Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003973.1

Orthogroup ID

OG0009644

Physical Location & Seq

Genomic Coordinates Reverse (-)

81233 .. 82246

Gene Structure 1014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003973.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

atgagtgactctaaggttgttctagtcacaggttgtgccagaggcgggatcggttacgagtactgcaaagcttttgctgagcacaattgcaaggtctttgcaagtgacatcgcccaacgcatggatgacattgaccttgagtctttggatagttatgacattgacaagctcgagctcgatgtgtcctcagatcaaagcgtggaatcggcaatcaacactatcatatccaagtgcggtcgcattgatgtagtgatcaacaatgccgggattggaagcaccggtcctctagctgagcttccgctagagactattagaagggcatgggaaattaacacgttgggacaattgaggttggtccagcaagtggcatatgttgatgccgtgtcaaacactttgagggtggaactgaagccatttgggattgatgtggtgcttgtaatgcctggggcagtaaggtcaaattttgggagtgctaatgttgatagattggcgaatcatgattggaaactttacaaggatttcaaggaggcaattgcagagagagctgctgcttctcaagggggtaaagcaactgagcctagtgtgtttactaggcatgtggcaaagaaggttttgggtcctaaaccaccaaggctaattagttttggtcacatgactggtttgtttgctgtgctttcttgctctccactttggaacctcatgtcgacgttacggcagcttttggtgaaagaaatttcgggtgttagggttggcggcagctttttgggttttagggctagggttagggctcgtgctgataacgtgttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000140 GO:0003674 GO:0003824 GO:0004806 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005811 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006644 GO:0006650 GO:0006654 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009056 GO:0009058 GO:0009987 GO:0012505 GO:0016042 GO:0016298 GO:0016491 GO:0016614 GO:0016616 GO:0016787 GO:0016788 GO:0019433 GO:0019637 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046461 GO:0046464 GO:0046473 GO:0046474 GO:0046486 GO:0046503 GO:0052689 GO:0055114 GO:0071704 GO:0090407 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

269

Amino Acids

29.3

Weight (kDa)

8.24

Isoelectric Point (pI)

29.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009644)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18260
malus_domestica	MD02G1189900.v1.1
prunus_persica	Prupe.6G216500_v2.0.a1
pyrus_communis	pycom15g26350
rosa_chinensis	RchiOBHm_Chr2g0108801 RchiOBHm_Chr2g0108811 RchiOBHm_Chr2g0108821
rosa_laevigata	RLG00000017691
rosa_multiflora	Rmu_sc0003973.1_g000018 Rmu_sc0003973.1_g000021
rosa_roxburghii	Rroxscaffold_2G00134790
rosa_rugosa	Rorug02G0156200
rosa_samantha	Rh2AG206400 Rh2AG206500 Rh2BG217700 Rh2CG209400 Rh2CG209500 Rh2CG209600 Rh2DG212700 Rh2DG212800
rosa_wichuraiana	Rw2G016410 Rw2G016420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	121, 364
AccI	GTMKAC	1 cut(s)	704
AciI	CCGC	4 cut(s)	45, 234, 299, 753
AclWI	GGATC	1 cut(s)	56
AcsI	RAATTY	2 cut(s)	460, 732
AcuI	CTGAAG	1 cut(s)	428
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	3 cut(s)	45, 121, 364
AflIII	ACRYGT	2 cut(s)	333, 801
AgeI	ACCGGT	1 cut(s)	278
AgsI	TTSAA	1 cut(s)	523
AhdI	GACNNNNNGTC	1 cut(s)	139
AjnI	CCWGG	1 cut(s)	442
AluBI	AGCT	8 cut(s)	71, 169, 175, 290, 295, 545, 718, 759
AluI	AGCT	8 cut(s)	71, 169, 175, 290, 295, 545, 718, 759
Alw21I	GWGCWC	2 cut(s)	84, 177
Alw26I	GTCTC	1 cut(s)	299
AlwI	GGATC	1 cut(s)	56
Ama87I	CYCGRG	1 cut(s)	170
ApeKI	GCWGC	4 cut(s)	545, 548, 715, 756
ApoI	RAATTY	2 cut(s)	460, 732
AsiGI	ACCGGT	1 cut(s)	278
AspS9I	GGNCC	3 cut(s)	281, 355, 617
AsuC2I	CCSGG	1 cut(s)	265
AsuHPI	GGTGA	1 cut(s)	736
AvaI	CYCGRG	1 cut(s)	170
AvaII	GGWCC	3 cut(s)	281, 355, 617
BanII	GRGCYC	2 cut(s)	177, 790
BauI	CACGAG	1 cut(s)	789
Bbv12I	GWGCWC	2 cut(s)	84, 177
BbvI	GCAGC	4 cut(s)	532, 535, 727, 768
BceAI	ACGGC	2 cut(s)	365, 728
BciT130I	CCWGG	1 cut(s)	444
BclI	TGATCA	1 cut(s)	252
BcnI	CCSGG	1 cut(s)	265
BcoDI	GTCTC	1 cut(s)	299
BfaI	CTAG	6 cut(s)	23, 287, 302, 579, 591, 777
BisI	GCNGC	5 cut(s)	546, 549, 716, 754, 757
BlpI	GCTNAGC	2 cut(s)	78, 291
BlsI	GCNGC	5 cut(s)	547, 550, 717, 755, 758
BmcAI	AGTACT	1 cut(s)	62
Bme1390I	CCNGG	2 cut(s)	265, 444
Bme18I	GGWCC	3 cut(s)	281, 355, 617
BmeRI	GACNNNNNGTC	1 cut(s)	139
BmeT110I	CYCGRG	1 cut(s)	170
BmgT120I	GGNCC	3 cut(s)	281, 355, 617
BmiI	GGNNCC	2 cut(s)	618, 695
BmrFI	CCNGG	2 cut(s)	265, 444
BmsI	GCATC	1 cut(s)	367
Bpu1102I	GCTNAGC	2 cut(s)	78, 291
BpuEI	CTTGAG	2 cut(s)	158, 540
BpuMI	CCSGG	1 cut(s)	265
BsaJI	CCNNGG	2 cut(s)	443, 629
BsaWI	WCCGGW	1 cut(s)	278
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 121, 364
Bse118I	RCCGGY	1 cut(s)	278
Bse1I	ACTGG	1 cut(s)	661
BseBI	CCWGG	1 cut(s)	444
BseDI	CCNNGG	2 cut(s)	443, 629
BseGI	GGATG	1 cut(s)	130
BseLI	CCNNNNNNNGG	3 cut(s)	45, 121, 364
BseMII	CTCAG	4 cut(s)	69, 201, 282, 564
BseNI	ACTGG	1 cut(s)	661
BseXI	GCAGC	4 cut(s)	532, 535, 727, 768
Bsh1285I	CGRYCG	1 cut(s)	238
BshTI	ACCGGT	1 cut(s)	278
BsiEI	CGRYCG	1 cut(s)	238
BsiHKAI	GWGCWC	2 cut(s)	84, 177
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	2 cut(s)	264, 279
BslFI	GGGAC	1 cut(s)	354
BslI	CCNNNNNNNGG	3 cut(s)	45, 121, 364
BsmAI	GTCTC	1 cut(s)	299
BsmFI	GGGAC	1 cut(s)	354
BsoBI	CYCGRG	1 cut(s)	170
Bsp1286I	GDGCHC	3 cut(s)	84, 177, 790
Bsp143I	GATC	3 cut(s)	48, 190, 252
Bsp1720I	GCTNAGC	2 cut(s)	78, 291
BspACI	CCGC	4 cut(s)	45, 234, 299, 753
BspCNI	CTCAG	4 cut(s)	70, 200, 283, 565
BspHI	TCATGA	1 cut(s)	496
BspLI	GGNNCC	2 cut(s)	618, 695
BspPI	GGATC	1 cut(s)	56
BsrFI	RCCGGY	1 cut(s)	278
BsrI	ACTGG	1 cut(s)	661
BssAI	RCCGGY	1 cut(s)	278
BssECI	CCNNGG	2 cut(s)	443, 629
BssMI	GATC	3 cut(s)	48, 190, 252
BssSI	CACGAG	1 cut(s)	789
BssT1I	CCWWGG	1 cut(s)	629
Bst2BI	CACGAG	1 cut(s)	789
Bst2UI	CCWGG	1 cut(s)	444
BstDEI	CTNAG	5 cut(s)	12, 78, 187, 291, 573
BstF5I	GGATG	1 cut(s)	130
BstKTI	GATC	3 cut(s)	51, 193, 255
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	3 cut(s)	48, 190, 252
BstMCI	CGRYCG	1 cut(s)	238
BstMWI	GCNNNNNNNGC	2 cut(s)	439, 542
BstNI	CCWGG	1 cut(s)	444
BstNSI	RCATGY	1 cut(s)	599
BstSCI	CCNGG	2 cut(s)	263, 442
BstV1I	GCAGC	4 cut(s)	532, 535, 727, 768
BtgZI	GCGATG	1 cut(s)	94
BtsCI	GGATG	1 cut(s)	130
CciI	TCATGA	1 cut(s)	496
Cfr10I	RCCGGY	1 cut(s)	278
Cfr13I	GGNCC	3 cut(s)	281, 355, 617
Csp6I	GTAC	1 cut(s)	61
CspAI	ACCGGT	1 cut(s)	278
CviAII	CATG	6 cut(s)	121, 321, 497, 596, 652, 700
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	5 cut(s)	12, 78, 187, 291, 573
DpnI	GATC	3 cut(s)	50, 192, 254
DpnII	GATC	3 cut(s)	48, 190, 252
DriI	GACNNNNNGTC	1 cut(s)	139
Eam1105I	GACNNNNNGTC	1 cut(s)	139
Ecl136II	GAGCTC	1 cut(s)	175
Eco130I	CCWWGG	1 cut(s)	629
Eco24I	GRGCYC	2 cut(s)	177, 790
Eco47I	GGWCC	3 cut(s)	281, 355, 617
Eco53kI	GAGCTC	1 cut(s)	175
Eco57I	CTGAAG	1 cut(s)	428
Eco88I	CYCGRG	1 cut(s)	170
EcoICRI	GAGCTC	1 cut(s)	175
EcoO109I	RGGNCCY	1 cut(s)	617
EcoRII	CCWGG	1 cut(s)	442
EcoT14I	CCWWGG	1 cut(s)	629
EcoT38I	GRGCYC	2 cut(s)	177, 790
ErhI	CCWWGG	1 cut(s)	629
FaeI	CATG	6 cut(s)	124, 324, 500, 599, 655, 703
FaqI	GGGAC	1 cut(s)	354
FatI	CATG	6 cut(s)	120, 320, 496, 595, 651, 699
FauI	CCCGC	1 cut(s)	38
FauNDI	CATATG	1 cut(s)	370
FbaI	TGATCA	1 cut(s)	252
FblI	GTMKAC	1 cut(s)	704
Fnu4HI	GCNGC	5 cut(s)	546, 549, 716, 754, 757
FokI	GGATG	1 cut(s)	137
FriOI	GRGCYC	2 cut(s)	177, 790
Fsp4HI	GCNGC	5 cut(s)	546, 549, 716, 754, 757
FspBI	CTAG	6 cut(s)	23, 287, 302, 579, 591, 777
GluI	GCNGC	5 cut(s)	546, 549, 716, 754, 757
HapII	CCGG	2 cut(s)	264, 279
Hin1II	CATG	6 cut(s)	124, 324, 500, 599, 655, 703
HincII	GTYRAC	1 cut(s)	705
HindII	GTYRAC	1 cut(s)	705
HindIII	AAGCTT	1 cut(s)	69
HinfI	GANTC	4 cut(s)	8, 140, 203, 493
HpaII	CCGG	2 cut(s)	264, 279
HphI	GGTGA	1 cut(s)	736
Hpy166II	GTNNAC	2 cut(s)	588, 705
Hpy188I	TCNGA	1 cut(s)	190
Hpy188III	TCNNGA	1 cut(s)	497
Hpy8I	GTNNAC	2 cut(s)	588, 705
Hpy99I	CGWCG	1 cut(s)	709
HpyAV	CCTTC	2 cut(s)	309, 601
HpyCH4IV	ACGT	3 cut(s)	335, 707, 801
HpyCH4V	TGCA	4 cut(s)	66, 90, 101, 536
HpyF10VI	GCNNNNNNNGC	2 cut(s)	439, 542
HpyF3I	CTNAG	5 cut(s)	12, 78, 187, 291, 573
HpySE526I	ACGT	3 cut(s)	335, 707, 801
Hsp92II	CATG	6 cut(s)	124, 324, 500, 599, 655, 703
Ksp22I	TGATCA	1 cut(s)	252
Kzo9I	GATC	3 cut(s)	48, 190, 252
LpnPI	CCDG	8 cut(s)	15, 52, 277, 292, 371, 429, 456, 642
Lsp1109I	GCAGC	4 cut(s)	532, 535, 727, 768
LweI	GCATC	1 cut(s)	367
MaeI	CTAG	6 cut(s)	23, 287, 302, 579, 591, 777
MaeII	ACGT	3 cut(s)	335, 707, 801
MaeIII	GTNAC	6 cut(s)	5, 25, 53, 104, 647, 708
MalI	GATC	3 cut(s)	50, 192, 254
MboI	GATC	3 cut(s)	48, 190, 252
MfeI	CAATTG	3 cut(s)	85, 344, 531
MhlI	GDGCHC	3 cut(s)	84, 177, 790
MluCI	AATT	7 cut(s)	85, 327, 344, 460, 531, 636, 732
MlyI	GAGTC	2 cut(s)	2, 149
MnlI	CCTC	7 cut(s)	35, 196, 294, 342, 390, 520, 707
MseI	TTAA	1 cut(s)	330
MspI	CCGG	2 cut(s)	264, 279
MspR9I	CCNGG	2 cut(s)	265, 444
MunI	CAATTG	3 cut(s)	85, 344, 531
MvaI	CCWGG	1 cut(s)	444
MwoI	GCNNNNNNNGC	2 cut(s)	439, 542
NciI	CCSGG	1 cut(s)	265
NdeI	CATATG	1 cut(s)	370
NdeII	GATC	3 cut(s)	48, 190, 252
NlaIII	CATG	6 cut(s)	124, 324, 500, 599, 655, 703
NlaIV	GGNNCC	2 cut(s)	618, 695
NmuCI	GTSAC	4 cut(s)	5, 25, 104, 647
NspI	RCATGY	1 cut(s)	599
PaeR7I	CTCGAG	1 cut(s)	170
PagI	TCATGA	1 cut(s)	496
PfeI	GAWTC	2 cut(s)	203, 493
PflMI	CCANNNNNTGG	2 cut(s)	121, 364
PinAI	ACCGGT	1 cut(s)	278
PkrI	GCNGC	5 cut(s)	547, 550, 717, 755, 758
PleI	GAGTC	2 cut(s)	2, 148
PpsI	GAGTC	2 cut(s)	2, 148
PpuMI	RGGWCCY	1 cut(s)	617
Psp124BI	GAGCTC	1 cut(s)	177
Psp5II	RGGWCCY	1 cut(s)	617
Psp6I	CCWGG	1 cut(s)	442
PspGI	CCWGG	1 cut(s)	442
PspN4I	GGNNCC	2 cut(s)	618, 695
PspPI	GGNCC	3 cut(s)	281, 355, 617
PspPPI	RGGWCCY	1 cut(s)	617
PspXI	VCTCGAGB	1 cut(s)	170
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SacI	GAGCTC	1 cut(s)	177
SalI	GTCGAC	1 cut(s)	703
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	5 cut(s)	546, 549, 716, 754, 757
Sau3AI	GATC	3 cut(s)	48, 190, 252
Sau96I	GGNCC	3 cut(s)	281, 355, 617
ScaI	AGTACT	1 cut(s)	62
SchI	GAGTC	2 cut(s)	2, 149
ScrFI	CCNGG	2 cut(s)	265, 444
SduI	GDGCHC	3 cut(s)	84, 177, 790
SfaNI	GCATC	1 cut(s)	367
Sfr274I	CTCGAG	1 cut(s)	170
SinI	GGWCC	3 cut(s)	281, 355, 617
SlaI	CTCGAG	1 cut(s)	170
SmlI	CTYRAG	3 cut(s)	137, 170, 555
SmoI	CTYRAG	3 cut(s)	137, 170, 555
Sse9I	AATT	7 cut(s)	85, 327, 344, 460, 531, 636, 732
SsiI	CCGC	4 cut(s)	45, 234, 299, 753
SspMI	CTAG	6 cut(s)	23, 287, 302, 579, 591, 777
SstI	GAGCTC	1 cut(s)	177
StyD4I	CCNGG	2 cut(s)	263, 442
StyI	CCWWGG	1 cut(s)	629
TaiI	ACGT	3 cut(s)	338, 710, 804
TaqI	TCGA	3 cut(s)	171, 177, 704
TasI	AATT	7 cut(s)	85, 327, 344, 460, 531, 636, 732
TatI	WGTACW	1 cut(s)	60
TauI	GCSGC	1 cut(s)	756
TfiI	GAWTC	2 cut(s)	203, 493
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TseFI	GTSAC	4 cut(s)	5, 25, 104, 647
TseI	GCWGC	4 cut(s)	545, 548, 715, 756
Tsp45I	GTSAC	4 cut(s)	5, 25, 104, 647
Van91I	CCANNNNNTGG	2 cut(s)	121, 364
VpaK11BI	GGWCC	3 cut(s)	281, 355, 617
XapI	RAATTY	2 cut(s)	460, 732
XceI	RCATGY	1 cut(s)	599
XhoI	CTCGAG	1 cut(s)	170
XmiI	GTMKAC	1 cut(s)	704
XspI	CTAG	6 cut(s)	23, 287, 302, 579, 591, 777
ZrmI	AGTACT	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.