Component of the Mediator complex, a coactivator involved in regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G55325 AT1G55325 AT1G55325 AT1G55325 |
| fragaria_vesca | FvH4_3g45550 FvH4_3g45550 FvH4_3g45550 FvH4_3g45550 FvH4_3g45550 FvH4_3g45550 FvH4_3g45550 FvH4_3g45550 FvH4_3g45550 FvH4_3g45550 FvH4_3g45550 FvH4_3g45550 |
| malus_domestica | MD03G1004100.v1.1 |
| prunus_persica | Prupe.6G003600_v2.0.a1 Prupe.6G003600_v2.0.a1 Prupe.6G003600_v2.0.a1 Prupe.6G003600_v2.0.a1 |
| pyrus_communis | pycom03g00420 |
| rosa_chinensis | RchiOBHm_Chr5g0083741 |
| rosa_laevigata | RLG00000037049 |
| rosa_multiflora | Rmu_sc0001287.1_g000006 |
| rosa_roxburghii | Rroxscaffold_1G00000840 |
| rosa_rugosa | Rorug05G0485500 Rorug05G0485600 Rorug05G0485700 |
| rosa_samantha | Rh5AG538600 Rh5BG564000 Rh5CG585900 Rh5DG572400 |
| rosa_wichuraiana | Rw5G050090 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 5362 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2471 |
| Acc36I | ACCTGC | 3 cut(s) | 2873, 3303, 5362 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1664, 3611 |
| AccBSI | CCGCTC | 1 cut(s) | 1786 |
| AccI | GTMKAC | 2 cut(s) | 1294, 4750 |
| AccII | CGCG | 1 cut(s) | 1363 |
| AclI | AACGTT | 1 cut(s) | 1162 |
| AcoI | YGGCCR | 1 cut(s) | 1023 |
| AcsI | RAATTY | 5 cut(s) | 503, 1562, 1865, 2005, 2092 |
| AcuI | CTGAAG | 8 cut(s) | 1058, 1410, 1830, 2325, 2382, 2708, 5174, 5396 |
| AcvI | CACGTG | 1 cut(s) | 5424 |
| AfaI | GTAC | 8 cut(s) | 126, 141, 1399, 2757, 4014, 4044, 5520, 5768 |
| AflII | CTTAAG | 3 cut(s) | 880, 3377, 3734 |
| AflIII | ACRYGT | 3 cut(s) | 136, 2487, 4428 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 5757 |
| AleI | CACNNNNGTG | 2 cut(s) | 2159, 5330 |
| Alw21I | GWGCWC | 9 cut(s) | 219, 406, 574, 2223, 2614, 3680, 5281, 5788, 5853 |
| Alw44I | GTGCAC | 2 cut(s) | 215, 5784 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 1625, 1664, 3056, 4813 |
| ApaLI | GTGCAC | 2 cut(s) | 215, 5784 |
| ApoI | RAATTY | 5 cut(s) | 503, 1562, 1865, 2005, 2092 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 4514, 4546 |
| AseI | ATTAAT | 2 cut(s) | 1557, 4920 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 14, 474 |
| AspLEI | GCGC | 2 cut(s) | 2601, 5740 |
| AsuC2I | CCSGG | 4 cut(s) | 1010, 3310, 4245, 5274 |
| AsuII | TTCGAA | 1 cut(s) | 3707 |
| AvaII | GGWCC | 9 cut(s) | 174, 855, 1067, 2033, 2346, 2810, 2875, 3718, 3812 |
| BaeGI | GKGCMC | 5 cut(s) | 219, 2897, 3842, 5159, 5788 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 4824, 4857 |
| BalI | TGGCCA | 1 cut(s) | 1025 |
| BamHI | GGATCC | 1 cut(s) | 199 |
| BanII | GRGCYC | 7 cut(s) | 1617, 2614, 2623, 3173, 3680, 5303, 5853 |
| BauI | CACGAG | 1 cut(s) | 4158 |
| BbrPI | CACGTG | 1 cut(s) | 5424 |
| BbsI | GAAGAC | 4 cut(s) | 604, 2081, 2412, 3876 |
| Bbv12I | GWGCWC | 9 cut(s) | 219, 406, 574, 2223, 2614, 3680, 5281, 5788, 5853 |
| BbvCI | CCTCAGC | 3 cut(s) | 993, 1825, 1887 |
| BceAI | ACGGC | 5 cut(s) | 134, 1744, 2420, 3024, 5776 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 5717, 5751 |
| BclI | TGATCA | 5 cut(s) | 934, 1708, 1870, 5230, 5593 |
| BcnI | CCSGG | 4 cut(s) | 1010, 3310, 4245, 5274 |
| BfrI | CTTAAG | 3 cut(s) | 880, 3377, 3734 |
| BfuAI | ACCTGC | 3 cut(s) | 2873, 3303, 5362 |
| BglII | AGATCT | 2 cut(s) | 586, 3932 |
| BmcAI | AGTACT | 1 cut(s) | 4014 |
| Bme18I | GGWCC | 9 cut(s) | 174, 855, 1067, 2033, 2346, 2810, 2875, 3718, 3812 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 5757 |
| BmiI | GGNNCC | 9 cut(s) | 201, 1069, 1255, 1614, 3417, 3575, 3719, 4458, 5347 |
| BmrI | ACTGGG | 2 cut(s) | 3554, 4290 |
| BmuI | ACTGGG | 2 cut(s) | 3554, 4290 |
| BoxI | GACNNNNGTC | 1 cut(s) | 5702 |
| BpiI | GAAGAC | 4 cut(s) | 604, 2081, 2412, 3876 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 3160, 3192, 3575, 3607 |
| BpmI | CTGGAG | 5 cut(s) | 1207, 1749, 1815, 5792, 5839 |
| Bpu10I | CCTNAGC | 6 cut(s) | 993, 1825, 1887, 3849, 4489, 5122 |
| Bpu14I | TTCGAA | 1 cut(s) | 3707 |
| BpuEI | CTTGAG | 9 cut(s) | 192, 273, 1999, 3443, 3621, 4097, 4587, 5161, 5265 |
| BpuMI | CCSGG | 4 cut(s) | 1010, 3310, 4245, 5274 |
| Bsa29I | ATCGAT | 1 cut(s) | 2522 |
| BsaAI | YACGTR | 1 cut(s) | 5424 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2571 |
| BsaWI | WCCGGW | 1 cut(s) | 2136 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 860, 890, 1891, 1921, 5254, 5284, 5524, 5554 |
| Bse3DI | GCAATG | 5 cut(s) | 2846, 2922, 3228, 3648, 5797 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2571 |
| BseCI | ATCGAT | 1 cut(s) | 2522 |
| BseJI | GATNNNNATC | 1 cut(s) | 2571 |
| BseMI | GCAATG | 5 cut(s) | 2846, 2922, 3228, 3648, 5797 |
| BseRI | GAGGAG | 4 cut(s) | 642, 4176, 5545, 5836 |
| BseSI | GKGCMC | 5 cut(s) | 219, 2897, 3842, 5159, 5788 |
| BseYI | CCCAGC | 1 cut(s) | 4335 |
| BsgI | GTGCAG | 3 cut(s) | 1638, 2256, 3262 |
| Bsh1236I | CGCG | 1 cut(s) | 1363 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2141 |
| BshVI | ATCGAT | 1 cut(s) | 2522 |
| BsiEI | CGRYCG | 1 cut(s) | 2141 |
| BsiHKAI | GWGCWC | 9 cut(s) | 219, 406, 574, 2223, 2614, 3680, 5281, 5788, 5853 |
| BsiSI | CCGG | 6 cut(s) | 989, 1010, 2137, 3310, 4244, 5273 |
| BslFI | GGGAC | 5 cut(s) | 322, 359, 992, 3731, 4868 |
| BsmBI | CGTCTC | 2 cut(s) | 3180, 4239 |
| BsmFI | GGGAC | 5 cut(s) | 322, 359, 992, 3731, 4868 |
| BsmI | GAATGC | 7 cut(s) | 265, 607, 2373, 3667, 4285, 4567, 4778 |
| Bsp119I | TTCGAA | 1 cut(s) | 3707 |
| Bsp1407I | TGTACA | 1 cut(s) | 139 |
| Bsp19I | CCATGG | 3 cut(s) | 1074, 1449, 1773 |
| BspDI | ATCGAT | 1 cut(s) | 2522 |
| BspFNI | CGCG | 1 cut(s) | 1363 |
| BspHI | TCATGA | 1 cut(s) | 5631 |
| BspLI | GGNNCC | 9 cut(s) | 201, 1069, 1255, 1614, 3417, 3575, 3719, 4458, 5347 |
| BspMAI | CTGCAG | 9 cut(s) | 298, 1422, 2959, 2994, 3300, 4050, 4560, 4797, 4818 |
| BspMI | ACCTGC | 3 cut(s) | 2873, 3303, 5362 |
| BspQI | GCTCTTC | 4 cut(s) | 465, 1773, 1849, 4831 |
| BspT104I | TTCGAA | 1 cut(s) | 3707 |
| BspTI | CTTAAG | 3 cut(s) | 880, 3377, 3734 |
| BsrBI | CCGCTC | 1 cut(s) | 1786 |
| BsrDI | GCAATG | 5 cut(s) | 2846, 2922, 3228, 3648, 5797 |
| BsrGI | TGTACA | 1 cut(s) | 139 |
| BssSI | CACGAG | 1 cut(s) | 4158 |
| BssT1I | CCWWGG | 7 cut(s) | 194, 826, 1074, 1449, 1773, 3957, 4850 |
| Bst2BI | CACGAG | 1 cut(s) | 4158 |
| Bst6I | CTCTTC | 9 cut(s) | 348, 465, 922, 1034, 1773, 1849, 3237, 4831, 5415 |
| BstAFI | CTTAAG | 3 cut(s) | 880, 3377, 3734 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 767, 3494, 4792 |
| BstAUI | TGTACA | 1 cut(s) | 139 |
| BstBAI | YACGTR | 1 cut(s) | 5424 |
| BstBI | TTCGAA | 1 cut(s) | 3707 |
| BstDSI | CCRYGG | 3 cut(s) | 1074, 1449, 1773 |
| BstEII | GGTNACC | 2 cut(s) | 1577, 2462 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 374 |
| BstFNI | CGCG | 1 cut(s) | 1363 |
| BstHHI | GCGC | 2 cut(s) | 2601, 5740 |
| BstMCI | CGRYCG | 1 cut(s) | 2141 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 5702 |
| BstPI | GGTNACC | 2 cut(s) | 1577, 2462 |
| BstSLI | GKGCMC | 5 cut(s) | 219, 2897, 3842, 5159, 5788 |
| BstUI | CGCG | 1 cut(s) | 1363 |
| BstV2I | GAAGAC | 4 cut(s) | 604, 2081, 2412, 3876 |
| BstX2I | RGATCY | 6 cut(s) | 199, 586, 1499, 2063, 3932, 4610 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 121, 3223, 3569 |
| BstYI | RGATCY | 6 cut(s) | 199, 586, 1499, 2063, 3932, 4610 |
| Bsu15I | ATCGAT | 1 cut(s) | 2522 |
| BsuTUI | ATCGAT | 1 cut(s) | 2522 |
| BtgI | CCRYGG | 3 cut(s) | 1074, 1449, 1773 |
| BtgZI | GCGATG | 1 cut(s) | 1683 |
| BtsI | GCAGTG | 5 cut(s) | 1005, 3775, 4185, 5430, 5786 |
| BveI | ACCTGC | 3 cut(s) | 2873, 3303, 5362 |
| CaiI | CAGNNNCTG | 4 cut(s) | 1625, 1664, 3056, 4813 |
| CciI | TCATGA | 1 cut(s) | 5631 |
| CfoI | GCGC | 2 cut(s) | 2601, 5740 |
| ClaI | ATCGAT | 1 cut(s) | 2522 |
| CseI | GACGC | 1 cut(s) | 1346 |
| CsiI | ACCWGGT | 1 cut(s) | 4459 |
| Csp6I | GTAC | 8 cut(s) | 125, 140, 1398, 2756, 4013, 4043, 5519, 5767 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 7, 42, 604, 639 |
| CviQI | GTAC | 8 cut(s) | 125, 140, 1398, 2756, 4013, 4043, 5519, 5767 |
| DraI | TTTAAA | 1 cut(s) | 4075 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2471 |
| DriI | GACNNNNNGTC | 1 cut(s) | 5757 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2471 |
| EaeI | YGGCCR | 1 cut(s) | 1023 |
| Eam1104I | CTCTTC | 9 cut(s) | 348, 465, 922, 1034, 1773, 1849, 3237, 4831, 5415 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 5757 |
| EarI | CTCTTC | 9 cut(s) | 348, 465, 922, 1034, 1773, 1849, 3237, 4831, 5415 |
| Ecl136II | GAGCTC | 3 cut(s) | 2612, 3678, 5851 |
| Eco130I | CCWWGG | 7 cut(s) | 194, 826, 1074, 1449, 1773, 3957, 4850 |
| Eco24I | GRGCYC | 7 cut(s) | 1617, 2614, 2623, 3173, 3680, 5303, 5853 |
| Eco32I | GATATC | 2 cut(s) | 1336, 1543 |
| Eco47I | GGWCC | 9 cut(s) | 174, 855, 1067, 2033, 2346, 2810, 2875, 3718, 3812 |
| Eco53kI | GAGCTC | 3 cut(s) | 2612, 3678, 5851 |
| Eco57I | CTGAAG | 8 cut(s) | 1058, 1410, 1830, 2325, 2382, 2708, 5174, 5396 |
| Eco72I | CACGTG | 1 cut(s) | 5424 |
| Eco91I | GGTNACC | 2 cut(s) | 1577, 2462 |
| EcoICRI | GAGCTC | 3 cut(s) | 2612, 3678, 5851 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 374 |
| EcoO109I | RGGNCCY | 2 cut(s) | 855, 3718 |
| EcoO65I | GGTNACC | 2 cut(s) | 1577, 2462 |
| EcoRV | GATATC | 2 cut(s) | 1336, 1543 |
| EcoT14I | CCWWGG | 7 cut(s) | 194, 826, 1074, 1449, 1773, 3957, 4850 |
| EcoT22I | ATGCAT | 2 cut(s) | 1429, 3667 |
| EcoT38I | GRGCYC | 7 cut(s) | 1617, 2614, 2623, 3173, 3680, 5303, 5853 |
| ErhI | CCWWGG | 7 cut(s) | 194, 826, 1074, 1449, 1773, 3957, 4850 |
| Esp3I | CGTCTC | 2 cut(s) | 3180, 4239 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 810, 842 |
| FaqI | GGGAC | 5 cut(s) | 322, 359, 992, 3731, 4868 |
| FauI | CCCGC | 1 cut(s) | 5406 |
| FauNDI | CATATG | 2 cut(s) | 2029, 3430 |
| FbaI | TGATCA | 5 cut(s) | 934, 1708, 1870, 5230, 5593 |
| FblI | GTMKAC | 2 cut(s) | 1294, 4750 |
| FriOI | GRGCYC | 7 cut(s) | 1617, 2614, 2623, 3173, 3680, 5303, 5853 |
| GlaI | GCGC | 2 cut(s) | 2600, 5739 |
| GsaI | CCCAGC | 1 cut(s) | 4339 |
| GsuI | CTGGAG | 5 cut(s) | 1207, 1749, 1815, 5792, 5839 |
| HapII | CCGG | 6 cut(s) | 989, 1010, 2137, 3310, 4244, 5273 |
| HgaI | GACGC | 1 cut(s) | 1346 |
| HhaI | GCGC | 2 cut(s) | 2601, 5740 |
| Hin6I | GCGC | 2 cut(s) | 2599, 5738 |
| HinP1I | GCGC | 2 cut(s) | 2599, 5738 |
| HincII | GTYRAC | 2 cut(s) | 1678, 1837 |
| HindII | GTYRAC | 2 cut(s) | 1678, 1837 |
| HindIII | AAGCTT | 2 cut(s) | 1747, 5668 |
| HpaII | CCGG | 6 cut(s) | 989, 1010, 2137, 3310, 4244, 5273 |
| HpyCH4IV | ACGT | 2 cut(s) | 1162, 5423 |
| HpySE526I | ACGT | 2 cut(s) | 1162, 5423 |
| HspAI | GCGC | 2 cut(s) | 2599, 5738 |
| Ksp22I | TGATCA | 5 cut(s) | 934, 1708, 1870, 5230, 5593 |
| LguI | GCTCTTC | 4 cut(s) | 465, 1773, 1849, 4831 |
| MabI | ACCWGGT | 1 cut(s) | 4459 |
| MaeII | ACGT | 2 cut(s) | 1162, 5423 |
| MbiI | CCGCTC | 1 cut(s) | 1786 |
| MfeI | CAATTG | 2 cut(s) | 5220, 5226 |
| MflI | RGATCY | 6 cut(s) | 199, 586, 1499, 2063, 3932, 4610 |
| MlsI | TGGCCA | 1 cut(s) | 1025 |
| MluNI | TGGCCA | 1 cut(s) | 1025 |
| MmeI | TCCRAC | 3 cut(s) | 2060, 3535, 4749 |
| Mox20I | TGGCCA | 1 cut(s) | 1025 |
| Mph1103I | ATGCAT | 2 cut(s) | 1429, 3667 |
| MroXI | GAANNNNTTC | 2 cut(s) | 14, 474 |
| MscI | TGGCCA | 1 cut(s) | 1025 |
| MslI | CAYNNNNRTG | 5 cut(s) | 2159, 2232, 2577, 4226, 5330 |
| Msp20I | TGGCCA | 1 cut(s) | 1025 |
| MspA1I | CMGCKG | 1 cut(s) | 5416 |
| MspCI | CTTAAG | 3 cut(s) | 880, 3377, 3734 |
| MspI | CCGG | 6 cut(s) | 989, 1010, 2137, 3310, 4244, 5273 |
| MunI | CAATTG | 2 cut(s) | 5220, 5226 |
| Mva1269I | GAATGC | 7 cut(s) | 265, 607, 2373, 3667, 4285, 4567, 4778 |
| MvnI | CGCG | 1 cut(s) | 1363 |
| NciI | CCSGG | 4 cut(s) | 1010, 3310, 4245, 5274 |
| NcoI | CCATGG | 3 cut(s) | 1074, 1449, 1773 |
| NdeI | CATATG | 2 cut(s) | 2029, 3430 |
| NlaIV | GGNNCC | 9 cut(s) | 201, 1069, 1255, 1614, 3417, 3575, 3719, 4458, 5347 |
| NmuCI | GTSAC | 8 cut(s) | 848, 1577, 2462, 2909, 3052, 3773, 4054, 4482 |
| NsiI | ATGCAT | 2 cut(s) | 1429, 3667 |
| NspV | TTCGAA | 1 cut(s) | 3707 |
| OliI | CACNNNNGTG | 2 cut(s) | 2159, 5330 |
| PaeI | GCATGC | 4 cut(s) | 545, 2086, 4824, 5389 |
| PagI | TCATGA | 1 cut(s) | 5631 |
| PaqCI | CACCTGC | 1 cut(s) | 5362 |
| PasI | CCCWGGG | 1 cut(s) | 341 |
| PciI | ACATGT | 3 cut(s) | 136, 2487, 4428 |
| PciSI | GCTCTTC | 4 cut(s) | 465, 1773, 1849, 4831 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1159 |
| PctI | GAATGC | 7 cut(s) | 265, 607, 2373, 3667, 4285, 4567, 4778 |
| PdmI | GAANNNNTTC | 2 cut(s) | 14, 474 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1664, 3611 |
| PfoI | TCCNGGA | 1 cut(s) | 2107 |
| PmaCI | CACGTG | 1 cut(s) | 5424 |
| PmlI | CACGTG | 1 cut(s) | 5424 |
| Ppu21I | YACGTR | 1 cut(s) | 5424 |
| PpuMI | RGGWCCY | 2 cut(s) | 855, 3718 |
| PscI | ACATGT | 3 cut(s) | 136, 2487, 4428 |
| PshAI | GACNNNNGTC | 1 cut(s) | 5702 |
| PshBI | ATTAAT | 2 cut(s) | 1557, 4920 |
| Psp124BI | GAGCTC | 3 cut(s) | 2614, 3680, 5853 |
| Psp1406I | AACGTT | 1 cut(s) | 1162 |
| Psp5II | RGGWCCY | 2 cut(s) | 855, 3718 |
| PspCI | CACGTG | 1 cut(s) | 5424 |
| PspEI | GGTNACC | 2 cut(s) | 1577, 2462 |
| PspFI | CCCAGC | 1 cut(s) | 4335 |
| PspN4I | GGNNCC | 9 cut(s) | 201, 1069, 1255, 1614, 3417, 3575, 3719, 4458, 5347 |
| PspPPI | RGGWCCY | 2 cut(s) | 855, 3718 |
| PstI | CTGCAG | 9 cut(s) | 298, 1422, 2959, 2994, 3300, 4050, 4560, 4797, 4818 |
| PstNI | CAGNNNCTG | 4 cut(s) | 1625, 1664, 3056, 4813 |
| PsuI | RGATCY | 6 cut(s) | 199, 586, 1499, 2063, 3932, 4610 |
| PvuII | CAGCTG | 1 cut(s) | 5416 |
| RsaI | GTAC | 8 cut(s) | 126, 141, 1399, 2757, 4014, 4044, 5520, 5768 |
| RsaNI | GTAC | 8 cut(s) | 125, 140, 1398, 2756, 4013, 4043, 5519, 5767 |
| RseI | CAYNNNNRTG | 5 cut(s) | 2159, 2232, 2577, 4226, 5330 |
| SacI | GAGCTC | 3 cut(s) | 2614, 3680, 5853 |
| SapI | GCTCTTC | 4 cut(s) | 465, 1773, 1849, 4831 |
| ScaI | AGTACT | 1 cut(s) | 4014 |
| SexAI | ACCWGGT | 1 cut(s) | 4459 |
| SfuI | TTCGAA | 1 cut(s) | 3707 |
| SinI | GGWCC | 9 cut(s) | 174, 855, 1067, 2033, 2346, 2810, 2875, 3718, 3812 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 2159, 2232, 2577, 4226, 5330 |
| SphI | GCATGC | 4 cut(s) | 545, 2086, 4824, 5389 |
| SspI | AATATT | 1 cut(s) | 4006 |
| SstI | GAGCTC | 3 cut(s) | 2614, 3680, 5853 |
| StyI | CCWWGG | 7 cut(s) | 194, 826, 1074, 1449, 1773, 3957, 4850 |
| TaiI | ACGT | 2 cut(s) | 1165, 5426 |
| TaqI | TCGA | 5 cut(s) | 1987, 2141, 2522, 3707, 4273 |
| TaqII | GACCGA | 1 cut(s) | 3892 |
| TatI | WGTACW | 2 cut(s) | 139, 4012 |
| TauI | GCSGC | 4 cut(s) | 265, 368, 1786, 4969 |
| TseFI | GTSAC | 8 cut(s) | 848, 1577, 2462, 2909, 3052, 3773, 4054, 4482 |
| Tsp45I | GTSAC | 8 cut(s) | 848, 1577, 2462, 2909, 3052, 3773, 4054, 4482 |
| TspGWI | ACGGA | 3 cut(s) | 1945, 3327, 4665 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1664, 3611 |
| Vha464I | CTTAAG | 3 cut(s) | 880, 3377, 3734 |
| VneI | GTGCAC | 2 cut(s) | 215, 5784 |
| VpaK11BI | GGWCC | 9 cut(s) | 174, 855, 1067, 2033, 2346, 2810, 2875, 3718, 3812 |
| VspI | ATTAAT | 2 cut(s) | 1557, 4920 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 374 |
| XapI | RAATTY | 5 cut(s) | 503, 1562, 1865, 2005, 2092 |
| XbaI | TCTAGA | 2 cut(s) | 589, 4468 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2885 |
| XmiI | GTMKAC | 2 cut(s) | 1294, 4750 |
| XmnI | GAANNNNTTC | 2 cut(s) | 14, 474 |
| ZrmI | AGTACT | 1 cut(s) | 4014 |
| Zsp2I | ATGCAT | 2 cut(s) | 1429, 3667 |