Prupe.2G153600_v2.0.a1

SET domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0004439
Physical Location & Seq
Forward (+)
20771510 .. 20779923
8414 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G153600.2

Sequence Viewer

Length: 1728 bp
ATGGCGAGCTCACTAGAAGAGGCCAAGCTCGAGAGGTTCCTCCAATGGTTACAGGTTAATGGAGCGGAGTTACGTGGGTGCAAGATCAACTACTCTGATTCCAGCAAAGGGTTTGGCATTTTTTCGTCTAATGAAGTTTCTGATGGGGTTCTATTAGTTGTTCCTCTGGATTTAGCAATAACTCCAATGAGAGTTTTGCAAGATCCTCTTCTTGGACCAGAATGTAGAGCAATGTTTGAGGAAGGAGATGTAGATGATAGGTTCTTGATGATTTTGTTTCTAACAGTGGAGCGTGTCCGCAAGAATTCTTCTTGGAAGCCGTATCTTGATATGCTTCCGACTACTTTTGGCAATCCACTATGGTTTACTGATGATGAGCTTTTGGAGCTAAAAGGGACAACATTGTATAGAGCAACTGAATTGCAGAAGAAAAGCTTGCGGTCTTTATATGATGGTAAACTGAAGACTCTGGTGGAGAAATTGTTAACTCTGGATGCGGATTTAGAAAGAGATGTGTGCTTTGAAGATTTCCTTTGGGCAAATTCTTTGTTTTGGACCCGTGCTTTAAACATTCCCCTTCCCCATTCCTACGTATTTCCCCAAATTCAAGAAAACAAAAATGATATTGCTTCAGATGGCAAAAATTCTGGGGTTTCTACTACTCATATTTGCATGGAAGAGTTGGTTAATGGAATGGATGAAAAAGGATGTCAGGTTGAAGGGGTTGATATTCAAGTCAATGGAGTGACATCCACATCAAAACAAAAAGAGACTGTTTGGGTGGAGGGTCTTGTTCCTGGCATTGACTTTTGCAACCACGATCTAAAGGCAGCAGCAACGTGGGAAGTTGATGACACTGGATCAACAACTGGAATTCCTTTTTCTATGTACCTTCTTTCTGCTGTCCAACCTTTGCAGATTCAGGGAGAAATTTCTATAAGTTATGGTAACAAAGGAAATGAGGAACTACTTTATCTCTATGGTTTCGTCCTTGATGGTAATCCGGATGACTATCTCATGGTCCATTATCCAATGGAAGCAATTCAAAGTGTTCCCTTCTCTGACCCAAAATCACAGCTTCTTGAAGCACAGAAGGCCGAAATGAGATGTCTGTTACCTAGAAGTTTACTGGATCATGGTTTTTTCCCGGTAGACATCTCAAATAAAGAAGGGGATGATAAGTGCAAACTTGACCATGGTTGTAGCTATAGTTGGAGTGGTCAGCGCAAGATGCCAACATACTTACACAGATTGGTTTTTCCTGAGAACTTCTTGACAGCCTTGAGGACCATAGCCATGCAGGAGGATGAGCTGTTTCAGGTTTCATCTCTGCTGGAAGAGCTTGTAAGATCTGGAGGGGGGAGGCAACCATCTGATTCAGAAGTTCGAGCAGCTGTATGGGAGGCTTGTGGTGATTCCGGAGCTTTGCAATTACTCGTTGATCTTCTTAACGTGAGGTTGACGGATCTTCTAGAATCTTCAGGTACAGAGGACAGCGACACCAATTTGCTTAAAAACGCACATATTGTTGAAAGTGCAAACCAGCATACAGATGAGAACAGTTTAAGTCAAGAGACAAATGGCAGTGGCTCAACACAACAATACAAGTTGATGAGTAGAAACGTGTGGGCTAGTATTGTATATAGAAGAGGGCAGAAGCAACTCACTCGATTATTCCTCAAGGAAGCAGAACACGCCCTGGAATTAGCCCTCAGCGAGGGCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase SET

Protein Analysis

576

Amino Acids

64.46

Weight (kDa)

4.69

Isoelectric Point (pI)

35.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 65
AccI GTMKAC 1 cut(s) 1152
AccIII TCCGGA 2 cut(s) 1003, 1418
AciI CCGC 4 cut(s) 65, 298, 439, 497
AclWI GGATC 4 cut(s) 197, 868, 1140, 1473
AcsI RAATTY 6 cut(s) 304, 541, 603, 643, 873, 930
AcuI CTGAAG 3 cut(s) 482, 615, 1464
AfaI GTAC 2 cut(s) 890, 1486
AfiI CCNNNNNNNGG 3 cut(s) 108, 212, 1717
AflIII ACRYGT 1 cut(s) 1623
AgsI TTSAA 7 cut(s) 524, 608, 719, 734, 1046, 1085, 1532
AjnI CCWGG 2 cut(s) 796, 1698
Alw21I GWGCWC 1 cut(s) 11
Alw26I GTCTC 2 cut(s) 764, 1568
AlwI GGATC 4 cut(s) 197, 868, 1140, 1473
Ama87I CYCGRG 1 cut(s) 29
Aor13HI TCCGGA 2 cut(s) 1003, 1418
AoxI GGCC 2 cut(s) 21, 1095
ApeKI GCWGC 3 cut(s) 830, 833, 1391
ApoI RAATTY 6 cut(s) 304, 541, 603, 643, 873, 930
Asp700I GAANNNNTTC 1 cut(s) 1041
AspLEI GCGC 1 cut(s) 1227
AspS9I GGNCC 4 cut(s) 215, 555, 1021, 1287
AsuC2I CCSGG 1 cut(s) 1148
AsuHPI GGTGA 1 cut(s) 1424
AvaI CYCGRG 1 cut(s) 29
AvaII GGWCC 4 cut(s) 215, 555, 1021, 1287
BanII GRGCYC 1 cut(s) 11
BbsI GAAGAC 1 cut(s) 470
Bbv12I GWGCWC 1 cut(s) 11
BbvCI CCTCAGC 1 cut(s) 1712
BbvI GCAGC 3 cut(s) 842, 845, 1403
BccI CCATC 5 cut(s) 137, 446, 629, 989, 1378
BceAI ACGGC 1 cut(s) 304
BcgI CGANNNNNNTGC 2 cut(s) 1649, 1683
BciT130I CCWGG 2 cut(s) 798, 1700
BcnI CCSGG 1 cut(s) 1148
BcoDI GTCTC 2 cut(s) 764, 1568
BfaI CTAG 4 cut(s) 14, 1119, 1472, 1632
BfmI CTRYAG 1 cut(s) 1207
BglII AGATCT 1 cut(s) 1349
BisI GCNGC 3 cut(s) 831, 834, 1392
BlsI GCNGC 3 cut(s) 832, 835, 1393
Bme1390I CCNGG 3 cut(s) 798, 1148, 1700
Bme18I GGWCC 4 cut(s) 215, 555, 1021, 1287
BmeT110I CYCGRG 1 cut(s) 29
BmgT120I GGNCC 4 cut(s) 215, 555, 1021, 1287
BmiI GGNNCC 2 cut(s) 38, 557
BmrFI CCNGG 3 cut(s) 798, 1148, 1700
BmsI GCATC 2 cut(s) 484, 1221
BpiI GAAGAC 1 cut(s) 470
BpmI CTGGAG 1 cut(s) 1374
Bpu10I CCTNAGC 1 cut(s) 1712
BpuEI CTTGAG 2 cut(s) 1303, 1664
BpuMI CCSGG 1 cut(s) 1148
BsaAI YACGTR 2 cut(s) 74, 592
BsaBI GATNNNNATC 2 cut(s) 999, 1011
BsaJI CCNNGG 2 cut(s) 1195, 1698
BsaWI WCCGGW 2 cut(s) 1003, 1418
BsaXI ACNNNNNCTCC 2 cut(s) 467, 497
Bsc4I CCNNNNNNNGG 3 cut(s) 108, 212, 1717
Bse1I ACTGG 3 cut(s) 862, 874, 1134
Bse3DI GCAATG 1 cut(s) 237
Bse8I GATNNNNATC 2 cut(s) 999, 1011
BseAI TCCGGA 2 cut(s) 1003, 1418
BseBI CCWGG 2 cut(s) 798, 1700
BseDI CCNNGG 2 cut(s) 1195, 1698
BseGI GGATG 7 cut(s) 499, 703, 713, 749, 1012, 1180, 1312
BseJI GATNNNNATC 2 cut(s) 999, 1011
BseLI CCNNNNNNNGG 3 cut(s) 108, 212, 1717
BseMI GCAATG 1 cut(s) 237
BseMII CTCAG 2 cut(s) 1254, 1726
BseNI ACTGG 3 cut(s) 862, 874, 1134
BseXI GCAGC 3 cut(s) 842, 845, 1403
BshFI GGCC 2 cut(s) 23, 1097
BsiHKAI GWGCWC 1 cut(s) 11
BsiHKCI CYCGRG 1 cut(s) 29
BsiSI CCGG 3 cut(s) 1004, 1148, 1419
BslFI GGGAC 1 cut(s) 409
BslI CCNNNNNNNGG 3 cut(s) 108, 212, 1717
BsmAI GTCTC 2 cut(s) 764, 1568
BsmFI GGGAC 1 cut(s) 409
BsnI GGCC 2 cut(s) 23, 1097
BsoBI CYCGRG 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 11
Bsp13I TCCGGA 2 cut(s) 1003, 1418
Bsp143I GATC 8 cut(s) 84, 202, 820, 860, 1132, 1349, 1441, 1465
Bsp19I CCATGG 1 cut(s) 1195
BspACI CCGC 4 cut(s) 65, 298, 439, 497
BspANI GGCC 2 cut(s) 23, 1097
BspCNI CTCAG 2 cut(s) 1255, 1725
BspEI TCCGGA 2 cut(s) 1003, 1418
BspLI GGNNCC 2 cut(s) 38, 557
BspPI GGATC 4 cut(s) 197, 868, 1140, 1473
BspQI GCTCTTC 1 cut(s) 1332
BsrBI CCGCTC 1 cut(s) 65
BsrDI GCAATG 1 cut(s) 237
BsrI ACTGG 3 cut(s) 862, 874, 1134
BssECI CCNNGG 2 cut(s) 1195, 1698
BssMI GATC 8 cut(s) 84, 202, 820, 860, 1132, 1349, 1441, 1465
BssT1I CCWWGG 1 cut(s) 1195
Bst2UI CCWGG 2 cut(s) 798, 1700
Bst4CI ACNGT 3 cut(s) 286, 775, 1562
Bst6I CTCTTC 5 cut(s) 12, 213, 672, 1332, 1642
BstBAI YACGTR 2 cut(s) 74, 592
BstC8I GCNNGC 2 cut(s) 7, 437
BstDEI CTNAG 2 cut(s) 1263, 1712
BstDSI CCRYGG 1 cut(s) 1195
BstENI CCTNNNNNAGG 1 cut(s) 1715
BstF5I GGATG 7 cut(s) 499, 703, 713, 749, 1012, 1180, 1312
BstHHI GCGC 1 cut(s) 1227
BstKTI GATC 8 cut(s) 87, 205, 823, 863, 1135, 1352, 1444, 1468
BstMAI GTCTC 2 cut(s) 764, 1568
BstMBI GATC 8 cut(s) 84, 202, 820, 860, 1132, 1349, 1441, 1465
BstMWI GCNNNNNNNGC 5 cut(s) 385, 1094, 1231, 1339, 1694
BstNI CCWGG 2 cut(s) 798, 1700
BstSCI CCNGG 3 cut(s) 796, 1146, 1698
BstSFI CTRYAG 1 cut(s) 1207
BstSNI TACGTA 1 cut(s) 592
BstV1I GCAGC 3 cut(s) 842, 845, 1403
BstV2I GAAGAC 1 cut(s) 470
BstX2I RGATCY 3 cut(s) 202, 1349, 1465
BstYI RGATCY 3 cut(s) 202, 1349, 1465
BsuRI GGCC 2 cut(s) 23, 1097
BtgI CCRYGG 1 cut(s) 1195
BtsCI GGATG 7 cut(s) 499, 703, 713, 749, 1012, 1180, 1312
BtsI GCAGTG 1 cut(s) 1591
BtsIMutI CAGTG 3 cut(s) 291, 855, 1591
Cac8I GCNNGC 2 cut(s) 7, 437
CfoI GCGC 1 cut(s) 1227
Cfr13I GGNCC 4 cut(s) 215, 555, 1021, 1287
Csp6I GTAC 2 cut(s) 889, 1485
CviAII CATG 5 cut(s) 673, 1018, 1136, 1196, 1297
CviQI GTAC 2 cut(s) 889, 1485
DdeI CTNAG 2 cut(s) 1263, 1712
DpnI GATC 8 cut(s) 86, 204, 822, 862, 1134, 1351, 1443, 1467
DpnII GATC 8 cut(s) 84, 202, 820, 860, 1132, 1349, 1441, 1465
DraI TTTAAA 1 cut(s) 567
Eam1104I CTCTTC 5 cut(s) 12, 213, 672, 1332, 1642
EarI CTCTTC 5 cut(s) 12, 213, 672, 1332, 1642
Ecl136II GAGCTC 1 cut(s) 9
Eco105I TACGTA 1 cut(s) 592
Eco130I CCWWGG 1 cut(s) 1195
Eco24I GRGCYC 1 cut(s) 11
Eco47I GGWCC 4 cut(s) 215, 555, 1021, 1287
Eco53kI GAGCTC 1 cut(s) 9
Eco57I CTGAAG 3 cut(s) 482, 615, 1464
Eco88I CYCGRG 1 cut(s) 29
EcoICRI GAGCTC 1 cut(s) 9
EcoNI CCTNNNNNAGG 1 cut(s) 1715
EcoRI GAATTC 2 cut(s) 304, 873
EcoRII CCWGG 2 cut(s) 796, 1698
EcoT14I CCWWGG 1 cut(s) 1195
EcoT38I GRGCYC 1 cut(s) 11
ErhI CCWWGG 1 cut(s) 1195
FaeI CATG 5 cut(s) 676, 1021, 1139, 1199, 1300
FalI AAGNNNNNCTT 6 cut(s) 192, 224, 419, 451, 516, 548
FaqI GGGAC 1 cut(s) 409
FatI CATG 5 cut(s) 672, 1017, 1135, 1195, 1296
FblI GTMKAC 1 cut(s) 1152
Fnu4HI GCNGC 3 cut(s) 831, 834, 1392
FokI GGATG 7 cut(s) 506, 710, 720, 736, 1019, 1187, 1319
FriOI GRGCYC 1 cut(s) 11
Fsp4HI GCNGC 3 cut(s) 831, 834, 1392
FspBI CTAG 4 cut(s) 14, 1119, 1472, 1632
GlaI GCGC 1 cut(s) 1226
GluI GCNGC 3 cut(s) 831, 834, 1392
GsuI CTGGAG 1 cut(s) 1374
HaeIII GGCC 2 cut(s) 23, 1097
HapII CCGG 3 cut(s) 1004, 1148, 1419
HhaI GCGC 1 cut(s) 1227
Hin1II CATG 5 cut(s) 676, 1021, 1139, 1199, 1300
Hin6I GCGC 1 cut(s) 1225
HinP1I GCGC 1 cut(s) 1225
HincII GTYRAC 2 cut(s) 486, 1461
HindII GTYRAC 2 cut(s) 486, 1461
HindIII AAGCTT 1 cut(s) 433
HinfI GANTC 6 cut(s) 98, 466, 919, 1376, 1415, 1475
HpaI GTTAAC 1 cut(s) 486
HpaII CCGG 3 cut(s) 1004, 1148, 1419
HphI GGTGA 1 cut(s) 1424
Hpy166II GTNNAC 6 cut(s) 366, 458, 486, 1127, 1153, 1461
Hpy188I TCNGA 7 cut(s) 97, 142, 339, 634, 1063, 1375, 1381
Hpy8I GTNNAC 6 cut(s) 366, 458, 486, 1127, 1153, 1461
HpyAV CCTTC 7 cut(s) 236, 587, 713, 902, 1066, 1087, 1163
HpyCH4III ACNGT 3 cut(s) 286, 775, 1562
HpyCH4IV ACGT 5 cut(s) 73, 591, 839, 1452, 1623
HpyF10VI GCNNNNNNNGC 5 cut(s) 385, 1094, 1231, 1339, 1694
HpyF3I CTNAG 2 cut(s) 1263, 1712
HpySE526I ACGT 5 cut(s) 73, 591, 839, 1452, 1623
Hsp92II CATG 5 cut(s) 676, 1021, 1139, 1199, 1300
HspAI GCGC 1 cut(s) 1225
Kpn2I TCCGGA 2 cut(s) 1003, 1418
KspAI GTTAAC 1 cut(s) 486
Kzo9I GATC 8 cut(s) 84, 202, 820, 860, 1132, 1349, 1441, 1465
LguI GCTCTTC 1 cut(s) 1332
LmnI GCTCC 4 cut(s) 62, 289, 385, 1421
Lsp1109I GCAGC 3 cut(s) 842, 845, 1403
LweI GCATC 2 cut(s) 484, 1221
MaeI CTAG 4 cut(s) 14, 1119, 1472, 1632
MaeII ACGT 5 cut(s) 73, 591, 839, 1452, 1623
MaeIII GTNAC 5 cut(s) 48, 69, 745, 947, 1113
MalI GATC 8 cut(s) 86, 204, 822, 862, 1134, 1351, 1443, 1467
MbiI CCGCTC 1 cut(s) 65
MboI GATC 8 cut(s) 84, 202, 820, 860, 1132, 1349, 1441, 1465
MflI RGATCY 3 cut(s) 202, 1349, 1465
MhlI GDGCHC 1 cut(s) 11
MlyI GAGTC 1 cut(s) 460
MmeI TCCRAC 3 cut(s) 362, 931, 1193
MroI TCCGGA 2 cut(s) 1003, 1418
MroXI GAANNNNTTC 1 cut(s) 1041
MseI TTAA 7 cut(s) 57, 485, 566, 687, 1449, 1512, 1565
MslI CAYNNNNRTG 2 cut(s) 1295, 1551
MspA1I CMGCKG 1 cut(s) 1394
MspI CCGG 3 cut(s) 1004, 1148, 1419
MspR9I CCNGG 3 cut(s) 798, 1148, 1700
MvaI CCWGG 2 cut(s) 798, 1700
MwoI GCNNNNNNNGC 5 cut(s) 385, 1094, 1231, 1339, 1694
NciI CCSGG 1 cut(s) 1148
NcoI CCATGG 1 cut(s) 1195
NdeII GATC 8 cut(s) 84, 202, 820, 860, 1132, 1349, 1441, 1465
NlaIII CATG 5 cut(s) 676, 1021, 1139, 1199, 1300
NlaIV GGNNCC 2 cut(s) 38, 557
NmuCI GTSAC 1 cut(s) 745
PaeR7I CTCGAG 1 cut(s) 29
PciSI GCTCTTC 1 cut(s) 1332
PdmI GAANNNNTTC 1 cut(s) 1041
PfeI GAWTC 5 cut(s) 98, 919, 1376, 1415, 1475
PkrI GCNGC 3 cut(s) 832, 835, 1393
PleI GAGTC 1 cut(s) 460
PpsI GAGTC 1 cut(s) 460
Ppu21I YACGTR 2 cut(s) 74, 592
Psp124BI GAGCTC 1 cut(s) 11
Psp6I CCWGG 2 cut(s) 796, 1698
PspGI CCWGG 2 cut(s) 796, 1698
PspN4I GGNNCC 2 cut(s) 38, 557
PspPI GGNCC 4 cut(s) 215, 555, 1021, 1287
PsuI RGATCY 3 cut(s) 202, 1349, 1465
PvuII CAGCTG 1 cut(s) 1394
RsaI GTAC 2 cut(s) 890, 1486
RsaNI GTAC 2 cut(s) 889, 1485
RseI CAYNNNNRTG 2 cut(s) 1295, 1551
SacI GAGCTC 1 cut(s) 11
SapI GCTCTTC 1 cut(s) 1332
SaqAI TTAA 7 cut(s) 57, 485, 566, 687, 1449, 1512, 1565
SatI GCNGC 3 cut(s) 831, 834, 1392
Sau3AI GATC 8 cut(s) 84, 202, 820, 860, 1132, 1349, 1441, 1465
Sau96I GGNCC 4 cut(s) 215, 555, 1021, 1287
SchI GAGTC 1 cut(s) 460
ScrFI CCNGG 3 cut(s) 798, 1148, 1700
SduI GDGCHC 1 cut(s) 11
SfaNI GCATC 2 cut(s) 484, 1221
SfcI CTRYAG 1 cut(s) 1207
Sfr274I CTCGAG 1 cut(s) 29
SinI GGWCC 4 cut(s) 215, 555, 1021, 1287
SlaI CTCGAG 1 cut(s) 29
SmiMI CAYNNNNRTG 2 cut(s) 1295, 1551
SmlI CTYRAG 3 cut(s) 29, 1282, 1679
SmoI CTYRAG 3 cut(s) 29, 1282, 1679
SnaBI TACGTA 1 cut(s) 592
SsiI CCGC 4 cut(s) 65, 298, 439, 497
SspMI CTAG 4 cut(s) 14, 1119, 1472, 1632
SstI GAGCTC 1 cut(s) 11
StyD4I CCNGG 3 cut(s) 796, 1146, 1698
StyI CCWWGG 1 cut(s) 1195
TaaI ACNGT 3 cut(s) 286, 775, 1562
TaiI ACGT 5 cut(s) 76, 594, 842, 1455, 1626
TaqI TCGA 3 cut(s) 30, 1387, 1669
TfiI GAWTC 5 cut(s) 98, 919, 1376, 1415, 1475
Tru1I TTAA 7 cut(s) 57, 485, 566, 687, 1449, 1512, 1565
Tru9I TTAA 7 cut(s) 57, 485, 566, 687, 1449, 1512, 1565
TscAI CASTG 3 cut(s) 291, 862, 1591
TseFI GTSAC 1 cut(s) 745
TseI GCWGC 3 cut(s) 830, 833, 1391
Tsp45I GTSAC 1 cut(s) 745
TspDTI ATGAA 3 cut(s) 147, 714, 1314
TspGWI ACGGA 1 cut(s) 1478
TspRI CASTG 3 cut(s) 291, 862, 1591
VpaK11BI GGWCC 4 cut(s) 215, 555, 1021, 1287
XagI CCTNNNNNAGG 1 cut(s) 1715
XapI RAATTY 6 cut(s) 304, 541, 603, 643, 873, 930
XbaI TCTAGA 1 cut(s) 1471
XhoI CTCGAG 1 cut(s) 29
XmiI GTMKAC 1 cut(s) 1152
XmnI GAANNNNTTC 1 cut(s) 1041
XspI CTAG 4 cut(s) 14, 1119, 1472, 1632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.