Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004439

Physical Location & Seq

Genomic Coordinates Forward (+)

32161911 .. 32167258

Gene Structure 5348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0223700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

ATGGGCCCTGAATTGGAGCTGAAACCAAGGTCAGAAGCTGCAATGGAAGTTTCAGCTGTAAAAGAGACTGGTGTAATTCATATAGAACCAGAAGAGAAGATTATGCCTTGTGTGAGTAACTACAAAGATAATATTTTTAACATGGAAGCATCATTTGCGGAACAAGCTACTACATCAAATAGAAGTGAGAATCAGGAGATAAATATTACCGATTGTGCAAGTCCGAGTGACGTTCGGATGGTTGAAAATGAATGCCAGGACTTGACAGAGAGCTCGAGTTCTTTCGGTAATACAGTATCTGGGACAGAGAATGGTTTGATGTTGGATGGTGGTGATGAAGTTGAATCACGGTATTGTGAAAATCCATCGGTGTCATTATATGATGGATATTCTGATGCATTTCATACAAGGAAGAAAAAGTTGACTGGTCATTGGAGGAAATTTATACGTCCTCTTATGTGGCGCTGTAAATGGCTCGAACTGCAGATTAAGGAACTTCAGTCCCAGACCCTGAAATATGATGCGGAACTTGCAGAATATGATAAAGTAAAGCAGTTTGAATTTGGAGGGTACACAGCTGAAGGTTTTGATGGAAAGTCAATACCATTTTCAAGTCAAATTCAAAGAAACAAATTCATGAAAAGGAAGAAAAGAAAGAGAATTGAAGATACTACTGATATAGTGTCATTTACGTCAAACCATAAACTGTTTTCCTATTATGAAAATAAAAATTCTGGTGCTAATGGTGGTTCCATGGAAGAGGATTGTGGTAATTTAGCAGCAGGTAAAAGTAGTCATGGCATAAATGAGTTCGACATTGAGTTCAGAGATGGTGATAGTACCTTGGAAGATACTCTTCGGAAGATTGAAGTGGTACATTCACAAGTCTGCCGGTTAAAGACCCGAATTGACAAGGTGGTTAAGGAAAATCCCGCATTGTTTGGCTTTGCTCAAAGTCCTGCTCTTGAAAATGGGAATGATTCACTAGCTGAAACTCTACCAAATGCATTTCAGCATAGTTCTGAGTGTAACATGAGACCTTTACTTTTGCCTGGGAGTGCAGTTTCAAGTCATGAAGGGTTAACCCCTCTCCCTGGTATGATTGGGAACACAGATCAGCCTTGGATTGGCACTGAACAGGAAAATGCCGAGGATGGATACCTTGTACCTAATGCAGCTGTCAAGAAAGAGCAACATGATTTTGAAAACAATAAAGATCAGGTCATACAGCAGCCTCTCCTATCGAGTGCACAGCAGAAAACTAATTTCTCAGTTCCAGCTTCAAAAACTGTGCCAAAAAAATCCAGCTTACCTAATGCAACTCAACAACCCGATTCCACTACGAGGACTGAATTCCCTTGGAATACAAGAAATCGTGGGAAGCGTAAACCTGGTTCGTATAGGTGGAGCCGGAAATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EXS

Protein Analysis

473

Amino Acids

53.15

Weight (kDa)

5.59

Isoelectric Point (pI)

51.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01920 AT1G01920 AT1G01920 AT1G01920 AT1G01920
fragaria_vesca	FvH4_7g12930 FvH4_7g12930 FvH4_7g12930 FvH4_7g12930 FvH4_7g12930 FvH4_7g12930 FvH4_7g12930
malus_domestica	MD02G1195100.v1.1
prunus_persica	Prupe.2G153600_v2.0.a1 Prupe.2G153600_v2.0.a1 Prupe.2G153600_v2.0.a1
pyrus_communis	pycom02g15890 pycom07g11920
rosa_chinensis	RchiOBHm_Chr1g0352061
rosa_laevigata	RLG00000028363
rosa_roxburghii	Rroxscaffold_1G00063100 Rroxscaffold_4G00303300 Rroxscaffold_4G00303330 Rroxscaffold_4G00326370 Rroxscaffold_5G00366830
rosa_rugosa	Rorug01G0223700 Rorug01G0223700
rosa_samantha	Rh1AG238300 Rh1BG208700 Rh1CG222700 Rh1DG235100
rosa_wichuraiana	Rw1G020700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	773
AciI	CCGC	3 cut(s)	158, 524, 933
AcsI	RAATTY	6 cut(s)	440, 560, 618, 632, 730, 1352
AcuI	CTGAAG	2 cut(s)	482, 600
AfaI	GTAC	4 cut(s)	572, 841, 876, 1167
AfiI	CCNNNNNNNGG	4 cut(s)	13, 1094, 1127, 1344
AjnI	CCWGG	4 cut(s)	255, 1051, 1093, 1390
Alw21I	GWGCWC	2 cut(s)	275, 1252
Alw26I	GTCTC	2 cut(s)	59, 1030
Alw44I	GTGCAC	1 cut(s)	1248
AlwNI	CAGNNNCTG	3 cut(s)	38, 299, 511
Ama87I	CYCGRG	1 cut(s)	274
AoxI	GGCC	1 cut(s)	4
ApaI	GGGCCC	1 cut(s)	8
ApaLI	GTGCAC	1 cut(s)	1248
ApeKI	GCWGC	4 cut(s)	38, 779, 1175, 1231
ApoI	RAATTY	6 cut(s)	440, 560, 618, 632, 730, 1352
AspLEI	GCGC	1 cut(s)	465
AspS9I	GGNCC	2 cut(s)	4, 5
AsuHPI	GGTGA	2 cut(s)	344, 845
AvaI	CYCGRG	1 cut(s)	274
BaeGI	GKGCMC	2 cut(s)	8, 1252
BanII	GRGCYC	2 cut(s)	8, 275
Bbv12I	GWGCWC	2 cut(s)	275, 1252
BbvI	GCAGC	4 cut(s)	25, 791, 1187, 1243
BccI	CCATC	7 cut(s)	232, 320, 373, 377, 584, 824, 1148
BciT130I	CCWGG	4 cut(s)	257, 1053, 1095, 1392
BciVI	GTATCC	1 cut(s)	1151
BcoDI	GTCTC	2 cut(s)	59, 1030
BfaI	CTAG	2 cut(s)	986, 1420
BfmI	CTRYAG	1 cut(s)	482
BfoI	RGCGCY	1 cut(s)	466
BfuAI	ACCTGC	1 cut(s)	773
BfuI	GTATCC	1 cut(s)	1151
BisI	GCNGC	4 cut(s)	39, 780, 1176, 1232
BlsI	GCNGC	4 cut(s)	40, 781, 1177, 1233
Bme1390I	CCNGG	4 cut(s)	257, 1053, 1095, 1392
BmeT110I	CYCGRG	1 cut(s)	274
BmgT120I	GGNCC	2 cut(s)	4, 5
BmiI	GGNNCC	3 cut(s)	6, 751, 1409
BmrFI	CCNGG	4 cut(s)	257, 1053, 1095, 1392
BmsI	GCATC	3 cut(s)	158, 385, 511
BsaI	GGTCTC	1 cut(s)	1030
BsaJI	CCNNGG	8 cut(s)	26, 753, 843, 1052, 1093, 1121, 1149, 1358
Bsc4I	CCNNNNNNNGG	4 cut(s)	13, 1094, 1127, 1344
Bse118I	RCCGGY	1 cut(s)	891
Bse1I	ACTGG	2 cut(s)	73, 430
Bse3DI	GCAATG	1 cut(s)	48
BseBI	CCWGG	4 cut(s)	257, 1053, 1095, 1392
BseDI	CCNNGG	8 cut(s)	26, 753, 843, 1052, 1093, 1121, 1149, 1358
BseGI	GGATG	3 cut(s)	243, 331, 1159
BseLI	CCNNNNNNNGG	4 cut(s)	13, 1094, 1127, 1344
BseMI	GCAATG	1 cut(s)	48
BseMII	CTCAG	2 cut(s)	1014, 1284
BseNI	ACTGG	2 cut(s)	73, 430
BseSI	GKGCMC	2 cut(s)	8, 1252
BseXI	GCAGC	4 cut(s)	25, 791, 1187, 1243
BsgI	GTGCAG	1 cut(s)	1080
BshFI	GGCC	1 cut(s)	6
BsiHKAI	GWGCWC	2 cut(s)	275, 1252
BsiHKCI	CYCGRG	1 cut(s)	274
BsiSI	CCGG	2 cut(s)	892, 1411
BslFI	GGGAC	2 cut(s)	316, 487
BslI	CCNNNNNNNGG	4 cut(s)	13, 1094, 1127, 1344
BsmAI	GTCTC	2 cut(s)	59, 1030
BsmFI	GGGAC	2 cut(s)	316, 487
BsmI	GAATGC	1 cut(s)	257
BsnI	GGCC	1 cut(s)	6
Bso31I	GGTCTC	1 cut(s)	1030
BsoBI	CYCGRG	1 cut(s)	274
Bsp120I	GGGCCC	1 cut(s)	4
Bsp1286I	GDGCHC	3 cut(s)	8, 275, 1252
Bsp143I	GATC	2 cut(s)	1114, 1216
Bsp19I	CCATGG	1 cut(s)	753
BspACI	CCGC	3 cut(s)	158, 524, 933
BspANI	GGCC	1 cut(s)	6
BspCNI	CTCAG	2 cut(s)	1015, 1283
BspHI	TCATGA	2 cut(s)	636, 1072
BspLI	GGNNCC	3 cut(s)	6, 751, 1409
BspMAI	CTGCAG	1 cut(s)	486
BspMI	ACCTGC	1 cut(s)	773
BspTNI	GGTCTC	1 cut(s)	1030
BsrDI	GCAATG	1 cut(s)	48
BsrFI	RCCGGY	1 cut(s)	891
BsrI	ACTGG	2 cut(s)	73, 430
BssAI	RCCGGY	1 cut(s)	891
BssECI	CCNNGG	8 cut(s)	26, 753, 843, 1052, 1093, 1121, 1149, 1358
BssMI	GATC	2 cut(s)	1114, 1216
BssT1I	CCWWGG	5 cut(s)	26, 753, 843, 1121, 1358
Bst2UI	CCWGG	4 cut(s)	257, 1053, 1095, 1392
Bst4CI	ACNGT	4 cut(s)	295, 351, 708, 1291
Bst6I	CTCTTC	3 cut(s)	87, 753, 861
BstAPI	GCANNNNNTGC	1 cut(s)	155
BstDEI	CTNAG	2 cut(s)	1023, 1270
BstDSI	CCRYGG	1 cut(s)	753
BstF5I	GGATG	3 cut(s)	243, 331, 1159
BstH2I	RGCGCY	1 cut(s)	466
BstHHI	GCGC	1 cut(s)	465
BstKTI	GATC	2 cut(s)	1117, 1219
BstMAI	GTCTC	2 cut(s)	59, 1030
BstMBI	GATC	2 cut(s)	1114, 1216
BstMWI	GCNNNNNNNGC	4 cut(s)	155, 164, 481, 530
BstNI	CCWGG	4 cut(s)	257, 1053, 1095, 1392
BstSCI	CCNGG	4 cut(s)	255, 1051, 1093, 1390
BstSFI	CTRYAG	1 cut(s)	482
BstSLI	GKGCMC	2 cut(s)	8, 1252
BstV1I	GCAGC	4 cut(s)	25, 791, 1187, 1243
BsuI	GTATCC	1 cut(s)	1151
BsuRI	GGCC	1 cut(s)	6
BtgI	CCRYGG	1 cut(s)	753
BtsCI	GGATG	3 cut(s)	243, 331, 1159
BtsIMutI	CAGTG	1 cut(s)	1131
BveI	ACCTGC	1 cut(s)	773
CaiI	CAGNNNCTG	3 cut(s)	38, 299, 511
CciI	TCATGA	2 cut(s)	636, 1072
CfoI	GCGC	1 cut(s)	465
Cfr10I	RCCGGY	1 cut(s)	891
Cfr13I	GGNCC	2 cut(s)	4, 5
CsiI	ACCWGGT	1 cut(s)	1390
Csp6I	GTAC	4 cut(s)	571, 840, 875, 1166
CviAII	CATG	7 cut(s)	142, 637, 754, 797, 1033, 1073, 1196
CviQI	GTAC	4 cut(s)	571, 840, 875, 1166
DdeI	CTNAG	2 cut(s)	1023, 1270
DpnI	GATC	2 cut(s)	1116, 1218
DpnII	GATC	2 cut(s)	1114, 1216
Eam1104I	CTCTTC	3 cut(s)	87, 753, 861
EarI	CTCTTC	3 cut(s)	87, 753, 861
Ecl136II	GAGCTC	1 cut(s)	273
Eco130I	CCWWGG	5 cut(s)	26, 753, 843, 1121, 1358
Eco24I	GRGCYC	2 cut(s)	8, 275
Eco31I	GGTCTC	1 cut(s)	1030
Eco53kI	GAGCTC	1 cut(s)	273
Eco57I	CTGAAG	2 cut(s)	482, 600
Eco88I	CYCGRG	1 cut(s)	274
EcoICRI	GAGCTC	1 cut(s)	273
EcoO109I	RGGNCCY	1 cut(s)	5
EcoRI	GAATTC	1 cut(s)	1352
EcoRII	CCWGG	4 cut(s)	255, 1051, 1093, 1390
EcoT14I	CCWWGG	5 cut(s)	26, 753, 843, 1121, 1358
EcoT22I	ATGCAT	2 cut(s)	400, 1009
EcoT38I	GRGCYC	2 cut(s)	8, 275
ErhI	CCWWGG	5 cut(s)	26, 753, 843, 1121, 1358
FaeI	CATG	7 cut(s)	145, 640, 757, 800, 1036, 1076, 1199
FalI	AAGNNNNNCTT	2 cut(s)	840, 872
FaqI	GGGAC	2 cut(s)	316, 487
FatI	CATG	7 cut(s)	141, 636, 753, 796, 1032, 1072, 1195
FauI	CCCGC	1 cut(s)	940
Fnu4HI	GCNGC	4 cut(s)	39, 780, 1176, 1232
FokI	GGATG	3 cut(s)	250, 338, 1166
FriOI	GRGCYC	2 cut(s)	8, 275
Fsp4HI	GCNGC	4 cut(s)	39, 780, 1176, 1232
FspBI	CTAG	2 cut(s)	986, 1420
GlaI	GCGC	1 cut(s)	464
GluI	GCNGC	4 cut(s)	39, 780, 1176, 1232
HaeII	RGCGCY	1 cut(s)	466
HaeIII	GGCC	1 cut(s)	6
HapII	CCGG	2 cut(s)	892, 1411
HhaI	GCGC	1 cut(s)	465
Hin1II	CATG	7 cut(s)	145, 640, 757, 800, 1036, 1076, 1199
Hin6I	GCGC	1 cut(s)	463
HinP1I	GCGC	1 cut(s)	463
HincII	GTYRAC	2 cut(s)	423, 1083
HindII	GTYRAC	2 cut(s)	423, 1083
HinfI	GANTC	4 cut(s)	190, 344, 980, 1334
HpaI	GTTAAC	1 cut(s)	1083
HpaII	CCGG	2 cut(s)	892, 1411
HphI	GGTGA	2 cut(s)	344, 845
Hpy166II	GTNNAC	5 cut(s)	423, 573, 1083, 1250, 1388
Hpy188I	TCNGA	7 cut(s)	34, 225, 237, 394, 827, 861, 1024
Hpy188III	TCNNGA	5 cut(s)	194, 637, 965, 1073, 1183
Hpy8I	GTNNAC	5 cut(s)	423, 573, 1083, 1250, 1388
HpyAV	CCTTC	2 cut(s)	575, 1070
HpyCH4III	ACNGT	4 cut(s)	295, 351, 708, 1291
HpyCH4IV	ACGT	3 cut(s)	231, 448, 692
HpyF10VI	GCNNNNNNNGC	4 cut(s)	155, 164, 481, 530
HpyF3I	CTNAG	2 cut(s)	1023, 1270
HpySE526I	ACGT	3 cut(s)	231, 448, 692
Hsp92II	CATG	7 cut(s)	145, 640, 757, 800, 1036, 1076, 1199
HspAI	GCGC	1 cut(s)	463
KspAI	GTTAAC	1 cut(s)	1083
Kzo9I	GATC	2 cut(s)	1114, 1216
LmnI	GCTCC	2 cut(s)	16, 1407
Lsp1109I	GCAGC	4 cut(s)	25, 791, 1187, 1243
LweI	GCATC	3 cut(s)	158, 385, 511
MabI	ACCWGGT	1 cut(s)	1390
MaeI	CTAG	2 cut(s)	986, 1420
MaeII	ACGT	3 cut(s)	231, 448, 692
MaeIII	GTNAC	3 cut(s)	116, 227, 1028
MalI	GATC	2 cut(s)	1116, 1218
MboI	GATC	2 cut(s)	1114, 1216
MboII	GAAGA	9 cut(s)	104, 109, 424, 658, 677, 770, 848, 860, 874
MhlI	GDGCHC	3 cut(s)	8, 275, 1252
MmeI	TCCRAC	1 cut(s)	303
MnlI	CCTC	8 cut(s)	429, 462, 560, 754, 1098, 1144, 1245, 1338
Mph1103I	ATGCAT	2 cut(s)	400, 1009
MseI	TTAA	5 cut(s)	138, 489, 896, 921, 1082
MspA1I	CMGCKG	3 cut(s)	56, 578, 1178
MspI	CCGG	2 cut(s)	892, 1411
MspR9I	CCNGG	4 cut(s)	257, 1053, 1095, 1392
Mva1269I	GAATGC	1 cut(s)	257
MvaI	CCWGG	4 cut(s)	257, 1053, 1095, 1392
MwoI	GCNNNNNNNGC	4 cut(s)	155, 164, 481, 530
NcoI	CCATGG	1 cut(s)	753
NdeII	GATC	2 cut(s)	1114, 1216
NlaIII	CATG	7 cut(s)	145, 640, 757, 800, 1036, 1076, 1199
NlaIV	GGNNCC	3 cut(s)	6, 751, 1409
NmeAIII	GCCGAG	1 cut(s)	1174
NmuCI	GTSAC	1 cut(s)	227
NsiI	ATGCAT	2 cut(s)	400, 1009
PaeR7I	CTCGAG	1 cut(s)	274
PagI	TCATGA	2 cut(s)	636, 1072
PcsI	WCGNNNNNNNCGW	1 cut(s)	1381
PctI	GAATGC	1 cut(s)	257
PfeI	GAWTC	4 cut(s)	190, 344, 980, 1334
PkrI	GCNGC	4 cut(s)	40, 781, 1177, 1233
Psp124BI	GAGCTC	1 cut(s)	275
Psp6I	CCWGG	4 cut(s)	255, 1051, 1093, 1390
PspGI	CCWGG	4 cut(s)	255, 1051, 1093, 1390
PspN4I	GGNNCC	3 cut(s)	6, 751, 1409
PspOMI	GGGCCC	1 cut(s)	4
PspPI	GGNCC	2 cut(s)	4, 5
PspXI	VCTCGAGB	1 cut(s)	274
PsrI	GAACNNNNNNTAC	2 cut(s)	1378, 1410
PstI	CTGCAG	1 cut(s)	486
PstNI	CAGNNNCTG	3 cut(s)	38, 299, 511
PvuII	CAGCTG	3 cut(s)	56, 578, 1178
RsaI	GTAC	4 cut(s)	572, 841, 876, 1167
RsaNI	GTAC	4 cut(s)	571, 840, 875, 1166
SacI	GAGCTC	1 cut(s)	275
SaqAI	TTAA	5 cut(s)	138, 489, 896, 921, 1082
SatI	GCNGC	4 cut(s)	39, 780, 1176, 1232
Sau3AI	GATC	2 cut(s)	1114, 1216
Sau96I	GGNCC	2 cut(s)	4, 5
ScrFI	CCNGG	4 cut(s)	257, 1053, 1095, 1392
SduI	GDGCHC	3 cut(s)	8, 275, 1252
SexAI	ACCWGGT	1 cut(s)	1390
SfaNI	GCATC	3 cut(s)	158, 385, 511
SfcI	CTRYAG	1 cut(s)	482
Sfr274I	CTCGAG	1 cut(s)	274
SlaI	CTCGAG	1 cut(s)	274
SmlI	CTYRAG	1 cut(s)	274
SmoI	CTYRAG	1 cut(s)	274
SsiI	CCGC	3 cut(s)	158, 524, 933
SspI	AATATT	2 cut(s)	133, 205
SspMI	CTAG	2 cut(s)	986, 1420
SstI	GAGCTC	1 cut(s)	275
StyD4I	CCNGG	4 cut(s)	255, 1051, 1093, 1390
StyI	CCWWGG	5 cut(s)	26, 753, 843, 1121, 1358
TaaI	ACNGT	4 cut(s)	295, 351, 708, 1291
TaiI	ACGT	3 cut(s)	234, 451, 695
TaqI	TCGA	4 cut(s)	275, 477, 813, 1244
TfiI	GAWTC	4 cut(s)	190, 344, 980, 1334
Tru1I	TTAA	5 cut(s)	138, 489, 896, 921, 1082
Tru9I	TTAA	5 cut(s)	138, 489, 896, 921, 1082
TscAI	CASTG	1 cut(s)	1138
TseFI	GTSAC	1 cut(s)	227
TseI	GCWGC	4 cut(s)	38, 779, 1175, 1231
Tsp45I	GTSAC	1 cut(s)	227
TspDTI	ATGAA	8 cut(s)	68, 264, 351, 392, 625, 653, 735, 1089
TspRI	CASTG	1 cut(s)	1138
VneI	GTGCAC	1 cut(s)	1248
XapI	RAATTY	6 cut(s)	440, 560, 618, 632, 730, 1352
XhoI	CTCGAG	1 cut(s)	274
XspI	CTAG	2 cut(s)	986, 1420
Zsp2I	ATGCAT	2 cut(s)	400, 1009

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.