Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0004439

Physical Location & Seq

Genomic Coordinates Reverse (-)

18671957 .. 18677724

Gene Structure 5768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1195100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGCATGAGGATCCGGCGAGTATCCTGCTGGAACACTTGAAGCTGGTATTTGCTAAACCCCTCACTCTCCCTCTCTCTCTCTCATTAACATATACAGCAATGGCGAGCTCACAGGAAGAGGCCAAGCTCGAGCGATACCTCCAGTGGTTACAGGTTAATGGAGCGGAGCTACACGGCTGCAAAATCAAATACTCCGATTCCAACAAAGGTTTTGGCATTTTTTCGGCTAATGATGTTTCTGATGGGGTTCTATTAGTTGTTCATCTGGATTTGGCAATAACTCCAATGAGAGTTTTGCAAGACCCTCTTCTTGGACCAGAATGTAGAGCAATGTTTGAAGAAGGAGATGTAGATGATAGGTTCTTGATGATCTTATATCTCACAGTGGAGCGCCTCCGCAAGAATTCTTCTTGGAAACCGTACCTTGATATGCTTCCGACCACTTTTGGTAATCCACTTTGGTTTACTGATGATGAGCTTTTGGAGCTAAAAGGGACAACATGGTATCGAGCAATGGAACTGCAGAAGAAAAGCTTGGTGTCGTTATATGATGACAAACTGAAGGCTCTGGTGAAGAAACTGTTAACTCTGGATAGGGATTTGGAAAGAGATATGTGCTTTGAAGATTTCCTCTGGGCAAATTCTCTGTTTTGGACCCGTGCTTTAAACATTCCCCTTCCATATTCGTACGTATTTCCCAAAATTCAAGAAGACAGTGCGCTTCAGATGGCAAAAATTCTGAGGTTTCTACAAATATTTGCAAAGAAGAGTTGGTTAATGGAAGAGATGAAAGTGGTTGAAGGGGTTGATATTCAAGTTAGTAAAGTGACATCCCCGCCTAAACAAAACGAGACTGTCTGGGTGGAGGGTCTTGTTCCTGGCATTGACTTTTGCAACCATGATATAAAGGCAGCAGCAACATGGGAAGTTGATGAAACTGGATTGATAACTGGAGTTCCTAATTCTTGGTACCTTCTTTCTGCTGGACAACCCTTGCAGATCGACGCAGAGATTTTCATAAGTTATGGTAGCAAAGGGAACGAGGAACTGCTTTATCTGCATGGTTTTGTCCTTGATGATAATCCAGATGACTATCTCATGGTCCATTATCCTGTGGAGGCCATTCAAAACGTTCCCTTTGCAGACTCGATAGCACAGCTTCTCGAAGCACAGGTCTGCTATTGTCTGTTTCTGAATTTCATTAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase SET

Protein Analysis

404

Amino Acids

46.08

Weight (kDa)

4.78

Isoelectric Point (pI)

30.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01920 AT1G01920 AT1G01920 AT1G01920 AT1G01920
fragaria_vesca	FvH4_7g12930 FvH4_7g12930 FvH4_7g12930 FvH4_7g12930 FvH4_7g12930 FvH4_7g12930 FvH4_7g12930
malus_domestica	MD02G1195100.v1.1
prunus_persica	Prupe.2G153600_v2.0.a1 Prupe.2G153600_v2.0.a1 Prupe.2G153600_v2.0.a1
pyrus_communis	pycom02g15890 pycom07g11920
rosa_chinensis	RchiOBHm_Chr1g0352061
rosa_laevigata	RLG00000028363
rosa_roxburghii	Rroxscaffold_1G00063100 Rroxscaffold_4G00303300 Rroxscaffold_4G00303330 Rroxscaffold_4G00326370 Rroxscaffold_5G00366830
rosa_rugosa	Rorug01G0223700 Rorug01G0223700
rosa_samantha	Rh1AG238300 Rh1BG208700 Rh1CG222700 Rh1DG235100
rosa_wichuraiana	Rw1G020700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	969
AccB1I	GGYRCC	1 cut(s)	969
AccBSI	CCGCTC	1 cut(s)	164
AciI	CCGC	3 cut(s)	164, 397, 836
AclI	AACGTT	1 cut(s)	1131
AclWI	GGATC	2 cut(s)	5, 18
AcsI	RAATTY	5 cut(s)	403, 640, 702, 735, 1195
AcuI	CTGAAG	2 cut(s)	581, 707
AfaI	GTAC	3 cut(s)	422, 689, 971
AfiI	CCNNNNNNNGG	1 cut(s)	311
AgsI	TTSAA	7 cut(s)	40, 338, 623, 707, 800, 815, 1127
AjnI	CCWGG	1 cut(s)	877
AjuI	GAANNNNNNNTTGG	2 cut(s)	518, 550
AluBI	AGCT	8 cut(s)	43, 108, 127, 169, 478, 487, 534, 1159
AluI	AGCT	8 cut(s)	43, 108, 127, 169, 478, 487, 534, 1159
Alw21I	GWGCWC	1 cut(s)	110
Alw26I	GTCTC	1 cut(s)	845
AlwI	GGATC	2 cut(s)	5, 18
Ama87I	CYCGRG	1 cut(s)	128
AoxI	GGCC	2 cut(s)	120, 1119
ApeKI	GCWGC	3 cut(s)	177, 911, 914
ApoI	RAATTY	5 cut(s)	403, 640, 702, 735, 1195
ArsI	GACNNNNNNTTYG	2 cut(s)	1158, 1190
Asp718I	GGTACC	1 cut(s)	969
AspLEI	GCGC	2 cut(s)	393, 721
AspS9I	GGNCC	3 cut(s)	314, 654, 1102
AsuHPI	GGTGA	1 cut(s)	583
AvaI	CYCGRG	1 cut(s)	128
AvaII	GGWCC	3 cut(s)	314, 654, 1102
BamHI	GGATCC	1 cut(s)	10
BanI	GGYRCC	1 cut(s)	969
BanII	GRGCYC	1 cut(s)	110
BbsI	GAAGAC	1 cut(s)	717
Bbv12I	GWGCWC	1 cut(s)	110
BbvI	GCAGC	3 cut(s)	164, 923, 926
BccI	CCATC	2 cut(s)	236, 721
BceAI	ACGGC	1 cut(s)	190
BcgI	CGANNNNNNTGC	2 cut(s)	7, 41
BciT130I	CCWGG	1 cut(s)	879
BciVI	GTATCC	1 cut(s)	32
BcoDI	GTCTC	1 cut(s)	845
BfmI	CTRYAG	1 cut(s)	521
BfoI	RGCGCY	1 cut(s)	394
BfuI	GTATCC	1 cut(s)	32
BisI	GCNGC	3 cut(s)	178, 912, 915
BlsI	GCNGC	3 cut(s)	179, 913, 916
Bme1390I	CCNGG	1 cut(s)	879
Bme18I	GGWCC	3 cut(s)	314, 654, 1102
BmeT110I	CYCGRG	1 cut(s)	128
BmgT120I	GGNCC	3 cut(s)	314, 654, 1102
BmiI	GGNNCC	3 cut(s)	12, 656, 971
BmrFI	CCNGG	1 cut(s)	879
BpiI	GAAGAC	1 cut(s)	717
BpmI	CTGGAG	2 cut(s)	125, 972
BsaAI	YACGTR	1 cut(s)	691
BsaBI	GATNNNNATC	2 cut(s)	1080, 1092
Bsc4I	CCNNNNNNNGG	1 cut(s)	311
Bse1I	ACTGG	3 cut(s)	142, 943, 955
Bse3DI	GCAATG	3 cut(s)	105, 336, 519
Bse8I	GATNNNNATC	2 cut(s)	1080, 1092
BseBI	CCWGG	1 cut(s)	879
BseGI	GGATG	1 cut(s)	830
BseJI	GATNNNNATC	2 cut(s)	1080, 1092
BseLI	CCNNNNNNNGG	1 cut(s)	311
BseMI	GCAATG	3 cut(s)	105, 336, 519
BseMII	CTCAG	1 cut(s)	731
BseNI	ACTGG	3 cut(s)	142, 943, 955
BseXI	GCAGC	3 cut(s)	164, 923, 926
BshFI	GGCC	2 cut(s)	122, 1121
BshNI	GGYRCC	1 cut(s)	969
BsiHKAI	GWGCWC	1 cut(s)	110
BsiHKCI	CYCGRG	1 cut(s)	128
BsiSI	CCGG	1 cut(s)	14
BsiWI	CGTACG	1 cut(s)	687
BslFI	GGGAC	1 cut(s)	508
BslI	CCNNNNNNNGG	1 cut(s)	311
BsmAI	GTCTC	1 cut(s)	845
BsmFI	GGGAC	1 cut(s)	508
BsnI	GGCC	2 cut(s)	122, 1121
BsoBI	CYCGRG	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	110
Bsp143I	GATC	3 cut(s)	10, 369, 999
BspACI	CCGC	3 cut(s)	164, 397, 836
BspANI	GGCC	2 cut(s)	122, 1121
BspCNI	CTCAG	1 cut(s)	732
BspLI	GGNNCC	3 cut(s)	12, 656, 971
BspMAI	CTGCAG	1 cut(s)	525
BspPI	GGATC	2 cut(s)	5, 18
BspT107I	GGYRCC	1 cut(s)	969
BsrBI	CCGCTC	1 cut(s)	164
BsrDI	GCAATG	3 cut(s)	105, 336, 519
BsrI	ACTGG	3 cut(s)	142, 943, 955
BssMI	GATC	3 cut(s)	10, 369, 999
Bst2UI	CCWGG	1 cut(s)	879
Bst4CI	ACNGT	5 cut(s)	385, 420, 582, 716, 856
Bst6I	CTCTTC	4 cut(s)	111, 312, 761, 777
BstBAI	YACGTR	1 cut(s)	691
BstC8I	GCNNGC	1 cut(s)	106
BstDEI	CTNAG	1 cut(s)	740
BstF5I	GGATG	1 cut(s)	830
BstH2I	RGCGCY	1 cut(s)	394
BstHHI	GCGC	2 cut(s)	393, 721
BstKTI	GATC	3 cut(s)	13, 372, 1002
BstMAI	GTCTC	1 cut(s)	845
BstMBI	GATC	3 cut(s)	10, 369, 999
BstMWI	GCNNNNNNNGC	2 cut(s)	484, 1057
BstNI	CCWGG	1 cut(s)	879
BstSCI	CCNGG	1 cut(s)	877
BstSFI	CTRYAG	1 cut(s)	521
BstSNI	TACGTA	1 cut(s)	691
BstV1I	GCAGC	3 cut(s)	164, 923, 926
BstV2I	GAAGAC	1 cut(s)	717
BstX2I	RGATCY	1 cut(s)	10
BstYI	RGATCY	1 cut(s)	10
BsuI	GTATCC	1 cut(s)	32
BsuRI	GGCC	2 cut(s)	122, 1121
BtsCI	GGATG	1 cut(s)	830
BtsIMutI	CAGTG	3 cut(s)	149, 390, 721
Cac8I	GCNNGC	1 cut(s)	106
CfoI	GCGC	2 cut(s)	393, 721
Cfr13I	GGNCC	3 cut(s)	314, 654, 1102
CseI	GACGC	1 cut(s)	1013
Csp6I	GTAC	3 cut(s)	421, 688, 970
CviAII	CATG	6 cut(s)	5, 501, 899, 921, 1061, 1099
CviQI	GTAC	3 cut(s)	421, 688, 970
DdeI	CTNAG	1 cut(s)	740
DpnI	GATC	3 cut(s)	12, 371, 1001
DpnII	GATC	3 cut(s)	10, 369, 999
DraI	TTTAAA	1 cut(s)	666
Eam1104I	CTCTTC	4 cut(s)	111, 312, 761, 777
EarI	CTCTTC	4 cut(s)	111, 312, 761, 777
Ecl136II	GAGCTC	1 cut(s)	108
Eco105I	TACGTA	1 cut(s)	691
Eco24I	GRGCYC	1 cut(s)	110
Eco47I	GGWCC	3 cut(s)	314, 654, 1102
Eco53kI	GAGCTC	1 cut(s)	108
Eco57I	CTGAAG	2 cut(s)	581, 707
Eco88I	CYCGRG	1 cut(s)	128
EcoICRI	GAGCTC	1 cut(s)	108
EcoRI	GAATTC	1 cut(s)	403
EcoRII	CCWGG	1 cut(s)	877
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	110
FaeI	CATG	6 cut(s)	8, 504, 902, 924, 1064, 1102
FalI	AAGNNNNNCTT	4 cut(s)	291, 323, 518, 550
FaqI	GGGAC	1 cut(s)	508
FatI	CATG	6 cut(s)	4, 500, 898, 920, 1060, 1098
FauI	CCCGC	1 cut(s)	843
Fnu4HI	GCNGC	3 cut(s)	178, 912, 915
FokI	GGATG	1 cut(s)	817
FriOI	GRGCYC	1 cut(s)	110
Fsp4HI	GCNGC	3 cut(s)	178, 912, 915
GlaI	GCGC	2 cut(s)	392, 720
GluI	GCNGC	3 cut(s)	178, 912, 915
GsuI	CTGGAG	2 cut(s)	125, 972
HaeII	RGCGCY	1 cut(s)	394
HaeIII	GGCC	2 cut(s)	122, 1121
HapII	CCGG	1 cut(s)	14
HgaI	GACGC	1 cut(s)	1013
HhaI	GCGC	2 cut(s)	393, 721
Hin1II	CATG	6 cut(s)	8, 504, 902, 924, 1064, 1102
Hin6I	GCGC	2 cut(s)	391, 719
HinP1I	GCGC	2 cut(s)	391, 719
HincII	GTYRAC	1 cut(s)	585
HindII	GTYRAC	1 cut(s)	585
HindIII	AAGCTT	1 cut(s)	532
HinfI	GANTC	2 cut(s)	197, 1145
HpaI	GTTAAC	1 cut(s)	585
HpaII	CCGG	1 cut(s)	14
HphI	GGTGA	1 cut(s)	583
Hpy166II	GTNNAC	2 cut(s)	465, 585
Hpy188I	TCNGA	6 cut(s)	196, 241, 438, 726, 741, 1194
Hpy188III	TCNNGA	6 cut(s)	266, 364, 590, 707, 1085, 1163
Hpy8I	GTNNAC	2 cut(s)	465, 585
Hpy99I	CGWCG	1 cut(s)	1007
HpyAV	CCTTC	5 cut(s)	335, 556, 686, 794, 983
HpyCH4III	ACNGT	5 cut(s)	385, 420, 582, 716, 856
HpyCH4IV	ACGT	2 cut(s)	690, 1131
HpyCH4V	TGCA	9 cut(s)	4, 180, 298, 523, 761, 894, 997, 1060, 1142
HpyF10VI	GCNNNNNNNGC	2 cut(s)	484, 1057
HpyF3I	CTNAG	1 cut(s)	740
HpySE526I	ACGT	2 cut(s)	690, 1131
Hsp92II	CATG	6 cut(s)	8, 504, 902, 924, 1064, 1102
HspAI	GCGC	2 cut(s)	391, 719
KpnI	GGTACC	1 cut(s)	973
KspAI	GTTAAC	1 cut(s)	585
Kzo9I	GATC	3 cut(s)	10, 369, 999
LmnI	GCTCC	4 cut(s)	161, 166, 388, 484
Lsp1109I	GCAGC	3 cut(s)	164, 923, 926
MaeII	ACGT	2 cut(s)	690, 1131
MaeIII	GTNAC	2 cut(s)	147, 826
MalI	GATC	3 cut(s)	12, 371, 1001
MbiI	CCGCTC	1 cut(s)	164
MboI	GATC	3 cut(s)	10, 369, 999
MflI	RGATCY	1 cut(s)	10
MhlI	GDGCHC	1 cut(s)	110
MluCI	AATT	6 cut(s)	403, 640, 702, 735, 961, 1195
MlyI	GAGTC	1 cut(s)	1139
MmeI	TCCRAC	2 cut(s)	225, 461
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	6 cut(s)	86, 156, 584, 665, 776, 1203
MspI	CCGG	1 cut(s)	14
MspR9I	CCNGG	1 cut(s)	879
MvaI	CCWGG	1 cut(s)	879
MwoI	GCNNNNNNNGC	2 cut(s)	484, 1057
NdeII	GATC	3 cut(s)	10, 369, 999
NlaIII	CATG	6 cut(s)	8, 504, 902, 924, 1064, 1102
NlaIV	GGNNCC	3 cut(s)	12, 656, 971
NmuCI	GTSAC	1 cut(s)	826
NsiI	ATGCAT	1 cut(s)	6
PaeR7I	CTCGAG	1 cut(s)	128
PfeI	GAWTC	1 cut(s)	197
Pfl23II	CGTACG	1 cut(s)	687
PkrI	GCNGC	3 cut(s)	179, 913, 916
PleI	GAGTC	1 cut(s)	1139
PpsI	GAGTC	1 cut(s)	1139
Ppu21I	YACGTR	1 cut(s)	691
Psp124BI	GAGCTC	1 cut(s)	110
Psp1406I	AACGTT	1 cut(s)	1131
Psp6I	CCWGG	1 cut(s)	877
PspGI	CCWGG	1 cut(s)	877
PspLI	CGTACG	1 cut(s)	687
PspN4I	GGNNCC	3 cut(s)	12, 656, 971
PspPI	GGNCC	3 cut(s)	314, 654, 1102
PspXI	VCTCGAGB	1 cut(s)	128
PstI	CTGCAG	1 cut(s)	525
PsuI	RGATCY	1 cut(s)	10
RsaI	GTAC	3 cut(s)	422, 689, 971
RsaNI	GTAC	3 cut(s)	421, 688, 970
SacI	GAGCTC	1 cut(s)	110
SaqAI	TTAA	6 cut(s)	86, 156, 584, 665, 776, 1203
SatI	GCNGC	3 cut(s)	178, 912, 915
Sau3AI	GATC	3 cut(s)	10, 369, 999
Sau96I	GGNCC	3 cut(s)	314, 654, 1102
SchI	GAGTC	1 cut(s)	1139
ScrFI	CCNGG	1 cut(s)	879
SduI	GDGCHC	1 cut(s)	110
SfcI	CTRYAG	1 cut(s)	521
Sfr274I	CTCGAG	1 cut(s)	128
SinI	GGWCC	3 cut(s)	314, 654, 1102
SlaI	CTCGAG	1 cut(s)	128
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
SnaBI	TACGTA	1 cut(s)	691
Sse9I	AATT	6 cut(s)	403, 640, 702, 735, 961, 1195
SsiI	CCGC	3 cut(s)	164, 397, 836
SspI	AATATT	1 cut(s)	756
SstI	GAGCTC	1 cut(s)	110
StyD4I	CCNGG	1 cut(s)	877
TaaI	ACNGT	5 cut(s)	385, 420, 582, 716, 856
TaiI	ACGT	2 cut(s)	693, 1134
TaqI	TCGA	5 cut(s)	129, 508, 1002, 1148, 1164
TasI	AATT	6 cut(s)	403, 640, 702, 735, 961, 1195
TfiI	GAWTC	1 cut(s)	197
Tru1I	TTAA	6 cut(s)	86, 156, 584, 665, 776, 1203
Tru9I	TTAA	6 cut(s)	86, 156, 584, 665, 776, 1203
TscAI	CASTG	3 cut(s)	149, 390, 721
TseFI	GTSAC	1 cut(s)	826
TseI	GCWGC	3 cut(s)	177, 911, 914
Tsp45I	GTSAC	1 cut(s)	826
TspDTI	ATGAA	5 cut(s)	251, 803, 948, 1006, 1189
TspRI	CASTG	3 cut(s)	149, 390, 721
VpaK11BI	GGWCC	3 cut(s)	314, 654, 1102
XapI	RAATTY	5 cut(s)	403, 640, 702, 735, 1195
XhoI	CTCGAG	1 cut(s)	128
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.