Rroxscaffold_5G00366830

SET domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0004439
Physical Location & Seq
Forward (+)
48782136 .. 48782937
802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00366830.1

Sequence Viewer

Length: 576 bp
ATGGCGAGTTCACAGGAAGACGGGAAGCTCGAACGGTTTCGCAAAGGTTACAAAGTTAATGGGGTGGAGCTATGTGGGTGCGGGATCAAATACTCGATTCCGATAAAGGGTTTGGCATTTTTGCGGCTAATGTTTCGATGGGGTTCTATTAGTCGTGCCTTCGGATTTAGCAATAACTCCTATGAGATGGAGCGCCTCCGCAAGAATTCTTCTTGGAAGCCGTACCTTGATATGCTTCCCACCACTTTTGGCAATCCGCTTTGGTTTACCGATGATGAGCTTTTGGAGCTAAAAGGAACAACATTATCGTGGACCTCTCAACTCACCAACAATTTGTGGACCCGTGTGAATTTCAGCATATGGGGTGTGTGCTTTGAAGATTTCCTTTGGGCAAATTCTGTATTTTGGGCTCGTGCTTTGAACATTCCCCTTCCATACTCTTATGTATTTCCACAAGTTGAGGAAAAGAAGAATTGCAGTGCTACAAATGACAAAAGTTCGACGATTCTACTAATATGGTTAAAGCCAAATGGTGGGCAGAACGATATTAAGGCTGTGCAGTGTAACAATTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase SET

Protein Analysis

191

Amino Acids

22.03

Weight (kDa)

8.96

Isoelectric Point (pI)

20.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 533
AciI CCGC 4 cut(s) 81, 124, 199, 257
AclWI GGATC 1 cut(s) 92
AcsI RAATTY 3 cut(s) 205, 349, 394
AfaI GTAC 1 cut(s) 224
AfiI CCNNNNNNNGG 2 cut(s) 107, 533
AgsI TTSAA 2 cut(s) 377, 421
AluBI AGCT 4 cut(s) 28, 70, 280, 289
AluI AGCT 4 cut(s) 28, 70, 280, 289
AlwI GGATC 1 cut(s) 92
ApoI RAATTY 3 cut(s) 205, 349, 394
Asp700I GAANNNNTTC 1 cut(s) 36
AspLEI GCGC 1 cut(s) 195
AspS9I GGNCC 2 cut(s) 312, 339
AsuHPI GGTGA 1 cut(s) 316
AvaII GGWCC 2 cut(s) 312, 339
BanII GRGCYC 1 cut(s) 412
BauI CACGAG 1 cut(s) 411
BbsI GAAGAC 1 cut(s) 24
BccI CCATC 2 cut(s) 132, 181
BceAI ACGGC 1 cut(s) 205
BfoI RGCGCY 1 cut(s) 196
BisI GCNGC 1 cut(s) 125
BlsI GCNGC 1 cut(s) 126
Bme18I GGWCC 2 cut(s) 312, 339
BmgT120I GGNCC 2 cut(s) 312, 339
BmiI GGNNCC 1 cut(s) 341
BpiI GAAGAC 1 cut(s) 24
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 533
BseLI CCNNNNNNNGG 2 cut(s) 107, 533
BslI CCNNNNNNNGG 2 cut(s) 107, 533
Bsp1286I GDGCHC 1 cut(s) 412
Bsp143I GATC 1 cut(s) 84
BspACI CCGC 4 cut(s) 81, 124, 199, 257
BspLI GGNNCC 1 cut(s) 341
BspPI GGATC 1 cut(s) 92
BssMI GATC 1 cut(s) 84
BssSI CACGAG 1 cut(s) 411
Bst2BI CACGAG 1 cut(s) 411
Bst4CI ACNGT 1 cut(s) 36
BstH2I RGCGCY 1 cut(s) 196
BstHHI GCGC 1 cut(s) 195
BstKTI GATC 1 cut(s) 87
BstMBI GATC 1 cut(s) 84
BstMWI GCNNNNNNNGC 1 cut(s) 286
BstV2I GAAGAC 1 cut(s) 24
BtsI GCAGTG 2 cut(s) 484, 566
BtsIMutI CAGTG 2 cut(s) 484, 566
CfoI GCGC 1 cut(s) 195
Cfr13I GGNCC 2 cut(s) 312, 339
Csp6I GTAC 1 cut(s) 223
CspCI CAANNNNNGTGG 2 cut(s) 229, 264
CviJI RGCY 9 cut(s) 28, 70, 127, 220, 280, 289, 410, 526, 554
CviKI_1 RGCY 9 cut(s) 28, 70, 127, 220, 280, 289, 410, 526, 554
CviQI GTAC 1 cut(s) 223
DpnI GATC 1 cut(s) 86
DpnII GATC 1 cut(s) 84
Eco24I GRGCYC 1 cut(s) 412
Eco47I GGWCC 2 cut(s) 312, 339
EcoRI GAATTC 1 cut(s) 205
EcoT38I GRGCYC 1 cut(s) 412
FaiI YATR 8 cut(s) 73, 183, 233, 359, 361, 436, 444, 517
FalI AAGNNNNNCTT 2 cut(s) 369, 401
FauI CCCGC 1 cut(s) 74
FauNDI CATATG 1 cut(s) 359
Fnu4HI GCNGC 1 cut(s) 125
FriOI GRGCYC 1 cut(s) 412
Fsp4HI GCNGC 1 cut(s) 125
GlaI GCGC 1 cut(s) 194
GluI GCNGC 1 cut(s) 125
HaeII RGCGCY 1 cut(s) 196
HhaI GCGC 1 cut(s) 195
Hin6I GCGC 1 cut(s) 193
HinP1I GCGC 1 cut(s) 193
HinfI GANTC 2 cut(s) 97, 505
HphI GGTGA 1 cut(s) 316
Hpy166II GTNNAC 4 cut(s) 11, 267, 312, 339
Hpy188I TCNGA 2 cut(s) 102, 164
Hpy8I GTNNAC 4 cut(s) 11, 267, 312, 339
Hpy99I CGWCG 1 cut(s) 505
HpyAV CCTTC 2 cut(s) 169, 440
HpyCH4III ACNGT 1 cut(s) 36
HpyCH4V TGCA 2 cut(s) 477, 559
HpyF10VI GCNNNNNNNGC 1 cut(s) 286
HspAI GCGC 1 cut(s) 193
Kzo9I GATC 1 cut(s) 84
LmnI GCTCC 3 cut(s) 67, 190, 286
MaeIII GTNAC 2 cut(s) 47, 563
MalI GATC 1 cut(s) 86
MboI GATC 1 cut(s) 84
MboII GAAGA 4 cut(s) 29, 201, 389, 481
MhlI GDGCHC 1 cut(s) 412
MluCI AATT 6 cut(s) 205, 331, 349, 394, 472, 568
MnlI CCTC 3 cut(s) 206, 325, 454
MroXI GAANNNNTTC 1 cut(s) 36
MseI TTAA 3 cut(s) 57, 521, 549
MslI CAYNNNNRTG 1 cut(s) 307
MwoI GCNNNNNNNGC 1 cut(s) 286
NdeI CATATG 1 cut(s) 359
NdeII GATC 1 cut(s) 84
NlaIV GGNNCC 1 cut(s) 341
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PdmI GAANNNNTTC 1 cut(s) 36
PfeI GAWTC 2 cut(s) 97, 505
PflMI CCANNNNNTGG 1 cut(s) 533
PkrI GCNGC 1 cut(s) 126
PspN4I GGNNCC 1 cut(s) 341
PspPI GGNCC 2 cut(s) 312, 339
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
RseI CAYNNNNRTG 1 cut(s) 307
SaqAI TTAA 3 cut(s) 57, 521, 549
SatI GCNGC 1 cut(s) 125
Sau3AI GATC 1 cut(s) 84
Sau96I GGNCC 2 cut(s) 312, 339
SduI GDGCHC 1 cut(s) 412
SetI ASST 7 cut(s) 30, 49, 72, 228, 282, 291, 317
SinI GGWCC 2 cut(s) 312, 339
SmiMI CAYNNNNRTG 1 cut(s) 307
Sse9I AATT 6 cut(s) 205, 331, 349, 394, 472, 568
SsiI CCGC 4 cut(s) 81, 124, 199, 257
TaaI ACNGT 1 cut(s) 36
TaqI TCGA 4 cut(s) 30, 95, 136, 500
TasI AATT 6 cut(s) 205, 331, 349, 394, 472, 568
TauI GCSGC 1 cut(s) 127
TfiI GAWTC 2 cut(s) 97, 505
Tru1I TTAA 3 cut(s) 57, 521, 549
Tru9I TTAA 3 cut(s) 57, 521, 549
TscAI CASTG 2 cut(s) 484, 566
TspRI CASTG 2 cut(s) 484, 566
Van91I CCANNNNNTGG 1 cut(s) 533
VpaK11BI GGWCC 2 cut(s) 312, 339
XapI RAATTY 3 cut(s) 205, 349, 394
XmnI GAANNNNTTC 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.