Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0009644

Physical Location & Seq

Genomic Coordinates Forward (+)

20524788 .. 20531883

Gene Structure 7096 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG209600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGCGTCATGGCTCAGTGGCAGCATTGTCAATATCGGGAGCATCGTGGGCAAAGCGCCGAACCCTTGGGCAGGGTCATATTGTGCAAGCAAGGCATATGTTCATGCCGTGTCAAACACTTTGAGGGTGGAACTGAAGCCATTTGGGATTGATGTGGCGCTTGTAATGCCTGGGGCAGTAAGGTCAAATTTTGGGAGTGCTAATGTTGATAGATTGGCGAATCATGATTGGAAACTCTACAAGGATTTCAAGGAGGCAATTGCAGAGAGAGTTGCTGCTTCTCAAGGGGGTAAAGCAACTGAGCCTAGTGTGTTTGCTAGGCATGTGGCAAAGAAGGTTTTGGGTCCTAAACCACCAAGGCTAATTAGTTTTGCTCACATGACTGGTTGTTTGCTGTGCTTTCTTGCTCTCCACTTTGGTGTATTCATGACGCGCTTCAATAAGAGCTTCAAAAAGAGGTATGTCTTACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000140 GO:0003674 GO:0003824 GO:0004806 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005811 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006644 GO:0006650 GO:0006654 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009056 GO:0009058 GO:0009987 GO:0012505 GO:0016042 GO:0016298 GO:0016491 GO:0016614 GO:0016616 GO:0016787 GO:0016788 GO:0019433 GO:0019637 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046461 GO:0046464 GO:0046473 GO:0046474 GO:0046486 GO:0046503 GO:0052689 GO:0055114 GO:0071704 GO:0090407 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

157

Amino Acids

17.12

Weight (kDa)

10.07

Isoelectric Point (pI)

21.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	6 - 66	2.4e-14	short chain dehydrogenase
adh_short_C2	PF13561	7 - 67	1.8e-07	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009644)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18260
malus_domestica	MD02G1189900.v1.1
prunus_persica	Prupe.6G216500_v2.0.a1
pyrus_communis	pycom15g26350
rosa_chinensis	RchiOBHm_Chr2g0108801 RchiOBHm_Chr2g0108811 RchiOBHm_Chr2g0108821
rosa_laevigata	RLG00000017691
rosa_multiflora	Rmu_sc0003973.1_g000018 Rmu_sc0003973.1_g000021
rosa_roxburghii	Rroxscaffold_2G00134790
rosa_rugosa	Rorug02G0156200
rosa_samantha	Rh2AG206400 Rh2AG206500 Rh2BG217700 Rh2CG209400 Rh2CG209500 Rh2CG209600 Rh2DG212700 Rh2DG212800
rosa_wichuraiana	Rw2G016410 Rw2G016420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	433
AcsI	RAATTY	1 cut(s)	187
AcuI	CTGAAG	1 cut(s)	155
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	71
AgsI	TTSAA	3 cut(s)	250, 439, 451
AjnI	CCWGG	1 cut(s)	169
AleI	CACNNNNGTG	1 cut(s)	417
AluBI	AGCT	1 cut(s)	447
AluI	AGCT	1 cut(s)	447
ApeKI	GCWGC	2 cut(s)	21, 275
ApoI	RAATTY	1 cut(s)	187
ArsI	GACNNNNNNTTYG	2 cut(s)	373, 405
AspLEI	GCGC	3 cut(s)	58, 160, 435
AspS9I	GGNCC	1 cut(s)	344
AvaII	GGWCC	1 cut(s)	344
BbvI	GCAGC	2 cut(s)	33, 262
BceAI	ACGGC	1 cut(s)	92
BciT130I	CCWGG	1 cut(s)	171
BfaI	CTAG	2 cut(s)	306, 318
BfoI	RGCGCY	2 cut(s)	59, 161
BisI	GCNGC	2 cut(s)	22, 276
BlsI	GCNGC	2 cut(s)	23, 277
Bme1390I	CCNGG	1 cut(s)	171
Bme18I	GGWCC	1 cut(s)	344
BmgT120I	GGNCC	1 cut(s)	344
BmiI	GGNNCC	1 cut(s)	345
BmrFI	CCNGG	1 cut(s)	171
BmsI	GCATC	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	267
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	65, 170, 356
Bsc4I	CCNNNNNNNGG	1 cut(s)	71
Bse1I	ACTGG	1 cut(s)	388
BseBI	CCWGG	1 cut(s)	171
BseDI	CCNNGG	3 cut(s)	65, 170, 356
BseLI	CCNNNNNNNGG	1 cut(s)	71
BseMII	CTCAG	2 cut(s)	28, 291
BseNI	ACTGG	1 cut(s)	388
BseXI	GCAGC	2 cut(s)	33, 262
Bsh1236I	CGCG	1 cut(s)	433
BslI	CCNNNNNNNGG	1 cut(s)	71
BspCNI	CTCAG	2 cut(s)	27, 292
BspFNI	CGCG	1 cut(s)	433
BspHI	TCATGA	2 cut(s)	223, 426
BspLI	GGNNCC	1 cut(s)	345
BsrI	ACTGG	1 cut(s)	388
BssECI	CCNNGG	3 cut(s)	65, 170, 356
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	2 cut(s)	65, 356
Bst2UI	CCWGG	1 cut(s)	171
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	88
BstDEI	CTNAG	2 cut(s)	14, 300
BstENI	CCTNNNNNAGG	1 cut(s)	69
BstFNI	CGCG	1 cut(s)	433
BstH2I	RGCGCY	2 cut(s)	59, 161
BstHHI	GCGC	3 cut(s)	58, 160, 435
BstMWI	GCNNNNNNNGC	3 cut(s)	48, 92, 166
BstNI	CCWGG	1 cut(s)	171
BstNSI	RCATGY	1 cut(s)	326
BstSCI	CCNGG	1 cut(s)	169
BstUI	CGCG	1 cut(s)	433
BstV1I	GCAGC	2 cut(s)	33, 262
BtsIMutI	CAGTG	1 cut(s)	22
Cac8I	GCNNGC	1 cut(s)	88
CciI	TCATGA	2 cut(s)	223, 426
CfoI	GCGC	3 cut(s)	58, 160, 435
Cfr13I	GGNCC	1 cut(s)	344
CseI	GACGC	1 cut(s)	439
CviAII	CATG	6 cut(s)	9, 104, 224, 323, 379, 427
CviJI	RGCY	5 cut(s)	13, 139, 304, 361, 447
CviKI_1	RGCY	5 cut(s)	13, 139, 304, 361, 447
DdeI	CTNAG	2 cut(s)	14, 300
Eco130I	CCWWGG	2 cut(s)	65, 356
Eco47I	GGWCC	1 cut(s)	344
Eco57I	CTGAAG	1 cut(s)	155
EcoNI	CCTNNNNNAGG	1 cut(s)	69
EcoO109I	RGGNCCY	1 cut(s)	344
EcoRII	CCWGG	1 cut(s)	169
EcoT14I	CCWWGG	2 cut(s)	65, 356
ErhI	CCWWGG	2 cut(s)	65, 356
FaeI	CATG	6 cut(s)	12, 107, 227, 326, 382, 430
FatI	CATG	6 cut(s)	8, 103, 223, 322, 378, 426
FauNDI	CATATG	1 cut(s)	97
Fnu4HI	GCNGC	2 cut(s)	22, 276
Fsp4HI	GCNGC	2 cut(s)	22, 276
FspBI	CTAG	2 cut(s)	306, 318
GlaI	GCGC	3 cut(s)	57, 159, 434
GluI	GCNGC	2 cut(s)	22, 276
HaeII	RGCGCY	2 cut(s)	59, 161
HgaI	GACGC	1 cut(s)	439
HhaI	GCGC	3 cut(s)	58, 160, 435
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	6 cut(s)	12, 107, 227, 326, 382, 430
Hin6I	GCGC	3 cut(s)	56, 158, 433
HinP1I	GCGC	3 cut(s)	56, 158, 433
HinfI	GANTC	1 cut(s)	220
Hpy188III	TCNNGA	3 cut(s)	37, 224, 427
HpyAV	CCTTC	1 cut(s)	328
HpyCH4V	TGCA	2 cut(s)	86, 263
HpyF10VI	GCNNNNNNNGC	3 cut(s)	48, 92, 166
HpyF3I	CTNAG	2 cut(s)	14, 300
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	6 cut(s)	12, 107, 227, 326, 382, 430
HspAI	GCGC	3 cut(s)	56, 158, 433
LmnI	GCTCC	1 cut(s)	39
LpnPI	CCDG	4 cut(s)	57, 156, 183, 369
Lsp1109I	GCAGC	2 cut(s)	33, 262
LweI	GCATC	1 cut(s)	51
MaeI	CTAG	2 cut(s)	306, 318
MfeI	CAATTG	1 cut(s)	258
MluCI	AATT	3 cut(s)	187, 258, 363
MnlI	CCTC	3 cut(s)	117, 247, 450
MseI	TTAA	1 cut(s)	472
MslI	CAYNNNNRTG	1 cut(s)	417
MspR9I	CCNGG	1 cut(s)	171
MunI	CAATTG	1 cut(s)	258
MvaI	CCWGG	1 cut(s)	171
MvnI	CGCG	1 cut(s)	433
MwoI	GCNNNNNNNGC	3 cut(s)	48, 92, 166
NdeI	CATATG	1 cut(s)	97
NlaIII	CATG	6 cut(s)	12, 107, 227, 326, 382, 430
NlaIV	GGNNCC	1 cut(s)	345
NspI	RCATGY	1 cut(s)	326
OliI	CACNNNNGTG	1 cut(s)	417
PagI	TCATGA	2 cut(s)	223, 426
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	220
PkrI	GCNGC	2 cut(s)	23, 277
PpuMI	RGGWCCY	1 cut(s)	344
Psp5II	RGGWCCY	1 cut(s)	344
Psp6I	CCWGG	1 cut(s)	169
PspGI	CCWGG	1 cut(s)	169
PspN4I	GGNNCC	1 cut(s)	345
PspPI	GGNCC	1 cut(s)	344
PspPPI	RGGWCCY	1 cut(s)	344
RseI	CAYNNNNRTG	1 cut(s)	417
SaqAI	TTAA	1 cut(s)	472
SatI	GCNGC	2 cut(s)	22, 276
Sau96I	GGNCC	1 cut(s)	344
ScrFI	CCNGG	1 cut(s)	171
SetI	ASST	5 cut(s)	185, 339, 449, 461, 472
SfaNI	GCATC	1 cut(s)	51
SinI	GGWCC	1 cut(s)	344
SmiMI	CAYNNNNRTG	1 cut(s)	417
SmlI	CTYRAG	1 cut(s)	282
SmoI	CTYRAG	1 cut(s)	282
Sse9I	AATT	3 cut(s)	187, 258, 363
SspMI	CTAG	2 cut(s)	306, 318
StyD4I	CCNGG	1 cut(s)	169
StyI	CCWWGG	2 cut(s)	65, 356
TasI	AATT	3 cut(s)	187, 258, 363
TfiI	GAWTC	1 cut(s)	220
Tru1I	TTAA	1 cut(s)	472
Tru9I	TTAA	1 cut(s)	472
TscAI	CASTG	1 cut(s)	22
TseI	GCWGC	2 cut(s)	21, 275
TspDTI	ATGAA	2 cut(s)	92, 415
TspRI	CASTG	1 cut(s)	22
VpaK11BI	GGWCC	1 cut(s)	344
XagI	CCTNNNNNAGG	1 cut(s)	69
XapI	RAATTY	1 cut(s)	187
XceI	RCATGY	1 cut(s)	326
XspI	CTAG	2 cut(s)	306, 318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.