pycom07g11920

SET domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
13220555 .. 13227392
6838 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g11920.7

Sequence Viewer

Length: 1707 bp
ATGGCGACAAGCTCACGGGAAGAGGCCAAGCTCGAACGATTCCTCCACTGGTTACAGGTTAATGGAGCGGAGCTACGCGGGTGCAAGATCAACTACTCCGATTCCAACAAAGGGTTTGGCATTTTTTCGGCTAATGATGTTTCTGATGGGGTTCTATTAGTTGTTCCTCTGGATCTAGCAATAACTCCGATGAGAGTTTTGCAAGACCCTCTTCTTGGACCAGAATGTAGAGCAATGTTTGAAGAAGGAGATGTAGATGATAGGTTCTTGATGATCTTATATCTCACAGTGGAGCGCCTCCGCAAGAATTCTTCTTGGAAACCGTACCTTGATATGCTTCCGACCACTTTTGGCAATCCACTTTGGTTTACTGATGATGAGCTTTTGGAGCTAAAAGGGACAACATTGTATCGAGCAACGGAACTGCAGAAGAAAAGCTTGGTGTCTTTATATGATAATAAACTGAAGGCTCTGGTGAAGAAACTGTTAACTCTGGACAGGGATTTGGAAAGAGATGTGTGCTTTGAAGATTTCCTCTGGGCAAATTCTCTTTTTTGGACCCGTGCTTTAAACATTCCCCTTCCATATTCTTATGTATTTCCCCAAATTCAAGAAGGCAGTGCTTCAGTTGGCAAAAATATTGAGGTTTCTACTAATATTTGCAAAGAAGAGTTGGTTAATGGCAAAGATGAAAAAGGATGTCATGTTGAAGGGGTTGATATTCCAGTTAGTAAAGCGACATCCACGCCTAAACAAAAAGAGACTGTCTGGGTTGAGGGTCTTGTTCCTGGCATTGACTTTTGCAACCATGATATAAAGGCAGCAGCAACATGGGAAGTTGACGAAACTGGATCGATAACTGGAGTTCCTAATTCTATGTATCTTCTCTCGGCTGGACAACCCTTGCAGGTTGACGCAGAAATTTCCATAAGTTATGGTAGCAAAGGGAACGAGGAACTACTTTATCTGTATGGTTTTGTCCTTGATGGTAATCCAGATGACTATCTCATGGTTCATTATCCAGTAGAAGCCATTCAAAATGTTCCCTTTGCTGACTCGAAAGCACAGCTTCTCGAAGCACAGAAAGCTGAAATGAGGTGTCTGTTACCTAGAAGTTTACTGGATCATGGCTTTTTCCCAGTAGGCAACTCAAATACTGAAGGAAGTGAGAAGTGCAAAATCGACCATGTATGCAGCTATAGTTGGAGTGGTCAGCGAAAGATGCCATCGTACTCACACAGGTTGGTTTTTCCTGAAAGCTTTTTGACAGCCTTGAGGACTATAGCCATGACGGAGGATGAGCTATTTCAGGTTTCATCGCTGCTGGAAGAGCTTGTACAATCAAGAGAGGGGAGGCAACCATCTGATTCAGAAGTTCAAGCAGCAGTATGGGAAGCTTGTGGTGATTCCGGAGCTTTGCAAATACTCGTTGATCTTCTTAACATGAGGATGACGGATCTTCAAGAGTCTTCTGGTACAGAGGACAGCGACACCATTTTGCTTGAAAAGACACGTATTACTGAAAGTGCAAACCAGCAGAACGAGAACAATTTAAGCGGAGAGACGGACGGCGTTGCACGACTCAAGTCGATGACTCGAAACGTGTGGTCTAGTGTAATTTATAGACGTGGGCAGAAGCAACTCACTCGACTGTTCCTCAAGGAAGCGGAACACGCCCTGCAATTAGCCCTCAGCGAAGGGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

569

Amino Acids

63.72

Weight (kDa)

4.79

Isoelectric Point (pI)

39.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 898
AccBSI CCGCTC 1 cut(s) 68
AccII CGCG 1 cut(s) 78
AccIII TCCGGA 1 cut(s) 1409
AciI CCGC 5 cut(s) 68, 78, 301, 1557, 1667
AclWI GGATC 4 cut(s) 180, 859, 1131, 1464
AcsI RAATTY 4 cut(s) 307, 544, 606, 921
AcuI CTGAAG 3 cut(s) 485, 609, 1179
AfaI GTAC 4 cut(s) 326, 1232, 1338, 1477
AfiI CCNNNNNNNGG 2 cut(s) 111, 215
AflIII ACRYGT 2 cut(s) 1511, 1602
AgsI TTSAA 8 cut(s) 242, 527, 611, 710, 1037, 1379, 1463, 1505
AjiI CACGTC 1 cut(s) 1628
AjnI CCWGG 1 cut(s) 787
AjuI GAANNNNNNNTTGG 2 cut(s) 422, 454
AloI GAACNNNNNNTCC 2 cut(s) 27, 59
Alw26I GTCTC 2 cut(s) 755, 1556
AlwI GGATC 4 cut(s) 180, 859, 1131, 1464
Aor13HI TCCGGA 1 cut(s) 1409
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 5 cut(s) 821, 824, 1194, 1321, 1382
ApoI RAATTY 4 cut(s) 307, 544, 606, 921
Asp700I GAANNNNTTC 1 cut(s) 1032
AspLEI GCGC 1 cut(s) 297
AspS9I GGNCC 2 cut(s) 218, 558
AsuHPI GGTGA 2 cut(s) 487, 1415
AvaII GGWCC 2 cut(s) 218, 558
BarI GAAGNNNNNNTAC 2 cut(s) 1320, 1352
BbsI GAAGAC 1 cut(s) 1461
BbvCI CCTCAGC 1 cut(s) 1691
BbvI GCAGC 5 cut(s) 833, 836, 1206, 1308, 1394
BccI CCATC 4 cut(s) 140, 980, 1234, 1369
BceAI ACGGC 1 cut(s) 1585
BcgI CGANNNNNNTGC 2 cut(s) 1628, 1662
BciT130I CCWGG 1 cut(s) 789
BcoDI GTCTC 2 cut(s) 755, 1556
BfaI CTAG 3 cut(s) 176, 1110, 1611
BfmI CTRYAG 3 cut(s) 425, 1198, 1281
BfoI RGCGCY 1 cut(s) 298
BfuAI ACCTGC 1 cut(s) 898
BisI GCNGC 5 cut(s) 822, 825, 1195, 1322, 1383
BlsI GCNGC 5 cut(s) 823, 826, 1196, 1323, 1384
Bme1390I CCNGG 1 cut(s) 789
Bme18I GGWCC 2 cut(s) 218, 558
BmgBI CACGTC 1 cut(s) 1628
BmgT120I GGNCC 2 cut(s) 218, 558
BmiI GGNNCC 1 cut(s) 560
BmrFI CCNGG 1 cut(s) 789
BmrI ACTGGG 1 cut(s) 1133
BmsI GCATC 1 cut(s) 1212
BmuI ACTGGG 1 cut(s) 1133
BoxI GACNNNNGTC 1 cut(s) 1585
BpiI GAAGAC 1 cut(s) 1461
BpmI CTGGAG 1 cut(s) 882
Bpu10I CCTNAGC 1 cut(s) 1691
BpuEI CTTGAG 3 cut(s) 1294, 1568, 1643
Bsa29I ATCGAT 1 cut(s) 854
BsaAI YACGTR 1 cut(s) 1514
BsaBI GATNNNNATC 2 cut(s) 990, 1002
BsaWI WCCGGW 1 cut(s) 1409
BsaXI ACNNNNNCTCC 2 cut(s) 27, 57
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 215
Bse1I ACTGG 7 cut(s) 53, 725, 853, 865, 1022, 1125, 1139
Bse3DI GCAATG 1 cut(s) 240
Bse8I GATNNNNATC 2 cut(s) 990, 1002
BseAI TCCGGA 1 cut(s) 1409
BseBI CCWGG 1 cut(s) 789
BseCI ATCGAT 1 cut(s) 854
BseGI GGATG 4 cut(s) 704, 740, 1303, 1455
BseJI GATNNNNATC 2 cut(s) 990, 1002
BseLI CCNNNNNNNGG 2 cut(s) 111, 215
BseMI GCAATG 1 cut(s) 240
BseMII CTCAG 1 cut(s) 1705
BseNI ACTGG 7 cut(s) 53, 725, 853, 865, 1022, 1125, 1139
BseXI GCAGC 5 cut(s) 833, 836, 1206, 1308, 1394
Bsh1236I CGCG 1 cut(s) 78
BshFI GGCC 1 cut(s) 26
BshVI ATCGAT 1 cut(s) 854
BsiSI CCGG 1 cut(s) 1410
BslFI GGGAC 1 cut(s) 412
BslI CCNNNNNNNGG 2 cut(s) 111, 215
BsmAI GTCTC 2 cut(s) 755, 1556
BsmBI CGTCTC 1 cut(s) 1556
BsmFI GGGAC 1 cut(s) 412
BsnI GGCC 1 cut(s) 26
Bsp13I TCCGGA 1 cut(s) 1409
Bsp1407I TGTACA 1 cut(s) 1336
Bsp143I GATC 7 cut(s) 87, 172, 273, 851, 1123, 1432, 1456
BspACI CCGC 5 cut(s) 68, 78, 301, 1557, 1667
BspANI GGCC 1 cut(s) 26
BspCNI CTCAG 1 cut(s) 1704
BspDI ATCGAT 1 cut(s) 854
BspEI TCCGGA 1 cut(s) 1409
BspFNI CGCG 1 cut(s) 78
BspLI GGNNCC 1 cut(s) 560
BspMAI CTGCAG 1 cut(s) 429
BspMI ACCTGC 1 cut(s) 898
BspPI GGATC 4 cut(s) 180, 859, 1131, 1464
BspQI GCTCTTC 1 cut(s) 1323
BsrBI CCGCTC 1 cut(s) 68
BsrDI GCAATG 1 cut(s) 240
BsrGI TGTACA 1 cut(s) 1336
BsrI ACTGG 7 cut(s) 53, 725, 853, 865, 1022, 1125, 1139
BssMI GATC 7 cut(s) 87, 172, 273, 851, 1123, 1432, 1456
Bst2UI CCWGG 1 cut(s) 789
Bst4CI ACNGT 5 cut(s) 289, 324, 486, 766, 1653
Bst6I CTCTTC 4 cut(s) 15, 216, 663, 1323
BstAUI TGTACA 1 cut(s) 1336
BstBAI YACGTR 1 cut(s) 1514
BstDEI CTNAG 1 cut(s) 1691
BstF5I GGATG 4 cut(s) 704, 740, 1303, 1455
BstFNI CGCG 1 cut(s) 78
BstH2I RGCGCY 1 cut(s) 298
BstHHI GCGC 1 cut(s) 297
BstKTI GATC 7 cut(s) 90, 175, 276, 854, 1126, 1435, 1459
BstMAI GTCTC 2 cut(s) 755, 1556
BstMBI GATC 7 cut(s) 87, 172, 273, 851, 1123, 1432, 1456
BstMWI GCNNNNNNNGC 5 cut(s) 388, 1085, 1222, 1330, 1673
BstNI CCWGG 1 cut(s) 789
BstPAI GACNNNNGTC 1 cut(s) 1585
BstSCI CCNGG 1 cut(s) 787
BstSFI CTRYAG 3 cut(s) 425, 1198, 1281
BstUI CGCG 1 cut(s) 78
BstV1I GCAGC 5 cut(s) 833, 836, 1206, 1308, 1394
BstV2I GAAGAC 1 cut(s) 1461
BstX2I RGATCY 2 cut(s) 172, 1456
BstYI RGATCY 2 cut(s) 172, 1456
Bsu15I ATCGAT 1 cut(s) 854
BsuRI GGCC 1 cut(s) 26
BsuTUI ATCGAT 1 cut(s) 854
BtgZI GCGATG 1 cut(s) 1302
BtrI CACGTC 1 cut(s) 1628
BtsCI GGATG 4 cut(s) 704, 740, 1303, 1455
BtsI GCAGTG 1 cut(s) 625
BtsIMutI CAGTG 3 cut(s) 46, 294, 625
BveI ACCTGC 1 cut(s) 898
CfoI GCGC 1 cut(s) 297
Cfr13I GGNCC 2 cut(s) 218, 558
ClaI ATCGAT 1 cut(s) 854
CseI GACGC 1 cut(s) 923
Csp6I GTAC 4 cut(s) 325, 1231, 1337, 1476
CviAII CATG 8 cut(s) 704, 809, 831, 1009, 1127, 1187, 1288, 1444
CviQI GTAC 4 cut(s) 325, 1231, 1337, 1476
DdeI CTNAG 1 cut(s) 1691
DpnI GATC 7 cut(s) 89, 174, 275, 853, 1125, 1434, 1458
DpnII GATC 7 cut(s) 87, 172, 273, 851, 1123, 1432, 1456
DraI TTTAAA 1 cut(s) 570
Eam1104I CTCTTC 4 cut(s) 15, 216, 663, 1323
EarI CTCTTC 4 cut(s) 15, 216, 663, 1323
Eco47I GGWCC 2 cut(s) 218, 558
Eco57I CTGAAG 3 cut(s) 485, 609, 1179
EcoRI GAATTC 1 cut(s) 307
EcoRII CCWGG 1 cut(s) 787
Esp3I CGTCTC 1 cut(s) 1556
FaeI CATG 8 cut(s) 707, 812, 834, 1012, 1130, 1190, 1291, 1447
FalI AAGNNNNNCTT 6 cut(s) 195, 227, 422, 454, 1053, 1085
FaqI GGGAC 1 cut(s) 412
FatI CATG 8 cut(s) 703, 808, 830, 1008, 1126, 1186, 1287, 1443
FauI CCCGC 1 cut(s) 71
Fnu4HI GCNGC 5 cut(s) 822, 825, 1195, 1322, 1383
FokI GGATG 4 cut(s) 711, 727, 1310, 1462
Fsp4HI GCNGC 5 cut(s) 822, 825, 1195, 1322, 1383
FspBI CTAG 3 cut(s) 176, 1110, 1611
GlaI GCGC 1 cut(s) 296
GluI GCNGC 5 cut(s) 822, 825, 1195, 1322, 1383
GsuI CTGGAG 1 cut(s) 882
HaeII RGCGCY 1 cut(s) 298
HaeIII GGCC 1 cut(s) 26
HapII CCGG 1 cut(s) 1410
HgaI GACGC 1 cut(s) 923
HhaI GCGC 1 cut(s) 297
Hin1II CATG 8 cut(s) 707, 812, 834, 1012, 1130, 1190, 1291, 1447
Hin6I GCGC 1 cut(s) 295
HinP1I GCGC 1 cut(s) 295
HincII GTYRAC 3 cut(s) 489, 841, 913
HindII GTYRAC 3 cut(s) 489, 841, 913
HindIII AAGCTT 3 cut(s) 436, 1258, 1395
HinfI GANTC 8 cut(s) 39, 101, 1055, 1367, 1406, 1466, 1581, 1594
HpaI GTTAAC 1 cut(s) 489
HpaII CCGG 1 cut(s) 1410
HphI GGTGA 2 cut(s) 487, 1415
Hpy166II GTNNAC 5 cut(s) 369, 489, 841, 913, 1118
Hpy188I TCNGA 6 cut(s) 100, 145, 189, 342, 1366, 1372
Hpy8I GTNNAC 5 cut(s) 369, 489, 841, 913, 1118
HpyAV CCTTC 7 cut(s) 239, 460, 590, 608, 704, 1154, 1691
HpyCH4III ACNGT 5 cut(s) 289, 324, 486, 766, 1653
HpyCH4IV ACGT 3 cut(s) 1513, 1602, 1627
HpyF10VI GCNNNNNNNGC 5 cut(s) 388, 1085, 1222, 1330, 1673
HpyF3I CTNAG 1 cut(s) 1691
HpySE526I ACGT 3 cut(s) 1513, 1602, 1627
Hsp92II CATG 8 cut(s) 707, 812, 834, 1012, 1130, 1190, 1291, 1447
HspAI GCGC 1 cut(s) 295
Kpn2I TCCGGA 1 cut(s) 1409
KspAI GTTAAC 1 cut(s) 489
Kzo9I GATC 7 cut(s) 87, 172, 273, 851, 1123, 1432, 1456
LguI GCTCTTC 1 cut(s) 1323
LmnI GCTCC 5 cut(s) 65, 70, 292, 388, 1412
Lsp1109I GCAGC 5 cut(s) 833, 836, 1206, 1308, 1394
LweI GCATC 1 cut(s) 1212
MaeI CTAG 3 cut(s) 176, 1110, 1611
MaeII ACGT 3 cut(s) 1513, 1602, 1627
MaeIII GTNAC 2 cut(s) 51, 1104
MalI GATC 7 cut(s) 89, 174, 275, 853, 1125, 1434, 1458
MbiI CCGCTC 1 cut(s) 68
MboI GATC 7 cut(s) 87, 172, 273, 851, 1123, 1432, 1456
MflI RGATCY 2 cut(s) 172, 1456
MluCI AATT 8 cut(s) 307, 544, 606, 871, 921, 1549, 1617, 1682
MlyI GAGTC 4 cut(s) 1049, 1475, 1575, 1588
MmeI TCCRAC 3 cut(s) 129, 365, 1184
MroI TCCGGA 1 cut(s) 1409
MroXI GAANNNNTTC 1 cut(s) 1032
MseI TTAA 6 cut(s) 60, 488, 569, 678, 1440, 1553
MslI CAYNNNNRTG 1 cut(s) 1448
MspI CCGG 1 cut(s) 1410
MspR9I CCNGG 1 cut(s) 789
MvaI CCWGG 1 cut(s) 789
MvnI CGCG 1 cut(s) 78
MwoI GCNNNNNNNGC 5 cut(s) 388, 1085, 1222, 1330, 1673
NdeII GATC 7 cut(s) 87, 172, 273, 851, 1123, 1432, 1456
NlaIII CATG 8 cut(s) 707, 812, 834, 1012, 1130, 1190, 1291, 1447
NlaIV GGNNCC 1 cut(s) 560
NmeAIII GCCGAG 1 cut(s) 869
PciSI GCTCTTC 1 cut(s) 1323
PdmI GAANNNNTTC 1 cut(s) 1032
PfeI GAWTC 4 cut(s) 39, 101, 1367, 1406
PkrI GCNGC 5 cut(s) 823, 826, 1196, 1323, 1384
PleI GAGTC 4 cut(s) 1049, 1474, 1575, 1588
PpsI GAGTC 4 cut(s) 1049, 1474, 1575, 1588
Ppu21I YACGTR 1 cut(s) 1514
PshAI GACNNNNGTC 1 cut(s) 1585
Psp6I CCWGG 1 cut(s) 787
PspGI CCWGG 1 cut(s) 787
PspN4I GGNNCC 1 cut(s) 560
PspPI GGNCC 2 cut(s) 218, 558
PstI CTGCAG 1 cut(s) 429
PsuI RGATCY 2 cut(s) 172, 1456
RsaI GTAC 4 cut(s) 326, 1232, 1338, 1477
RsaNI GTAC 4 cut(s) 325, 1231, 1337, 1476
RseI CAYNNNNRTG 1 cut(s) 1448
SapI GCTCTTC 1 cut(s) 1323
SaqAI TTAA 6 cut(s) 60, 488, 569, 678, 1440, 1553
SatI GCNGC 5 cut(s) 822, 825, 1195, 1322, 1383
Sau3AI GATC 7 cut(s) 87, 172, 273, 851, 1123, 1432, 1456
Sau96I GGNCC 2 cut(s) 218, 558
SchI GAGTC 4 cut(s) 1049, 1475, 1575, 1588
ScrFI CCNGG 1 cut(s) 789
SfaNI GCATC 1 cut(s) 1212
SfcI CTRYAG 3 cut(s) 425, 1198, 1281
SinI GGWCC 2 cut(s) 218, 558
SmiMI CAYNNNNRTG 1 cut(s) 1448
SmlI CTYRAG 3 cut(s) 1273, 1583, 1658
SmoI CTYRAG 3 cut(s) 1273, 1583, 1658
Sse9I AATT 8 cut(s) 307, 544, 606, 871, 921, 1549, 1617, 1682
SsiI CCGC 5 cut(s) 68, 78, 301, 1557, 1667
SspI AATATT 2 cut(s) 640, 658
SspMI CTAG 3 cut(s) 176, 1110, 1611
StyD4I CCNGG 1 cut(s) 787
TaaI ACNGT 5 cut(s) 289, 324, 486, 766, 1653
TaiI ACGT 3 cut(s) 1516, 1605, 1630
TaqI TCGA 9 cut(s) 33, 412, 854, 1058, 1074, 1182, 1589, 1597, 1648
TasI AATT 8 cut(s) 307, 544, 606, 871, 921, 1549, 1617, 1682
TatI WGTACW 1 cut(s) 1336
TfiI GAWTC 4 cut(s) 39, 101, 1367, 1406
Tru1I TTAA 6 cut(s) 60, 488, 569, 678, 1440, 1553
Tru9I TTAA 6 cut(s) 60, 488, 569, 678, 1440, 1553
TscAI CASTG 3 cut(s) 53, 294, 625
TseI GCWGC 5 cut(s) 821, 824, 1194, 1321, 1382
TspDTI ATGAA 3 cut(s) 705, 1004, 1305
TspGWI ACGGA 4 cut(s) 434, 1307, 1469, 1580
TspRI CASTG 3 cut(s) 53, 294, 625
VpaK11BI GGWCC 2 cut(s) 218, 558
XapI RAATTY 4 cut(s) 307, 544, 606, 921
XmnI GAANNNNTTC 1 cut(s) 1032
XspI CTAG 3 cut(s) 176, 1110, 1611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.