Rw1G020700

SET domain

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
44358325 .. 44364519
6195 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G020700.1

Sequence Viewer

Length: 1701 bp
ATGGCGAGTTCACAAGGAGACGCGAAGCTCGAACGGTTTCTGCAGTGGTTACAGGTTAATGGGGTGGAGCTACGTGGGTGCAAGATCAAATACTCTGATTCTGATAAAGGGTTTGGCATTTTTGCGGCTAAGGATGTTTCTGATGGGGTTCTGTTAGTCGTGCCTCTGGATTTAGCAATAACTCCTATGAGAGTTTTGCAAGATCCTTTTTTTGGACCAGAATGTAGAGCAATGTTCGAAGAAGGAGATGTAGATGATAGGTTCTTGATGGTTTTGTTTCTAACAGTGGAACGCCTCCGCAAGAATTCTTCTTGGAAGCCGTACCTTGATATGCTTCCCACCACTTTTGGCAATCCGCTTTGGTTTACTGATGATGAGCTTTTGGAGCTAAAAGGAACAACATTGTACCGAGCAACTGAACTGCAGAAGAAAAGCTTGCGGTCTTTATATGATGATAAATTGAAGGCTCTGGTGGATAAACTTTTAACTCTTGATGGTGATTCGGAAAGGGATGTGTGCTTTGAAGATTTCCTTTGGGCAAATTCTGTATTTTGGGCTCGTGCTTTGAACATTCCCCTTCCATACTCTTATGTATTTCCACAAGTTGAGGAAAAGAAGAATTGCAGTGCTTCAAATGACAAAAGTTCTGACGATTCTACTAATATGGTTAATGGCAATGGTAAAGGATGTCAGGTTGACGGGGTTGATATTCAAGTTAACGGAGTGACATCTGTATCAGAACAAAAAGATACTGTCTGGGTGGAGGGTCTTGTTCCTGGCATCGATTTTTGCAACCATGGTTTAAAGCCAGCAGCAACTTGGGAAGTTGATGGAACAGGATCGATAACTCGGGTCCCTTTTTCTATGTATCTTCTTTCTGCTGGACAACCCTTGGAGACTGATGAAGAAATTTCTATAAGTTATGGTAACAAAGGAAATGAGGAATTACTTCATCTGTATGGTTTCGTCCTTGATGGTAATCCAGATGACTATCTCATGGTCCATTATCCAGTACAAGCCCTTCAAAGTGTTTCATTTTCTGACTCGAAAGCACAGCTTCTTGAAGCACAGAAGGCCGAGATGAGGTGTCTCTTACCTAGAAGTTTACTGGATCATGGCTTTTTCCCAGTAGGCATCTCAACTAATGAAGAAAGTGATAAGGGCCAACTCAACCATGTTTGCAGCTATAGTTGGAGTGGTCAGCGCAAGATGCCATCATATTTAAACAAGTTGGTTTTTCCCGAAAGCTTTTTGACAACTTTGAGGACCGTAGCCATGAAGGAGGATGAGCTGTTTCAGGTTTCATCATTGCTGGAAGAGCTTGTTACATCTGGAGGGGGCAGGCAACCATCTGATTCAGAAGTTCGAGCAGCAATATGGGAGGCTTGTGGTGACTCCGGAGCTTTGCAAATGCTTGTTGATCTTCTTACTATGAGGATGGTGGATCTTCAAGATGGTTCTGGTACAGAGGACAATGACACTAATTTGCTTAAAAACGCAGGCTTTAGTGAAAGCCCAAATCTGCATACAGGAAATGAAAACGATTTAAGTGAAGAGATAAATGGCCTTCAACCACCCCAATCGATGAGCAGAAACAAGTGGTCGAGTATAGTTTATAGACGAGGGCAGAAGCAACTAACTCGATTATTCCTCAAGGAAGCAGAGTATGCCTTGCAATTAGCTCTGGATGAAGGGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

566

Amino Acids

63.19

Weight (kDa)

4.61

Isoelectric Point (pI)

39.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 23
AccIII TCCGGA 1 cut(s) 1397
AciI CCGC 4 cut(s) 125, 298, 356, 439
AclWI GGATC 4 cut(s) 197, 847, 1119, 1452
AcsI RAATTY 3 cut(s) 304, 541, 909
AfaI GTAC 4 cut(s) 323, 407, 1014, 1465
AfiI CCNNNNNNNGG 2 cut(s) 212, 1083
AgsI TTSAA 9 cut(s) 463, 524, 568, 633, 713, 1025, 1064, 1451, 1571
AjnI CCWGG 1 cut(s) 775
Alw26I GTCTC 3 cut(s) 12, 890, 1094
AlwI GGATC 4 cut(s) 197, 847, 1119, 1452
Ama87I CYCGRG 1 cut(s) 849
Aor13HI TCCGGA 1 cut(s) 1397
AoxI GGCC 3 cut(s) 1074, 1162, 1564
ApeKI GCWGC 3 cut(s) 812, 1182, 1370
ApoI RAATTY 3 cut(s) 304, 541, 909
Asp700I GAANNNNTTC 2 cut(s) 36, 948
AspLEI GCGC 1 cut(s) 1206
AspS9I GGNCC 5 cut(s) 215, 853, 1000, 1162, 1266
AsuHPI GGTGA 2 cut(s) 509, 1403
AsuII TTCGAA 1 cut(s) 237
AvaI CYCGRG 1 cut(s) 849
AvaII GGWCC 4 cut(s) 215, 853, 1000, 1266
BaeI ACNNNNGTAYC 2 cut(s) 717, 750
BanII GRGCYC 1 cut(s) 559
BarI GAAGNNNNNNTAC 2 cut(s) 1005, 1037
BauI CACGAG 1 cut(s) 558
BbvI GCAGC 3 cut(s) 824, 1194, 1382
BccI CCATC 9 cut(s) 137, 262, 488, 824, 968, 1222, 1357, 1432, 1448
BceAI ACGGC 1 cut(s) 304
BcgI CGANNNNNNTGC 2 cut(s) 1622, 1656
BciT130I CCWGG 1 cut(s) 777
BcoDI GTCTC 3 cut(s) 12, 890, 1094
BfaI CTAG 1 cut(s) 1098
BfmI CTRYAG 3 cut(s) 41, 422, 1186
BisI GCNGC 4 cut(s) 126, 813, 1183, 1371
BlsI GCNGC 4 cut(s) 127, 814, 1184, 1372
Bme1390I CCNGG 1 cut(s) 777
Bme18I GGWCC 4 cut(s) 215, 853, 1000, 1266
BmeT110I CYCGRG 1 cut(s) 849
BmgT120I GGNCC 5 cut(s) 215, 853, 1000, 1162, 1266
BmiI GGNNCC 2 cut(s) 854, 855
BmrFI CCNGG 1 cut(s) 777
BmrI ACTGGG 1 cut(s) 1121
BmsI GCATC 3 cut(s) 789, 1143, 1200
BmuI ACTGGG 1 cut(s) 1121
BpmI CTGGAG 1 cut(s) 1353
Bpu10I CCTNAGC 1 cut(s) 129
Bpu14I TTCGAA 1 cut(s) 237
BpuEI CTTGAG 1 cut(s) 1637
Bsa29I ATCGAT 3 cut(s) 783, 842, 1583
BsaAI YACGTR 1 cut(s) 74
BsaBI GATNNNNATC 2 cut(s) 978, 990
BsaJI CCNNGG 2 cut(s) 796, 891
BsaWI WCCGGW 1 cut(s) 1397
Bsc4I CCNNNNNNNGG 2 cut(s) 212, 1083
Bse1I ACTGG 3 cut(s) 1010, 1113, 1127
Bse3DI GCAATG 3 cut(s) 237, 682, 1307
Bse8I GATNNNNATC 2 cut(s) 978, 990
BseAI TCCGGA 1 cut(s) 1397
BseBI CCWGG 1 cut(s) 777
BseCI ATCGAT 3 cut(s) 783, 842, 1583
BseDI CCNNGG 2 cut(s) 796, 891
BseGI GGATG 6 cut(s) 139, 517, 692, 1291, 1443, 1693
BseJI GATNNNNATC 2 cut(s) 978, 990
BseLI CCNNNNNNNGG 2 cut(s) 212, 1083
BseMI GCAATG 3 cut(s) 237, 682, 1307
BseNI ACTGG 3 cut(s) 1010, 1113, 1127
BseXI GCAGC 3 cut(s) 824, 1194, 1382
Bsh1236I CGCG 1 cut(s) 23
BshFI GGCC 3 cut(s) 1076, 1164, 1566
BshVI ATCGAT 3 cut(s) 783, 842, 1583
BsiHKCI CYCGRG 1 cut(s) 849
BsiSI CCGG 1 cut(s) 1398
BslFI GGGAC 1 cut(s) 839
BslI CCNNNNNNNGG 2 cut(s) 212, 1083
BsmAI GTCTC 3 cut(s) 12, 890, 1094
BsmBI CGTCTC 1 cut(s) 12
BsmFI GGGAC 1 cut(s) 839
BsnI GGCC 3 cut(s) 1076, 1164, 1566
BsoBI CYCGRG 1 cut(s) 849
Bsp119I TTCGAA 1 cut(s) 237
Bsp1286I GDGCHC 1 cut(s) 559
Bsp13I TCCGGA 1 cut(s) 1397
Bsp143I GATC 6 cut(s) 84, 202, 839, 1111, 1420, 1444
Bsp19I CCATGG 1 cut(s) 796
BspACI CCGC 4 cut(s) 125, 298, 356, 439
BspANI GGCC 3 cut(s) 1076, 1164, 1566
BspDI ATCGAT 3 cut(s) 783, 842, 1583
BspEI TCCGGA 1 cut(s) 1397
BspFNI CGCG 1 cut(s) 23
BspLI GGNNCC 2 cut(s) 854, 855
BspMAI CTGCAG 2 cut(s) 45, 426
BspPI GGATC 4 cut(s) 197, 847, 1119, 1452
BspQI GCTCTTC 1 cut(s) 1311
BspT104I TTCGAA 1 cut(s) 237
BsrDI GCAATG 3 cut(s) 237, 682, 1307
BsrI ACTGG 3 cut(s) 1010, 1113, 1127
BssECI CCNNGG 2 cut(s) 796, 891
BssMI GATC 6 cut(s) 84, 202, 839, 1111, 1420, 1444
BssSI CACGAG 1 cut(s) 558
BssT1I CCWWGG 2 cut(s) 796, 891
Bst2BI CACGAG 1 cut(s) 558
Bst2UI CCWGG 1 cut(s) 777
Bst4CI ACNGT 4 cut(s) 36, 286, 754, 1270
Bst6I CTCTTC 2 cut(s) 1311, 1548
BstAPI GCANNNNNTGC 1 cut(s) 1667
BstBAI YACGTR 1 cut(s) 74
BstBI TTCGAA 1 cut(s) 237
BstC8I GCNNGC 4 cut(s) 437, 810, 1343, 1501
BstDEI CTNAG 1 cut(s) 129
BstDSI CCRYGG 1 cut(s) 796
BstF5I GGATG 6 cut(s) 139, 517, 692, 1291, 1443, 1693
BstFNI CGCG 1 cut(s) 23
BstHHI GCGC 1 cut(s) 1206
BstKTI GATC 6 cut(s) 87, 205, 842, 1114, 1423, 1447
BstMAI GTCTC 3 cut(s) 12, 890, 1094
BstMBI GATC 6 cut(s) 84, 202, 839, 1111, 1420, 1444
BstMWI GCNNNNNNNGC 5 cut(s) 385, 1073, 1210, 1318, 1667
BstNI CCWGG 1 cut(s) 777
BstSCI CCNGG 1 cut(s) 775
BstSFI CTRYAG 3 cut(s) 41, 422, 1186
BstUI CGCG 1 cut(s) 23
BstV1I GCAGC 3 cut(s) 824, 1194, 1382
BstX2I RGATCY 2 cut(s) 202, 1444
BstYI RGATCY 2 cut(s) 202, 1444
Bsu15I ATCGAT 3 cut(s) 783, 842, 1583
BsuRI GGCC 3 cut(s) 1076, 1164, 1566
BsuTUI ATCGAT 3 cut(s) 783, 842, 1583
BtgI CCRYGG 1 cut(s) 796
BtsCI GGATG 6 cut(s) 139, 517, 692, 1291, 1443, 1693
BtsI GCAGTG 2 cut(s) 50, 631
BtsIMutI CAGTG 3 cut(s) 50, 291, 631
Cac8I GCNNGC 4 cut(s) 437, 810, 1343, 1501
CfoI GCGC 1 cut(s) 1206
Cfr13I GGNCC 5 cut(s) 215, 853, 1000, 1162, 1266
ClaI ATCGAT 3 cut(s) 783, 842, 1583
CseI GACGC 1 cut(s) 29
Csp6I GTAC 4 cut(s) 322, 406, 1013, 1464
CspCI CAANNNNNGTGG 2 cut(s) 328, 363
CviAII CATG 5 cut(s) 797, 997, 1115, 1175, 1276
CviQI GTAC 4 cut(s) 322, 406, 1013, 1464
DdeI CTNAG 1 cut(s) 129
DpnI GATC 6 cut(s) 86, 204, 841, 1113, 1422, 1446
DpnII GATC 6 cut(s) 84, 202, 839, 1111, 1420, 1444
DraI TTTAAA 2 cut(s) 804, 1224
Eam1104I CTCTTC 2 cut(s) 1311, 1548
EarI CTCTTC 2 cut(s) 1311, 1548
Eco130I CCWWGG 2 cut(s) 796, 891
Eco24I GRGCYC 1 cut(s) 559
Eco47I GGWCC 4 cut(s) 215, 853, 1000, 1266
Eco88I CYCGRG 1 cut(s) 849
EcoO109I RGGNCCY 1 cut(s) 853
EcoRI GAATTC 1 cut(s) 304
EcoRII CCWGG 1 cut(s) 775
EcoT14I CCWWGG 2 cut(s) 796, 891
EcoT38I GRGCYC 1 cut(s) 559
ErhI CCWWGG 2 cut(s) 796, 891
Esp3I CGTCTC 1 cut(s) 12
FaeI CATG 5 cut(s) 800, 1000, 1118, 1178, 1279
FalI AAGNNNNNCTT 6 cut(s) 419, 451, 516, 548, 1041, 1073
FaqI GGGAC 1 cut(s) 839
FatI CATG 5 cut(s) 796, 996, 1114, 1174, 1275
Fnu4HI GCNGC 4 cut(s) 126, 813, 1183, 1371
FokI GGATG 5 cut(s) 146, 524, 699, 1298, 1450
FriOI GRGCYC 1 cut(s) 559
Fsp4HI GCNGC 4 cut(s) 126, 813, 1183, 1371
FspBI CTAG 1 cut(s) 1098
GlaI GCGC 1 cut(s) 1205
GluI GCNGC 4 cut(s) 126, 813, 1183, 1371
GsuI CTGGAG 1 cut(s) 1353
HaeIII GGCC 3 cut(s) 1076, 1164, 1566
HapII CCGG 1 cut(s) 1398
HgaI GACGC 1 cut(s) 29
HhaI GCGC 1 cut(s) 1206
Hin1II CATG 5 cut(s) 800, 1000, 1118, 1178, 1279
Hin6I GCGC 1 cut(s) 1204
HinP1I GCGC 1 cut(s) 1204
HincII GTYRAC 2 cut(s) 697, 718
HindII GTYRAC 2 cut(s) 697, 718
HindIII AAGCTT 2 cut(s) 433, 1246
HinfI GANTC 6 cut(s) 98, 500, 653, 1043, 1355, 1394
HpaI GTTAAC 1 cut(s) 718
HpaII CCGG 1 cut(s) 1398
HphI GGTGA 2 cut(s) 509, 1403
Hpy166II GTNNAC 5 cut(s) 11, 366, 697, 718, 1106
Hpy188I TCNGA 9 cut(s) 97, 103, 142, 505, 649, 739, 1042, 1354, 1360
Hpy8I GTNNAC 5 cut(s) 11, 366, 697, 718, 1106
HpyAV CCTTC 8 cut(s) 236, 457, 587, 1031, 1066, 1273, 1577, 1685
HpyCH4III ACNGT 4 cut(s) 36, 286, 754, 1270
HpyCH4IV ACGT 1 cut(s) 73
HpyF10VI GCNNNNNNNGC 5 cut(s) 385, 1073, 1210, 1318, 1667
HpyF3I CTNAG 1 cut(s) 129
HpySE526I ACGT 1 cut(s) 73
Hsp92II CATG 5 cut(s) 800, 1000, 1118, 1178, 1279
HspAI GCGC 1 cut(s) 1204
KflI GGGWCCC 1 cut(s) 853
Kpn2I TCCGGA 1 cut(s) 1397
KspAI GTTAAC 1 cut(s) 718
Kzo9I GATC 6 cut(s) 84, 202, 839, 1111, 1420, 1444
LguI GCTCTTC 1 cut(s) 1311
LmnI GCTCC 3 cut(s) 67, 385, 1400
Lsp1109I GCAGC 3 cut(s) 824, 1194, 1382
LweI GCATC 3 cut(s) 789, 1143, 1200
MaeI CTAG 1 cut(s) 1098
MaeII ACGT 1 cut(s) 73
MaeIII GTNAC 5 cut(s) 48, 724, 926, 1324, 1391
MalI GATC 6 cut(s) 86, 204, 841, 1113, 1422, 1446
MboI GATC 6 cut(s) 84, 202, 839, 1111, 1420, 1444
MflI RGATCY 2 cut(s) 202, 1444
MhlI GDGCHC 1 cut(s) 559
MluCI AATT 8 cut(s) 304, 458, 541, 619, 909, 944, 1483, 1676
MlyI GAGTC 2 cut(s) 1037, 1388
MmeI TCCRAC 1 cut(s) 1172
MroI TCCGGA 1 cut(s) 1397
MroXI GAANNNNTTC 2 cut(s) 36, 948
MseI TTAA 8 cut(s) 57, 485, 669, 717, 803, 1223, 1491, 1547
MslI CAYNNNNRTG 1 cut(s) 957
MspI CCGG 1 cut(s) 1398
MspR9I CCNGG 1 cut(s) 777
MvaI CCWGG 1 cut(s) 777
MvnI CGCG 1 cut(s) 23
MwoI GCNNNNNNNGC 5 cut(s) 385, 1073, 1210, 1318, 1667
NcoI CCATGG 1 cut(s) 796
NdeII GATC 6 cut(s) 84, 202, 839, 1111, 1420, 1444
NlaIII CATG 5 cut(s) 800, 1000, 1118, 1178, 1279
NlaIV GGNNCC 2 cut(s) 854, 855
NmeAIII GCCGAG 1 cut(s) 1102
NmuCI GTSAC 2 cut(s) 724, 1391
NspV TTCGAA 1 cut(s) 237
PciSI GCTCTTC 1 cut(s) 1311
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PdmI GAANNNNTTC 2 cut(s) 36, 948
PfeI GAWTC 4 cut(s) 98, 500, 653, 1355
PkrI GCNGC 4 cut(s) 127, 814, 1184, 1372
PleI GAGTC 2 cut(s) 1037, 1388
PpsI GAGTC 2 cut(s) 1037, 1388
Ppu21I YACGTR 1 cut(s) 74
PpuMI RGGWCCY 1 cut(s) 853
Psp5II RGGWCCY 1 cut(s) 853
Psp6I CCWGG 1 cut(s) 775
PspGI CCWGG 1 cut(s) 775
PspN4I GGNNCC 2 cut(s) 854, 855
PspPI GGNCC 5 cut(s) 215, 853, 1000, 1162, 1266
PspPPI RGGWCCY 1 cut(s) 853
PstI CTGCAG 2 cut(s) 45, 426
PsuI RGATCY 2 cut(s) 202, 1444
RsaI GTAC 4 cut(s) 323, 407, 1014, 1465
RsaNI GTAC 4 cut(s) 322, 406, 1013, 1464
RseI CAYNNNNRTG 1 cut(s) 957
SapI GCTCTTC 1 cut(s) 1311
SaqAI TTAA 8 cut(s) 57, 485, 669, 717, 803, 1223, 1491, 1547
SatI GCNGC 4 cut(s) 126, 813, 1183, 1371
Sau3AI GATC 6 cut(s) 84, 202, 839, 1111, 1420, 1444
Sau96I GGNCC 5 cut(s) 215, 853, 1000, 1162, 1266
SchI GAGTC 2 cut(s) 1037, 1388
ScrFI CCNGG 1 cut(s) 777
SduI GDGCHC 1 cut(s) 559
SfaNI GCATC 3 cut(s) 789, 1143, 1200
SfcI CTRYAG 3 cut(s) 41, 422, 1186
SfuI TTCGAA 1 cut(s) 237
SinI GGWCC 4 cut(s) 215, 853, 1000, 1266
SmiMI CAYNNNNRTG 1 cut(s) 957
SmlI CTYRAG 1 cut(s) 1652
SmoI CTYRAG 1 cut(s) 1652
Sse9I AATT 8 cut(s) 304, 458, 541, 619, 909, 944, 1483, 1676
SsiI CCGC 4 cut(s) 125, 298, 356, 439
SspMI CTAG 1 cut(s) 1098
StyD4I CCNGG 1 cut(s) 775
StyI CCWWGG 2 cut(s) 796, 891
TaaI ACNGT 4 cut(s) 36, 286, 754, 1270
TaiI ACGT 1 cut(s) 76
TaqI TCGA 9 cut(s) 30, 237, 783, 842, 1046, 1366, 1583, 1604, 1642
TasI AATT 8 cut(s) 304, 458, 541, 619, 909, 944, 1483, 1676
TatI WGTACW 1 cut(s) 1012
TauI GCSGC 1 cut(s) 128
TfiI GAWTC 4 cut(s) 98, 500, 653, 1355
Tru1I TTAA 8 cut(s) 57, 485, 669, 717, 803, 1223, 1491, 1547
Tru9I TTAA 8 cut(s) 57, 485, 669, 717, 803, 1223, 1491, 1547
TscAI CASTG 3 cut(s) 50, 291, 631
TseFI GTSAC 2 cut(s) 724, 1391
TseI GCWGC 3 cut(s) 812, 1182, 1370
Tsp45I GTSAC 2 cut(s) 724, 1391
TspDTI ATGAA 7 cut(s) 918, 941, 1023, 1161, 1292, 1293, 1551
TspGWI ACGGA 1 cut(s) 735
TspRI CASTG 3 cut(s) 50, 291, 631
VpaK11BI GGWCC 4 cut(s) 215, 853, 1000, 1266
XapI RAATTY 3 cut(s) 304, 541, 909
XcmI CCANNNNNNNNNTGG 1 cut(s) 816
XmnI GAANNNNTTC 2 cut(s) 36, 948
XspI CTAG 1 cut(s) 1098
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.