Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004439

Physical Location & Seq

Genomic Coordinates Reverse (-)

23761427 .. 23768995

Gene Structure 7569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00303330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1620 bp

ATGGGATGCCGTCCTAGTACAAAACCACAAGGGAAGAAACTTGGAAACCATTTTCTGCAAGCCTCGCATAGGGTTAATGGGGTGGAGCTACGTGGGTGCAAGATCAAATACTCTGATTCTGATAAAGGGTTTGGCATTTTTGCGGCTAATGATGTTTCTGATGGGGTTCTATTAGTCGTGCCTCTGGATTTAGCAATAACTCCTATGAGAGTTTTGCAAGATCCTTTTTTTGGACCAGAATGTAGAGCAATGTTCGAAGAAGGAGATGTAGATGATAGGTTCTTGATGGTTTTGTTTCTAACAGTGGAGCGCCTCCGCAAGAATTCTTCTTGGAAGCCGTACCTTGATATGCTTCCCACCACTTTTGGCAATCCGCTTTGGTTTACTGATGATGAGCTTTTGGAGCTAAAAGGAACAACATTGTACCGAGCAACTGAACTGCAGAAGAAAAGCTTGCGGTCTTTATATGATGATAAATTGAAGGCTCTGGTGGATAAACTTTTAACTCTTGATGGTGATTCGGAAAGGGATGTGTGCTTTGAAGATTTCCTTTGGGCAAATTCTGTATTTTGGGCTCGTGCTTTGAACATTCCCCTTCCATACTCTTATGTATTTCCACAAGTTGAGGAAAAGAAGAATTGCAGTGCTACAAATGACAAAAGTTCTGACGATTCTACTAATATGGTTAATGGCAATGGTAAAGAATGTCAGGTTGACGGGGTTGATGTTCAAGTTAATGGAGTGACATCTGTATCAAAACAAAAAGATACTGTCTGGGTGGAGGGTCTTGTTTCTGGCATTGATTTTTGCAACCATGGTTTAAAGCCGGCAGCAACTTGGGAAGTTGATGGAACAGGATCGATAACTCGAGTTCCTTTTTCTATGTATCTTCTTTCTGCTGGACAACCCTTGGAGACTGATGAAGAAATTTCTGTAAGTTATGGTAACAAAGGAAATGAGGAATTACTTCATCTGTACGGTTTCGTCCTTGATGGTAATCCAGATGACTATCTCATGGTCCATTATCCGGTACAAGCCCTTCAAAGTGTTTCATTTTCCGACTCAAAAGCACAGCTTCTTGAAGCGCAGAAGGCCGAAATGAGGTGTCTCTTACCTAGAAGTTTACTCGATCATGGCTTTTTCCCAGTAGACATCTCAACTAATGAAGGAAGTGATGAGGGCCAACTCAACCATGTTTGCAGCTATAGTTGGAGTGGTCAGCGCAAGATGCCATCATATTTAAACAAGTTGGTTTTTCCCGAAAGCTTTTTGACAACTTTGAGGACCGTAGCCATGAAGAAGGATGAGCTGTTTCAGGTTTCATCATTGCTGGAAGAGCTTGTTACGTCTGGAGGGGGCAGGCAACCATCTGATTCAGAAGTTCGAGCAGCAATATGGGAGGCTTGTGGTGACTCCGGAGCTTTGCAAATGCTTGTTGATCTTCTTACTATGAGGATGGTGGATCTTCAAGATGATTCTGGTACAGAGGACAGTGACACTAATTTGCTTAAAAACGCACGCTTTAGTGGAAGCCCAAATCTGCATACAGGAAATGAAAACGATTTAAGAGATAAATGGCCTTCAACCACCCCAATCGATGAGCAGAAACAAGTGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase SET

Protein Analysis

539

Amino Acids

60.07

Weight (kDa)

4.73

Isoelectric Point (pI)

32.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01920 AT1G01920 AT1G01920 AT1G01920 AT1G01920
fragaria_vesca	FvH4_7g12930 FvH4_7g12930 FvH4_7g12930 FvH4_7g12930 FvH4_7g12930 FvH4_7g12930 FvH4_7g12930
malus_domestica	MD02G1195100.v1.1
prunus_persica	Prupe.2G153600_v2.0.a1 Prupe.2G153600_v2.0.a1 Prupe.2G153600_v2.0.a1
pyrus_communis	pycom02g15890 pycom07g11920
rosa_chinensis	RchiOBHm_Chr1g0352061
rosa_laevigata	RLG00000028363
rosa_roxburghii	Rroxscaffold_1G00063100 Rroxscaffold_4G00303300 Rroxscaffold_4G00303330 Rroxscaffold_4G00326370 Rroxscaffold_5G00366830
rosa_rugosa	Rorug01G0223700 Rorug01G0223700
rosa_samantha	Rh1AG238300 Rh1BG208700 Rh1CG222700 Rh1DG235100
rosa_wichuraiana	Rw1G020700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1149
AccIII	TCCGGA	1 cut(s)	1415
AciI	CCGC	4 cut(s)	143, 316, 374, 457
AclWI	GGATC	3 cut(s)	215, 865, 1470
AcsI	RAATTY	3 cut(s)	322, 559, 927
AfaI	GTAC	6 cut(s)	19, 341, 425, 977, 1032, 1483
AfiI	CCNNNNNNNGG	4 cut(s)	69, 230, 1027, 1101
AgsI	TTSAA	8 cut(s)	481, 542, 586, 731, 1043, 1082, 1469, 1584
Alw26I	GTCTC	2 cut(s)	908, 1112
AlwI	GGATC	3 cut(s)	215, 865, 1470
Ama87I	CYCGRG	1 cut(s)	867
Aor13HI	TCCGGA	1 cut(s)	1415
AoxI	GGCC	3 cut(s)	1092, 1180, 1577
ApeKI	GCWGC	3 cut(s)	830, 1200, 1388
ApoI	RAATTY	3 cut(s)	322, 559, 927
Asp700I	GAANNNNTTC	1 cut(s)	966
AspLEI	GCGC	3 cut(s)	312, 1087, 1224
AspS9I	GGNCC	4 cut(s)	233, 1018, 1180, 1284
AsuHPI	GGTGA	2 cut(s)	527, 1421
AsuII	TTCGAA	1 cut(s)	255
AvaI	CYCGRG	1 cut(s)	867
AvaII	GGWCC	3 cut(s)	233, 1018, 1284
BaeI	ACNNNNGTAYC	2 cut(s)	735, 768
BanII	GRGCYC	1 cut(s)	577
BarI	GAAGNNNNNNTAC	2 cut(s)	1023, 1055
BauI	CACGAG	1 cut(s)	576
BbvI	GCAGC	3 cut(s)	842, 1212, 1400
BccI	CCATC	8 cut(s)	155, 280, 506, 842, 986, 1240, 1375, 1450
BceAI	ACGGC	1 cut(s)	322
BcoDI	GTCTC	2 cut(s)	908, 1112
BfaI	CTAG	3 cut(s)	15, 1116, 1618
BfmI	CTRYAG	2 cut(s)	440, 1204
BfoI	RGCGCY	1 cut(s)	313
BisI	GCNGC	4 cut(s)	144, 831, 1201, 1389
BlsI	GCNGC	4 cut(s)	145, 832, 1202, 1390
Bme18I	GGWCC	3 cut(s)	233, 1018, 1284
BmeT110I	CYCGRG	1 cut(s)	867
BmgT120I	GGNCC	4 cut(s)	233, 1018, 1180, 1284
BmrI	ACTGGG	1 cut(s)	1139
BmsI	GCATC	1 cut(s)	1218
BmuI	ACTGGG	1 cut(s)	1139
BpmI	CTGGAG	1 cut(s)	1371
Bpu14I	TTCGAA	1 cut(s)	255
Bsa29I	ATCGAT	2 cut(s)	860, 1596
BsaAI	YACGTR	1 cut(s)	92
BsaBI	GATNNNNATC	2 cut(s)	996, 1008
BsaJI	CCNNGG	2 cut(s)	814, 909
BsaWI	WCCGGW	2 cut(s)	1027, 1415
Bsc4I	CCNNNNNNNGG	4 cut(s)	69, 230, 1027, 1101
Bse118I	RCCGGY	1 cut(s)	826
Bse1I	ACTGG	1 cut(s)	1145
Bse3DI	GCAATG	3 cut(s)	255, 700, 1325
Bse8I	GATNNNNATC	2 cut(s)	996, 1008
BseAI	TCCGGA	1 cut(s)	1415
BseCI	ATCGAT	2 cut(s)	860, 1596
BseDI	CCNNGG	2 cut(s)	814, 909
BseGI	GGATG	4 cut(s)	11, 535, 1309, 1461
BseJI	GATNNNNATC	2 cut(s)	996, 1008
BseLI	CCNNNNNNNGG	4 cut(s)	69, 230, 1027, 1101
BseMI	GCAATG	3 cut(s)	255, 700, 1325
BseNI	ACTGG	1 cut(s)	1145
BseXI	GCAGC	3 cut(s)	842, 1212, 1400
BshFI	GGCC	3 cut(s)	1094, 1182, 1579
BshVI	ATCGAT	2 cut(s)	860, 1596
BsiHKCI	CYCGRG	1 cut(s)	867
BsiSI	CCGG	3 cut(s)	827, 1028, 1416
BslI	CCNNNNNNNGG	4 cut(s)	69, 230, 1027, 1101
BsmAI	GTCTC	2 cut(s)	908, 1112
BsnI	GGCC	3 cut(s)	1094, 1182, 1579
BsoBI	CYCGRG	1 cut(s)	867
Bsp119I	TTCGAA	1 cut(s)	255
Bsp1286I	GDGCHC	1 cut(s)	577
Bsp13I	TCCGGA	1 cut(s)	1415
Bsp143I	GATC	6 cut(s)	102, 220, 857, 1129, 1438, 1462
Bsp19I	CCATGG	1 cut(s)	814
BspACI	CCGC	4 cut(s)	143, 316, 374, 457
BspANI	GGCC	3 cut(s)	1094, 1182, 1579
BspDI	ATCGAT	2 cut(s)	860, 1596
BspEI	TCCGGA	1 cut(s)	1415
BspMAI	CTGCAG	1 cut(s)	444
BspPI	GGATC	3 cut(s)	215, 865, 1470
BspQI	GCTCTTC	1 cut(s)	1329
BspT104I	TTCGAA	1 cut(s)	255
BsrDI	GCAATG	3 cut(s)	255, 700, 1325
BsrFI	RCCGGY	1 cut(s)	826
BsrI	ACTGG	1 cut(s)	1145
BssAI	RCCGGY	1 cut(s)	826
BssECI	CCNNGG	2 cut(s)	814, 909
BssMI	GATC	6 cut(s)	102, 220, 857, 1129, 1438, 1462
BssSI	CACGAG	1 cut(s)	576
BssT1I	CCWWGG	2 cut(s)	814, 909
Bst2BI	CACGAG	1 cut(s)	576
Bst4CI	ACNGT	5 cut(s)	304, 772, 980, 1288, 1493
Bst6I	CTCTTC	1 cut(s)	1329
BstBAI	YACGTR	1 cut(s)	92
BstBI	TTCGAA	1 cut(s)	255
BstC8I	GCNNGC	5 cut(s)	60, 455, 828, 1361, 1519
BstDSI	CCRYGG	1 cut(s)	814
BstENI	CCTNNNNNAGG	1 cut(s)	67
BstF5I	GGATG	4 cut(s)	11, 535, 1309, 1461
BstH2I	RGCGCY	1 cut(s)	313
BstHHI	GCGC	3 cut(s)	312, 1087, 1224
BstKTI	GATC	6 cut(s)	105, 223, 860, 1132, 1441, 1465
BstMAI	GTCTC	2 cut(s)	908, 1112
BstMBI	GATC	6 cut(s)	102, 220, 857, 1129, 1438, 1462
BstMWI	GCNNNNNNNGC	5 cut(s)	64, 403, 1091, 1228, 1336
BstSFI	CTRYAG	2 cut(s)	440, 1204
BstV1I	GCAGC	3 cut(s)	842, 1212, 1400
BstX2I	RGATCY	2 cut(s)	220, 1462
BstYI	RGATCY	2 cut(s)	220, 1462
Bsu15I	ATCGAT	2 cut(s)	860, 1596
BsuRI	GGCC	3 cut(s)	1094, 1182, 1579
BsuTUI	ATCGAT	2 cut(s)	860, 1596
BtgI	CCRYGG	1 cut(s)	814
BtsCI	GGATG	4 cut(s)	11, 535, 1309, 1461
BtsI	GCAGTG	1 cut(s)	649
BtsIMutI	CAGTG	3 cut(s)	309, 649, 1498
Cac8I	GCNNGC	5 cut(s)	60, 455, 828, 1361, 1519
CfoI	GCGC	3 cut(s)	312, 1087, 1224
Cfr10I	RCCGGY	1 cut(s)	826
Cfr13I	GGNCC	4 cut(s)	233, 1018, 1180, 1284
ClaI	ATCGAT	2 cut(s)	860, 1596
Csp6I	GTAC	6 cut(s)	18, 340, 424, 976, 1031, 1482
CspCI	CAANNNNNGTGG	2 cut(s)	346, 381
CviAII	CATG	5 cut(s)	815, 1015, 1133, 1193, 1294
CviQI	GTAC	6 cut(s)	18, 340, 424, 976, 1031, 1482
DpnI	GATC	6 cut(s)	104, 222, 859, 1131, 1440, 1464
DpnII	GATC	6 cut(s)	102, 220, 857, 1129, 1438, 1462
DraI	TTTAAA	2 cut(s)	822, 1242
Eam1104I	CTCTTC	1 cut(s)	1329
EarI	CTCTTC	1 cut(s)	1329
Eco130I	CCWWGG	2 cut(s)	814, 909
Eco24I	GRGCYC	1 cut(s)	577
Eco47I	GGWCC	3 cut(s)	233, 1018, 1284
Eco88I	CYCGRG	1 cut(s)	867
EcoNI	CCTNNNNNAGG	1 cut(s)	67
EcoRI	GAATTC	1 cut(s)	322
EcoT14I	CCWWGG	2 cut(s)	814, 909
EcoT38I	GRGCYC	1 cut(s)	577
ErhI	CCWWGG	2 cut(s)	814, 909
FaeI	CATG	5 cut(s)	818, 1018, 1136, 1196, 1297
FalI	AAGNNNNNCTT	6 cut(s)	437, 469, 534, 566, 1059, 1091
FatI	CATG	5 cut(s)	814, 1014, 1132, 1192, 1293
FblI	GTMKAC	1 cut(s)	1149
Fnu4HI	GCNGC	4 cut(s)	144, 831, 1201, 1389
FokI	GGATG	4 cut(s)	18, 542, 1316, 1468
FriOI	GRGCYC	1 cut(s)	577
Fsp4HI	GCNGC	4 cut(s)	144, 831, 1201, 1389
FspBI	CTAG	3 cut(s)	15, 1116, 1618
GlaI	GCGC	3 cut(s)	311, 1086, 1223
GluI	GCNGC	4 cut(s)	144, 831, 1201, 1389
GsuI	CTGGAG	1 cut(s)	1371
HaeII	RGCGCY	1 cut(s)	313
HaeIII	GGCC	3 cut(s)	1094, 1182, 1579
HapII	CCGG	3 cut(s)	827, 1028, 1416
HhaI	GCGC	3 cut(s)	312, 1087, 1224
Hin1II	CATG	5 cut(s)	818, 1018, 1136, 1196, 1297
Hin6I	GCGC	3 cut(s)	310, 1085, 1222
HinP1I	GCGC	3 cut(s)	310, 1085, 1222
HincII	GTYRAC	1 cut(s)	715
HindII	GTYRAC	1 cut(s)	715
HindIII	AAGCTT	2 cut(s)	451, 1264
HinfI	GANTC	7 cut(s)	116, 518, 671, 1061, 1373, 1412, 1475
HpaII	CCGG	3 cut(s)	827, 1028, 1416
HphI	GGTGA	2 cut(s)	527, 1421
Hpy166II	GTNNAC	4 cut(s)	384, 715, 1124, 1150
Hpy188I	TCNGA	8 cut(s)	115, 121, 160, 523, 667, 1060, 1372, 1378
Hpy188III	TCNNGA	9 cut(s)	185, 283, 509, 1001, 1079, 1259, 1350, 1416, 1469
Hpy8I	GTNNAC	4 cut(s)	384, 715, 1124, 1150
HpyAV	CCTTC	8 cut(s)	254, 475, 605, 1049, 1084, 1160, 1294, 1590
HpyCH4III	ACNGT	5 cut(s)	304, 772, 980, 1288, 1493
HpyCH4IV	ACGT	2 cut(s)	91, 1346
HpyCH4V	TGCA	9 cut(s)	58, 99, 217, 442, 642, 810, 1200, 1426, 1543
HpyF10VI	GCNNNNNNNGC	5 cut(s)	64, 403, 1091, 1228, 1336
HpySE526I	ACGT	2 cut(s)	91, 1346
Hsp92II	CATG	5 cut(s)	818, 1018, 1136, 1196, 1297
HspAI	GCGC	3 cut(s)	310, 1085, 1222
Kpn2I	TCCGGA	1 cut(s)	1415
KroI	GCCGGC	1 cut(s)	826
KroNI	GCCGGC	1 cut(s)	828
Kzo9I	GATC	6 cut(s)	102, 220, 857, 1129, 1438, 1462
LguI	GCTCTTC	1 cut(s)	1329
LmnI	GCTCC	4 cut(s)	85, 307, 403, 1418
Lsp1109I	GCAGC	3 cut(s)	842, 1212, 1400
LweI	GCATC	1 cut(s)	1218
MaeI	CTAG	3 cut(s)	15, 1116, 1618
MaeII	ACGT	2 cut(s)	91, 1346
MaeIII	GTNAC	5 cut(s)	742, 944, 1342, 1409, 1493
MalI	GATC	6 cut(s)	104, 222, 859, 1131, 1440, 1464
MboI	GATC	6 cut(s)	102, 220, 857, 1129, 1438, 1462
MflI	RGATCY	2 cut(s)	220, 1462
MhlI	GDGCHC	1 cut(s)	577
MluCI	AATT	7 cut(s)	322, 476, 559, 637, 927, 962, 1501
MlyI	GAGTC	2 cut(s)	1055, 1406
MmeI	TCCRAC	2 cut(s)	1083, 1190
MroI	TCCGGA	1 cut(s)	1415
MroNI	GCCGGC	1 cut(s)	826
MroXI	GAANNNNTTC	1 cut(s)	966
MseI	TTAA	8 cut(s)	75, 503, 687, 735, 821, 1241, 1509, 1565
MspI	CCGG	3 cut(s)	827, 1028, 1416
MwoI	GCNNNNNNNGC	5 cut(s)	64, 403, 1091, 1228, 1336
NaeI	GCCGGC	1 cut(s)	828
NcoI	CCATGG	1 cut(s)	814
NdeII	GATC	6 cut(s)	102, 220, 857, 1129, 1438, 1462
NgoMIV	GCCGGC	1 cut(s)	826
NlaIII	CATG	5 cut(s)	818, 1018, 1136, 1196, 1297
NmuCI	GTSAC	3 cut(s)	742, 1409, 1493
NspV	TTCGAA	1 cut(s)	255
PaeR7I	CTCGAG	1 cut(s)	867
PciSI	GCTCTTC	1 cut(s)	1329
PdiI	GCCGGC	1 cut(s)	828
PdmI	GAANNNNTTC	1 cut(s)	966
PfeI	GAWTC	5 cut(s)	116, 518, 671, 1373, 1475
PkrI	GCNGC	4 cut(s)	145, 832, 1202, 1390
PleI	GAGTC	2 cut(s)	1055, 1406
PpsI	GAGTC	2 cut(s)	1055, 1406
Ppu21I	YACGTR	1 cut(s)	92
PspPI	GGNCC	4 cut(s)	233, 1018, 1180, 1284
PspXI	VCTCGAGB	1 cut(s)	867
PstI	CTGCAG	1 cut(s)	444
PsuI	RGATCY	2 cut(s)	220, 1462
RsaI	GTAC	6 cut(s)	19, 341, 425, 977, 1032, 1483
RsaNI	GTAC	6 cut(s)	18, 340, 424, 976, 1031, 1482
SapI	GCTCTTC	1 cut(s)	1329
SaqAI	TTAA	8 cut(s)	75, 503, 687, 735, 821, 1241, 1509, 1565
SatI	GCNGC	4 cut(s)	144, 831, 1201, 1389
Sau3AI	GATC	6 cut(s)	102, 220, 857, 1129, 1438, 1462
Sau96I	GGNCC	4 cut(s)	233, 1018, 1180, 1284
SchI	GAGTC	2 cut(s)	1055, 1406
SduI	GDGCHC	1 cut(s)	577
SfaNI	GCATC	1 cut(s)	1218
SfcI	CTRYAG	2 cut(s)	440, 1204
Sfr274I	CTCGAG	1 cut(s)	867
SfuI	TTCGAA	1 cut(s)	255
SinI	GGWCC	3 cut(s)	233, 1018, 1284
SlaI	CTCGAG	1 cut(s)	867
SmlI	CTYRAG	1 cut(s)	867
SmoI	CTYRAG	1 cut(s)	867
Sse9I	AATT	7 cut(s)	322, 476, 559, 637, 927, 962, 1501
SsiI	CCGC	4 cut(s)	143, 316, 374, 457
SspMI	CTAG	3 cut(s)	15, 1116, 1618
StyI	CCWWGG	2 cut(s)	814, 909
TaaI	ACNGT	5 cut(s)	304, 772, 980, 1288, 1493
TaiI	ACGT	2 cut(s)	94, 1349
TaqI	TCGA	6 cut(s)	255, 860, 868, 1128, 1384, 1596
TasI	AATT	7 cut(s)	322, 476, 559, 637, 927, 962, 1501
TatI	WGTACW	1 cut(s)	17
TauI	GCSGC	1 cut(s)	146
TfiI	GAWTC	5 cut(s)	116, 518, 671, 1373, 1475
Tru1I	TTAA	8 cut(s)	75, 503, 687, 735, 821, 1241, 1509, 1565
Tru9I	TTAA	8 cut(s)	75, 503, 687, 735, 821, 1241, 1509, 1565
TscAI	CASTG	3 cut(s)	309, 649, 1498
TseFI	GTSAC	3 cut(s)	742, 1409, 1493
TseI	GCWGC	3 cut(s)	830, 1200, 1388
Tsp45I	GTSAC	3 cut(s)	742, 1409, 1493
TspDTI	ATGAA	7 cut(s)	936, 959, 1041, 1179, 1310, 1311, 1569
TspRI	CASTG	3 cut(s)	309, 649, 1498
VpaK11BI	GGWCC	3 cut(s)	233, 1018, 1284
XagI	CCTNNNNNAGG	1 cut(s)	67
XapI	RAATTY	3 cut(s)	322, 559, 927
XhoI	CTCGAG	1 cut(s)	867
XmiI	GTMKAC	1 cut(s)	1149
XmnI	GAANNNNTTC	1 cut(s)	966
XspI	CTAG	3 cut(s)	15, 1116, 1618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.