Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0004439

Physical Location & Seq

Genomic Coordinates Reverse (-)

12945185 .. 12947247

Gene Structure 2063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g15890.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGTACCTTCTTTCTGCTGGACAACCCTTGCAGATTGACGCACAGATTTCCATAAGTTATGGTAGCAAAGGGAACGAGGAACTGCTTTATCTATATGGTTTTGTCCTTGATGATAATCCAGATGACTATCTCATGGTCCATTATCCAGTTGAGGCCATTCAAAACGTTCCCTTTGCAGACTCGAAAGCACAGCTTCTTGAAGCACAGAAAGGCGAAACGAGGTGTCTGTTACCTAGAAGTTTACTGGATCATGGCTTTTTCCCAGTAGGCAACTCAAATACTGAAGGAGGTGAGAAGTGCAAACTCGACCATGTTTGCAGCTATAGTTGGAGTGGCCAGCCCAAGATGCCATCGTACTCGAGCAGGTTGGTTTTCCATGAAGCCTTTTTGACAGCCTTGAGGACTATAGCCATGAAGGAGGATGAGCTACTTCAGGTTTCATCGCTGCTGGAAGAGCTTGTACAATCAAGAGAGGGGAGGCAACCATCTGATTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase SET

Protein Analysis

166

Amino Acids

18.46

Weight (kDa)

4.73

Isoelectric Point (pI)

50.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01920 AT1G01920 AT1G01920 AT1G01920 AT1G01920
fragaria_vesca	FvH4_7g12930 FvH4_7g12930 FvH4_7g12930 FvH4_7g12930 FvH4_7g12930 FvH4_7g12930 FvH4_7g12930
malus_domestica	MD02G1195100.v1.1
prunus_persica	Prupe.2G153600_v2.0.a1 Prupe.2G153600_v2.0.a1 Prupe.2G153600_v2.0.a1
pyrus_communis	pycom02g15890 pycom07g11920
rosa_chinensis	RchiOBHm_Chr1g0352061
rosa_laevigata	RLG00000028363
rosa_roxburghii	Rroxscaffold_1G00063100 Rroxscaffold_4G00303300 Rroxscaffold_4G00303330 Rroxscaffold_4G00326370 Rroxscaffold_5G00366830
rosa_rugosa	Rorug01G0223700 Rorug01G0223700
rosa_samantha	Rh1AG238300 Rh1BG208700 Rh1CG222700 Rh1DG235100
rosa_wichuraiana	Rw1G020700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	354
AclI	AACGTT	1 cut(s)	165
AclWI	GGATC	1 cut(s)	255
AcoI	YGGCCR	1 cut(s)	334
AcuI	CTGAAG	2 cut(s)	303, 416
AfaI	GTAC	3 cut(s)	5, 356, 462
AgsI	TTSAA	2 cut(s)	161, 200
AluBI	AGCT	4 cut(s)	193, 321, 427, 457
AluI	AGCT	4 cut(s)	193, 321, 427, 457
AlwI	GGATC	1 cut(s)	255
Ama87I	CYCGRG	1 cut(s)	358
AoxI	GGCC	2 cut(s)	153, 334
ApeKI	GCWGC	2 cut(s)	318, 445
AspS9I	GGNCC	1 cut(s)	136
AsuHPI	GGTGA	1 cut(s)	302
AvaI	CYCGRG	1 cut(s)	358
AvaII	GGWCC	1 cut(s)	136
BalI	TGGCCA	1 cut(s)	336
BarI	GAAGNNNNNNTAC	2 cut(s)	444, 476
BbvI	GCAGC	2 cut(s)	330, 432
BccI	CCATC	2 cut(s)	358, 493
BfaI	CTAG	1 cut(s)	234
BfmI	CTRYAG	2 cut(s)	322, 405
BfuAI	ACCTGC	1 cut(s)	354
BisI	GCNGC	2 cut(s)	319, 446
BlsI	GCNGC	2 cut(s)	320, 447
Bme18I	GGWCC	1 cut(s)	136
BmeT110I	CYCGRG	1 cut(s)	358
BmgT120I	GGNCC	1 cut(s)	136
BmrI	ACTGGG	1 cut(s)	257
BmsI	GCATC	1 cut(s)	336
BmuI	ACTGGG	1 cut(s)	257
BpuEI	CTTGAG	1 cut(s)	418
BsaBI	GATNNNNATC	2 cut(s)	114, 126
Bse1I	ACTGG	3 cut(s)	146, 249, 263
Bse8I	GATNNNNATC	2 cut(s)	114, 126
BseGI	GGATG	1 cut(s)	427
BseJI	GATNNNNATC	2 cut(s)	114, 126
BseNI	ACTGG	3 cut(s)	146, 249, 263
BseXI	GCAGC	2 cut(s)	330, 432
BshFI	GGCC	2 cut(s)	155, 336
BsiHKCI	CYCGRG	1 cut(s)	358
BsnI	GGCC	2 cut(s)	155, 336
BsoBI	CYCGRG	1 cut(s)	358
Bsp1407I	TGTACA	1 cut(s)	460
Bsp143I	GATC	1 cut(s)	247
BspANI	GGCC	2 cut(s)	155, 336
BspMI	ACCTGC	1 cut(s)	354
BspPI	GGATC	1 cut(s)	255
BspQI	GCTCTTC	1 cut(s)	447
BsrGI	TGTACA	1 cut(s)	460
BsrI	ACTGG	3 cut(s)	146, 249, 263
BssMI	GATC	1 cut(s)	247
Bst6I	CTCTTC	1 cut(s)	447
BstAUI	TGTACA	1 cut(s)	460
BstC8I	GCNNGC	1 cut(s)	338
BstF5I	GGATG	1 cut(s)	427
BstKTI	GATC	1 cut(s)	250
BstMBI	GATC	1 cut(s)	247
BstMWI	GCNNNNNNNGC	2 cut(s)	346, 454
BstSFI	CTRYAG	2 cut(s)	322, 405
BstV1I	GCAGC	2 cut(s)	330, 432
BsuRI	GGCC	2 cut(s)	155, 336
BtgZI	GCGATG	1 cut(s)	426
BtsCI	GGATG	1 cut(s)	427
BveI	ACCTGC	1 cut(s)	354
Cac8I	GCNNGC	1 cut(s)	338
Cfr13I	GGNCC	1 cut(s)	136
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	3 cut(s)	4, 355, 461
CviAII	CATG	5 cut(s)	133, 251, 311, 377, 412
CviQI	GTAC	3 cut(s)	4, 355, 461
DpnI	GATC	1 cut(s)	249
DpnII	GATC	1 cut(s)	247
EaeI	YGGCCR	1 cut(s)	334
Eam1104I	CTCTTC	1 cut(s)	447
EarI	CTCTTC	1 cut(s)	447
Eco47I	GGWCC	1 cut(s)	136
Eco57I	CTGAAG	2 cut(s)	303, 416
Eco88I	CYCGRG	1 cut(s)	358
FaeI	CATG	5 cut(s)	136, 254, 314, 380, 415
FalI	AAGNNNNNCTT	2 cut(s)	177, 209
FatI	CATG	5 cut(s)	132, 250, 310, 376, 411
Fnu4HI	GCNGC	2 cut(s)	319, 446
FokI	GGATG	1 cut(s)	434
Fsp4HI	GCNGC	2 cut(s)	319, 446
FspBI	CTAG	1 cut(s)	234
GluI	GCNGC	2 cut(s)	319, 446
HaeIII	GGCC	2 cut(s)	155, 336
HgaI	GACGC	1 cut(s)	47
Hin1II	CATG	5 cut(s)	136, 254, 314, 380, 415
HinfI	GANTC	2 cut(s)	179, 491
HphI	GGTGA	1 cut(s)	302
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188I	TCNGA	1 cut(s)	490
Hpy188III	TCNNGA	3 cut(s)	119, 197, 468
Hpy8I	GTNNAC	1 cut(s)	242
HpyAV	CCTTC	3 cut(s)	17, 278, 409
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	4 cut(s)	31, 176, 300, 318
HpyF10VI	GCNNNNNNNGC	2 cut(s)	346, 454
HpySE526I	ACGT	1 cut(s)	165
Hsp92II	CATG	5 cut(s)	136, 254, 314, 380, 415
Kzo9I	GATC	1 cut(s)	247
LguI	GCTCTTC	1 cut(s)	447
LpnPI	CCDG	9 cut(s)	3, 132, 159, 230, 276, 349, 350, 419, 434
Lsp1109I	GCAGC	2 cut(s)	330, 432
LweI	GCATC	1 cut(s)	336
MaeI	CTAG	1 cut(s)	234
MaeII	ACGT	1 cut(s)	165
MaeIII	GTNAC	1 cut(s)	228
MalI	GATC	1 cut(s)	249
MboI	GATC	1 cut(s)	247
MboII	GAAGA	1 cut(s)	464
MlsI	TGGCCA	1 cut(s)	336
MluNI	TGGCCA	1 cut(s)	336
MlyI	GAGTC	1 cut(s)	173
MmeI	TCCRAC	1 cut(s)	308
MnlI	CCTC	8 cut(s)	70, 145, 213, 281, 393, 412, 466, 471
Mox20I	TGGCCA	1 cut(s)	336
MscI	TGGCCA	1 cut(s)	336
Msp20I	TGGCCA	1 cut(s)	336
MwoI	GCNNNNNNNGC	2 cut(s)	346, 454
NdeII	GATC	1 cut(s)	247
NlaIII	CATG	5 cut(s)	136, 254, 314, 380, 415
PaeR7I	CTCGAG	1 cut(s)	358
PciSI	GCTCTTC	1 cut(s)	447
PfeI	GAWTC	1 cut(s)	491
PkrI	GCNGC	2 cut(s)	320, 447
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
Psp1406I	AACGTT	1 cut(s)	165
PspPI	GGNCC	1 cut(s)	136
PspXI	VCTCGAGB	1 cut(s)	358
RsaI	GTAC	3 cut(s)	5, 356, 462
RsaNI	GTAC	3 cut(s)	4, 355, 461
SapI	GCTCTTC	1 cut(s)	447
SatI	GCNGC	2 cut(s)	319, 446
Sau3AI	GATC	1 cut(s)	247
Sau96I	GGNCC	1 cut(s)	136
SchI	GAGTC	1 cut(s)	173
SfaNI	GCATC	1 cut(s)	336
SfcI	CTRYAG	2 cut(s)	322, 405
Sfr274I	CTCGAG	1 cut(s)	358
SinI	GGWCC	1 cut(s)	136
SlaI	CTCGAG	1 cut(s)	358
SmlI	CTYRAG	2 cut(s)	358, 397
SmoI	CTYRAG	2 cut(s)	358, 397
SspMI	CTAG	1 cut(s)	234
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	3 cut(s)	182, 306, 359
TatI	WGTACW	1 cut(s)	460
TfiI	GAWTC	1 cut(s)	491
TseI	GCWGC	2 cut(s)	318, 445
TspDTI	ATGAA	4 cut(s)	393, 428, 429, 483
VpaK11BI	GGWCC	1 cut(s)	136
XhoI	CTCGAG	1 cut(s)	358
XspI	CTAG	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.