAC	1 cut(s)	1175
ApoI	RAATTY	2 cut(s)	377, 1237
Asp700I	GAANNNNTTC	1 cut(s)	1443
Asp718I	GGTACC	1 cut(s)	325
AspS9I	GGNCC	1 cut(s)	119
AsuHPI	GGTGA	4 cut(s)	322, 964, 1150, 1360
BaeGI	GKGCMC	1 cut(s)	1179
BanI	GGYRCC	2 cut(s)	325, 1321
BbsI	GAAGAC	1 cut(s)	1605
Bbv12I	GWGCWC	3 cut(s)	14, 1179, 1536
BccI	CCATC	7 cut(s)	130, 227, 253, 1089, 1424, 1534, 1551
BciT130I	CCWGG	1 cut(s)	300
BcoDI	GTCTC	5 cut(s)	195, 421, 602, 784, 1250
BcuI	ACTAGT	2 cut(s)	664, 1507
BfaI	CTAG	4 cut(s)	665, 911, 1508, 1574
BfmI	CTRYAG	2 cut(s)	814, 840
BfuAI	ACCTGC	3 cut(s)	152, 791, 1363
BisI	GCNGC	1 cut(s)	129
BlsI	GCNGC	1 cut(s)	130
BmcAI	AGTACT	1 cut(s)	1623
Bme1390I	CCNGG	1 cut(s)	300
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	2 cut(s)	327, 1323
BmrFI	CCNGG	1 cut(s)	300
BmsI	GCATC	3 cut(s)	103, 787, 1642
BpiI	GAAGAC	1 cut(s)	1605
BpmI	CTGGAG	1 cut(s)	282
BpuEI	CTTGAG	1 cut(s)	1602
BsaJI	CCNNGG	1 cut(s)	126
BsaWI	WCCGGW	1 cut(s)	589
Bsc4I	CCNNNNNNNGG	2 cut(s)	712, 1090
Bse1I	ACTGG	4 cut(s)	320, 530, 869, 1161
Bse3DI	GCAATG	4 cut(s)	154, 783, 1125, 1365
BseBI	CCWGG	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	126
BseGI	GGATG	6 cut(s)	122, 412, 1100, 1369, 1435, 1657
BseLI	CCNNNNNNNGG	2 cut(s)	712, 1090
BseMI	GCAATG	4 cut(s)	154, 783, 1125, 1365
BseMII	CTCAG	2 cut(s)	240, 1416
BseNI	ACTGG	4 cut(s)	320, 530, 869, 1161
BseRI	GAGGAG	2 cut(s)	576, 962
BseSI	GKGCMC	1 cut(s)	1179
BseYI	CCCAGC	1 cut(s)	402
Bsh1236I	CGCG	1 cut(s)	128
BshFI	GGCC	1 cut(s)	121
BshNI	GGYRCC	2 cut(s)	325, 1321
BsiHKAI	GWGCWC	3 cut(s)	14, 1179, 1536
BsiSI	CCGG	3 cut(s)	78, 590, 706
BslFI	GGGAC	2 cut(s)	330, 1065
BslI	CCNNNNNNNGG	2 cut(s)	712, 1090
BsmAI	GTCTC	5 cut(s)	195, 421, 602, 784, 1250
BsmFI	GGGAC	2 cut(s)	330, 1065
BsmI	GAATGC	1 cut(s)	1617
BsnI	GGCC	1 cut(s)	121
Bsp1286I	GDGCHC	3 cut(s)	14, 1179, 1536
Bsp143I	GATC	6 cut(s)	180, 270, 487, 969, 1253, 1513
BspACI	CCGC	5 cut(s)	126, 128, 216, 572, 1259
BspANI	GGCC	1 cut(s)	121
BspCNI	CTCAG	2 cut(s)	241, 1417
BspFNI	CGCG	1 cut(s)	128
BspLI	GGNNCC	2 cut(s)	327, 1323
BspMI	ACCTGC	3 cut(s)	152, 791, 1363
BspPI	GGATC	2 cut(s)	482, 1508
BspT107I	GGYRCC	2 cut(s)	325, 1321
BsrDI	GCAATG	4 cut(s)	154, 783, 1125, 1365
BsrI	ACTGG	4 cut(s)	320, 530, 869, 1161
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	6 cut(s)	180, 270, 487, 969, 1253, 1513
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	4 cut(s)	98, 288, 496, 1016
BstAPI	GCANNNNNTGC	1 cut(s)	1232
BstC8I	GCNNGC	2 cut(s)	255, 1006
BstDEI	CTNAG	4 cut(s)	249, 332, 1073, 1425
BstDSI	CCRYGG	1 cut(s)	126
BstF5I	GGATG	6 cut(s)	122, 412, 1100, 1369, 1435, 1657
BstFNI	CGCG	1 cut(s)	128
BstKTI	GATC	6 cut(s)	183, 273, 490, 972, 1256, 1516
BstMAI	GTCTC	5 cut(s)	195, 421, 602, 784, 1250
BstMBI	GATC	6 cut(s)	180, 270, 487, 969, 1253, 1513
BstMWI	GCNNNNNNNGC	2 cut(s)	1232, 1256
BstNI	CCWGG	1 cut(s)	300
BstSCI	CCNGG	1 cut(s)	298
BstSFI	CTRYAG	2 cut(s)	814, 840
BstSLI	GKGCMC	1 cut(s)	1179
BstUI	CGCG	1 cut(s)	128
BstV2I	GAAGAC	1 cut(s)	1605
BstX2I	RGATCY	1 cut(s)	1513
BstYI	RGATCY	1 cut(s)	1513
BsuRI	GGCC	1 cut(s)	121
BtgI	CCRYGG	1 cut(s)	126
BtsCI	GGATG	6 cut(s)	122, 412, 1100, 1369, 1435, 1657
BtsI	GCAGTG	1 cut(s)	1557
BtsIMutI	CAGTG	6 cut(s)	105, 327, 451, 575, 1012, 1557
BveI	ACCTGC	3 cut(s)	152, 791, 1363
Cac8I	GCNNGC	2 cut(s)	255, 1006
Cfr13I	GGNCC	1 cut(s)	119
Cfr42I	CCGCGG	1 cut(s)	129
CseI	GACGC	1 cut(s)	445
Csp6I	GTAC	7 cut(s)	29, 326, 372, 662, 1194, 1202, 1622
CviAII	CATG	4 cut(s)	268, 605, 1045, 1318
CviQI	GTAC	7 cut(s)	29, 326, 372, 662, 1194, 1202, 1622
DdeI	CTNAG	4 cut(s)	249, 332, 1073, 1425
DpnI	GATC	6 cut(s)	182, 272, 489, 971, 1255, 1515
DpnII	GATC	6 cut(s)	180, 270, 487, 969, 1253, 1513
EciI	GGCGGA	1 cut(s)	205
Eco57I	CTGAAG	3 cut(s)	222, 753, 1608
EcoRII	CCWGG	1 cut(s)	298
FaeI	CATG	4 cut(s)	271, 608, 1048, 1321
FalI	AAGNNNNNCTT	4 cut(s)	161, 193, 1431, 1463
FaqI	GGGAC	2 cut(s)	330, 1065
FatI	CATG	4 cut(s)	267, 604, 1044, 1317
FauNDI	CATATG	1 cut(s)	1273
Fnu4HI	GCNGC	1 cut(s)	129
FokI	GGATG	6 cut(s)	109, 419, 1107, 1376, 1442, 1664
Fsp4HI	GCNGC	1 cut(s)	129
FspBI	CTAG	4 cut(s)	665, 911, 1508, 1574
GluI	GCNGC	1 cut(s)	129
GsaI	CCCAGC	1 cut(s)	406
GsuI	CTGGAG	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	121
HapII	CCGG	3 cut(s)	78, 590, 706
HgaI	GACGC	1 cut(s)	445
Hin1II	CATG	4 cut(s)	271, 608, 1048, 1321
HinfI	GANTC	3 cut(s)	261, 410, 558
HpaII	CCGG	3 cut(s)	78, 590, 706
HphI	GGTGA	4 cut(s)	322, 964, 1150, 1360
Hpy166II	GTNNAC	2 cut(s)	477, 1177
Hpy188I	TCNGA	8 cut(s)	156, 241, 250, 277, 421, 1113, 1290, 1453
Hpy188III	TCNNGA	2 cut(s)	92, 178
Hpy8I	GTNNAC	2 cut(s)	477, 1177
HpyAV	CCTTC	5 cut(s)	184, 549, 728, 1258, 1472
HpyCH4III	ACNGT	4 cut(s)	98, 288, 496, 1016
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1232, 1256
HpyF3I	CTNAG	4 cut(s)	249, 332, 1073, 1425
Hsp92II	CATG	4 cut(s)	271, 608, 1048, 1321
KpnI	GGTACC	1 cut(s)	329
KspI	CCGCGG	1 cut(s)	129
Kzo9I	GATC	6 cut(s)	180, 270, 487, 969, 1253, 1513
LweI	GCATC	3 cut(s)	103, 787, 1642
MaeI	CTAG	4 cut(s)	665, 911, 1508, 1574
MaeIII	GTNAC	3 cut(s)	957, 1348, 1399
MalI	GATC	6 cut(s)	182, 272, 489, 971, 1255, 1515
MboI	GATC	6 cut(s)	180, 270, 487, 969, 1253, 1513
MboII	GAAGA	9 cut(s)	175, 228, 494, 779, 836, 1139, 1487, 1601, 1610
MfeI	CAATTG	2 cut(s)	469, 1646
MflI	RGATCY	1 cut(s)	1513
MhlI	GDGCHC	3 cut(s)	14, 1179, 1536
MlyI	GAGTC	1 cut(s)	404
MmeI	TCCRAC	2 cut(s)	300, 1483
MroXI	GAANNNNTTC	1 cut(s)	1443
MseI	TTAA	5 cut(s)	438, 1061, 1188, 1220, 1568
MslI	CAYNNNNRTG	1 cut(s)	334
MspA1I	CMGCKG	3 cut(s)	128, 402, 1259
MspI	CCGG	3 cut(s)	78, 590, 706
MspR9I	CCNGG	1 cut(s)	300
MunI	CAATTG	2 cut(s)	469, 1646
Mva1269I	GAATGC	1 cut(s)	1617
MvaI	CCWGG	1 cut(s)	300
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	2 cut(s)	1232, 1256
NdeI	CATATG	1 cut(s)	1273
NdeII	GATC	6 cut(s)	180, 270, 487, 969, 1253, 1513
NlaIII	CATG	4 cut(s)	271, 608, 1048, 1321
NlaIV	GGNNCC	2 cut(s)	327, 1323
NmuCI	GTSAC	1 cut(s)	1348
OliI	CACNNNNGTG	1 cut(s)	334
PaqCI	CACCTGC	2 cut(s)	152, 1363
PctI	GAATGC	1 cut(s)	1617
PdmI	GAANNNNTTC	1 cut(s)	1443
PfeI	GAWTC	2 cut(s)	261, 558
PflFI	GACNNNGTC	1 cut(s)	413
PflMI	CCANNNNNTGG	1 cut(s)	1090
PkrI	GCNGC	1 cut(s)	130
PleI	GAGTC	1 cut(s)	404
PpsI	GAGTC	1 cut(s)	404
Psp6I	CCWGG	1 cut(s)	298
PspFI	CCCAGC	1 cut(s)	402
PspGI	CCWGG	1 cut(s)	298
PspN4I	GGNNCC	2 cut(s)	327, 1323
PspPI	GGNCC	1 cut(s)	119
PsuI	RGATCY	1 cut(s)	1513
PsyI	GACNNNGTC	1 cut(s)	413
PvuII	CAGCTG	1 cut(s)	402
RsaI	GTAC	7 cut(s)	30, 327, 373, 663, 1195, 1203, 1623
RsaNI	GTAC	7 cut(s)	29, 326, 372, 662, 1194, 1202, 1622
RseI	CAYNNNNRTG	1 cut(s)	334
SacII	CCGCGG	1 cut(s)	129
SaqAI	TTAA	5 cut(s)	438, 1061, 1188, 1220, 1568
SatI	GCNGC	1 cut(s)	129
Sau3AI	GATC	6 cut(s)	180, 270, 487, 969, 1253, 1513
Sau96I	GGNCC	1 cut(s)	119
ScaI	AGTACT	1 cut(s)	1623
SchI	GAGTC	1 cut(s)	404
ScrFI	CCNGG	1 cut(s)	300
SduI	GDGCHC	3 cut(s)	14, 1179, 1536
SfaNI	GCATC	3 cut(s)	103, 787, 1642
SfcI	CTRYAG	2 cut(s)	814, 840
Sfr303I	CCGCGG	1 cut(s)	129
SgrBI	CCGCGG	1 cut(s)	129
SmiMI	CAYNNNNRTG	1 cut(s)	334
SmlI	CTYRAG	1 cut(s)	1617
SmoI	CTYRAG	1 cut(s)	1617
SpeI	ACTAGT	2 cut(s)	664, 1507
SsiI	CCGC	5 cut(s)	126, 128, 216, 572, 1259
SspMI	CTAG	4 cut(s)	665, 911, 1508, 1574
StyD4I	CCNGG	1 cut(s)	298
TaaI	ACNGT	4 cut(s)	98, 288, 496, 1016
TatI	WGTACW	3 cut(s)	661, 1201, 1621
TauI	GCSGC	1 cut(s)	131
TfiI	GAWTC	2 cut(s)	261, 558
Tru1I	TTAA	5 cut(s)	438, 1061, 1188, 1220, 1568
Tru9I	TTAA	5 cut(s)	438, 1061, 1188, 1220, 1568
TscAI	CASTG	6 cut(s)	112, 327, 451, 582, 1019, 1557
TseFI	GTSAC	1 cut(s)	1348
Tsp45I	GTSAC	1 cut(s)	1348
TspDTI	ATGAA	5 cut(s)	593, 837, 1033, 1047, 1272
TspRI	CASTG	6 cut(s)	112, 327, 451, 582, 1019, 1557
Tth111I	GACNNNGTC	1 cut(s)	413
Van91I	CCANNNNNTGG	1 cut(s)	1090
VneI	GTGCAC	1 cut(s)	1175
XapI	RAATTY	2 cut(s)	377, 1237
XcmI	CCANNNNNNNNNTGG	1 cut(s)	365
XmnI	GAANNNNTTC	1 cut(s)	1443
XspI	CTAG	4 cut(s)	665, 911, 1508, 1574
ZrmI	AGTACT	1 cut(s)	1623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.