Component of the Mediator complex, a coactivator involved in regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G55325 AT1G55325 AT1G55325 AT1G55325 |
| fragaria_vesca | FvH4_3g45550 FvH4_3g45550 FvH4_3g45550 FvH4_3g45550 FvH4_3g45550 FvH4_3g45550 FvH4_3g45550 FvH4_3g45550 FvH4_3g45550 FvH4_3g45550 FvH4_3g45550 FvH4_3g45550 |
| malus_domestica | MD03G1004100.v1.1 |
| prunus_persica | Prupe.6G003600_v2.0.a1 Prupe.6G003600_v2.0.a1 Prupe.6G003600_v2.0.a1 Prupe.6G003600_v2.0.a1 |
| pyrus_communis | pycom03g00420 |
| rosa_chinensis | RchiOBHm_Chr5g0083741 |
| rosa_laevigata | RLG00000037049 |
| rosa_multiflora | Rmu_sc0001287.1_g000006 |
| rosa_roxburghii | Rroxscaffold_1G00000840 |
| rosa_rugosa | Rorug05G0485500 Rorug05G0485600 Rorug05G0485700 |
| rosa_samantha | Rh5AG538600 Rh5BG564000 Rh5CG585900 Rh5DG572400 |
| rosa_wichuraiana | Rw5G050090 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 5392 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 2468, 4803 |
| Acc36I | ACCTGC | 2 cut(s) | 2867, 5392 |
| AccB1I | GGYRCC | 1 cut(s) | 3078 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 1364, 1661, 2105, 3638 |
| AccI | GTMKAC | 2 cut(s) | 1291, 4780 |
| AccIII | TCCGGA | 1 cut(s) | 223 |
| AciI | CCGC | 7 cut(s) | 27, 62, 2273, 2282, 3446, 4607, 4996 |
| AcoI | YGGCCR | 3 cut(s) | 259, 1020, 4002 |
| AcsI | RAATTY | 8 cut(s) | 619, 742, 871, 1559, 1862, 2002, 2089, 2323 |
| AcuI | CTGAAG | 8 cut(s) | 543, 862, 1407, 1827, 2322, 2702, 5204, 5426 |
| AcyI | GRCGYC | 1 cut(s) | 2384 |
| AdeI | CACNNNGTG | 2 cut(s) | 467, 1160 |
| AfeI | AGCGCT | 1 cut(s) | 405 |
| AflII | CTTAAG | 3 cut(s) | 731, 3404, 3761 |
| AflIII | ACRYGT | 1 cut(s) | 4452 |
| AgeI | ACCGGT | 1 cut(s) | 4865 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 5787 |
| AjiI | CACGTC | 2 cut(s) | 795, 4275 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 807, 839, 929, 961, 2026, 2058 |
| AleI | CACNNNNGTG | 2 cut(s) | 2156, 5360 |
| Alw21I | GWGCWC | 3 cut(s) | 574, 2611, 5311 |
| Ama87I | CYCGRG | 2 cut(s) | 1822, 2011 |
| Aor13HI | TCCGGA | 1 cut(s) | 223 |
| Aor51HI | AGCGCT | 1 cut(s) | 405 |
| ApoI | RAATTY | 8 cut(s) | 619, 742, 871, 1559, 1862, 2002, 2089, 2323 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 4538, 4570 |
| AseI | ATTAAT | 2 cut(s) | 1554, 4950 |
| AsiGI | ACCGGT | 1 cut(s) | 4865 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 159, 474 |
| AspLEI | GCGC | 3 cut(s) | 406, 2239, 2598 |
| AsuC2I | CCSGG | 3 cut(s) | 851, 3337, 4485 |
| AsuII | TTCGAA | 2 cut(s) | 3734, 3983 |
| AvaI | CYCGRG | 2 cut(s) | 1822, 2011 |
| BaeGI | GKGCMC | 2 cut(s) | 3869, 5189 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 4854, 4887 |
| BamHI | GGATCC | 1 cut(s) | 199 |
| BanI | GGYRCC | 1 cut(s) | 3078 |
| BanII | GRGCYC | 5 cut(s) | 1614, 2611, 3707, 5311, 5333 |
| BarI | GAAGNNNNNNTAC | 8 cut(s) | 2179, 2211, 2881, 2913, 3826, 3858, 5023, 5055 |
| BauI | CACGAG | 1 cut(s) | 1359 |
| BbsI | GAAGAC | 4 cut(s) | 23, 2078, 2409, 4248 |
| Bbv12I | GWGCWC | 3 cut(s) | 574, 2611, 5311 |
| BbvCI | CCTCAGC | 2 cut(s) | 990, 1884 |
| BceAI | ACGGC | 2 cut(s) | 246, 2845 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1712, 1746 |
| BciVI | GTATCC | 2 cut(s) | 1414, 4855 |
| BclI | TGATCA | 5 cut(s) | 931, 1705, 1867, 5260, 5623 |
| BcnI | CCSGG | 3 cut(s) | 851, 3337, 4485 |
| BfoI | RGCGCY | 2 cut(s) | 407, 2599 |
| BfrI | CTTAAG | 3 cut(s) | 731, 3404, 3761 |
| BfuAI | ACCTGC | 2 cut(s) | 2867, 5392 |
| BfuI | GTATCC | 2 cut(s) | 1414, 4855 |
| BglII | AGATCT | 1 cut(s) | 3959 |
| BmcAI | AGTACT | 1 cut(s) | 4041 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 5787 |
| BmeT110I | CYCGRG | 2 cut(s) | 1822, 2011 |
| BmgBI | CACGTC | 2 cut(s) | 795, 4275 |
| BmrI | ACTGGG | 3 cut(s) | 1676, 3581, 4314 |
| BmuI | ACTGGG | 3 cut(s) | 1676, 3581, 4314 |
| BpiI | GAAGAC | 4 cut(s) | 23, 2078, 2409, 4248 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3602, 3634 |
| BpmI | CTGGAG | 5 cut(s) | 1204, 4251, 4410, 5822, 5869 |
| Bpu10I | CCTNAGC | 3 cut(s) | 990, 1884, 3876 |
| Bpu14I | TTCGAA | 2 cut(s) | 3734, 3983 |
| BpuMI | CCSGG | 3 cut(s) | 851, 3337, 4485 |
| Bsa29I | ATCGAT | 1 cut(s) | 2519 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2568 |
| BsaHI | GRCGYC | 1 cut(s) | 2384 |
| BsaI | GGTCTC | 1 cut(s) | 5542 |
| BsaWI | WCCGGW | 3 cut(s) | 223, 2133, 4865 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1888, 1918, 3249, 3279 |
| Bse118I | RCCGGY | 1 cut(s) | 4865 |
| Bse3DI | GCAATG | 6 cut(s) | 2840, 2916, 3059, 3255, 3675, 5042 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2568 |
| BseAI | TCCGGA | 1 cut(s) | 223 |
| BseCI | ATCGAT | 1 cut(s) | 2519 |
| BseJI | GATNNNNATC | 1 cut(s) | 2568 |
| BseMI | GCAATG | 6 cut(s) | 2840, 2916, 3059, 3255, 3675, 5042 |
| BseRI | GAGGAG | 4 cut(s) | 368, 642, 2521, 5575 |
| BseSI | GKGCMC | 2 cut(s) | 3869, 5189 |
| BseYI | CCCAGC | 2 cut(s) | 4359, 5411 |
| BsgI | GTGCAG | 3 cut(s) | 1635, 5249, 5799 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2138 |
| BshNI | GGYRCC | 1 cut(s) | 3078 |
| BshTI | ACCGGT | 1 cut(s) | 4865 |
| BshVI | ATCGAT | 1 cut(s) | 2519 |
| BsiEI | CGRYCG | 1 cut(s) | 2138 |
| BsiHKAI | GWGCWC | 3 cut(s) | 574, 2611, 5311 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1822, 2011 |
| BsiSI | CCGG | 8 cut(s) | 224, 850, 986, 1023, 2134, 3337, 4485, 4866 |
| BslFI | GGGAC | 9 cut(s) | 359, 989, 2603, 2954, 3758, 4285, 4809, 4898, 5353 |
| BsmBI | CGTCTC | 2 cut(s) | 1772, 5720 |
| BsmFI | GGGAC | 9 cut(s) | 359, 989, 2603, 2954, 3758, 4285, 4809, 4898, 5353 |
| BsmI | GAATGC | 3 cut(s) | 607, 1133, 4309 |
| Bso31I | GGTCTC | 1 cut(s) | 5542 |
| BsoBI | CYCGRG | 2 cut(s) | 1822, 2011 |
| Bsp119I | TTCGAA | 2 cut(s) | 3734, 3983 |
| Bsp1286I | GDGCHC | 8 cut(s) | 574, 1614, 2611, 3707, 3869, 5189, 5311, 5333 |
| Bsp13I | TCCGGA | 1 cut(s) | 223 |
| Bsp1407I | TGTACA | 2 cut(s) | 2749, 3969 |
| Bsp19I | CCATGG | 2 cut(s) | 1446, 1770 |
| BspACI | CCGC | 7 cut(s) | 27, 62, 2273, 2282, 3446, 4607, 4996 |
| BspDI | ATCGAT | 1 cut(s) | 2519 |
| BspEI | TCCGGA | 1 cut(s) | 223 |
| BspHI | TCATGA | 1 cut(s) | 5661 |
| BspMAI | CTGCAG | 8 cut(s) | 298, 1419, 1768, 3009, 3327, 4077, 4827, 4848 |
| BspMI | ACCTGC | 2 cut(s) | 2867, 5392 |
| BspQI | GCTCTTC | 3 cut(s) | 465, 1846, 4861 |
| BspT104I | TTCGAA | 2 cut(s) | 3734, 3983 |
| BspT107I | GGYRCC | 1 cut(s) | 3078 |
| BspTI | CTTAAG | 3 cut(s) | 731, 3404, 3761 |
| BspTNI | GGTCTC | 1 cut(s) | 5542 |
| BsrDI | GCAATG | 6 cut(s) | 2840, 2916, 3059, 3255, 3675, 5042 |
| BsrFI | RCCGGY | 1 cut(s) | 4865 |
| BsrGI | TGTACA | 2 cut(s) | 2749, 3969 |
| BssAI | RCCGGY | 1 cut(s) | 4865 |
| BssNI | GRCGYC | 1 cut(s) | 2384 |
| BssSI | CACGAG | 1 cut(s) | 1359 |
| BssT1I | CCWWGG | 5 cut(s) | 194, 823, 1446, 1770, 5371 |
| Bst2BI | CACGAG | 1 cut(s) | 1359 |
| Bst6I | CTCTTC | 6 cut(s) | 465, 519, 919, 1770, 1846, 4861 |
| BstACI | GRCGYC | 1 cut(s) | 2384 |
| BstAFI | CTTAAG | 3 cut(s) | 731, 3404, 3761 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 4822 |
| BstAUI | TGTACA | 2 cut(s) | 2749, 3969 |
| BstBI | TTCGAA | 2 cut(s) | 3734, 3983 |
| BstDSI | CCRYGG | 2 cut(s) | 1446, 1770 |
| BstEII | GGTNACC | 1 cut(s) | 2459 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 374, 4266 |
| BstH2I | RGCGCY | 2 cut(s) | 407, 2599 |
| BstHHI | GCGC | 3 cut(s) | 406, 2239, 2598 |
| BstMCI | CGRYCG | 1 cut(s) | 2138 |
| BstNSI | RCATGY | 7 cut(s) | 545, 2984, 3567, 4456, 5419, 5457, 5735 |
| BstPI | GGTNACC | 1 cut(s) | 2459 |
| BstSLI | GKGCMC | 2 cut(s) | 3869, 5189 |
| BstV2I | GAAGAC | 4 cut(s) | 23, 2078, 2409, 4248 |
| BstX2I | RGATCY | 4 cut(s) | 199, 1496, 3959, 4229 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 121, 3596, 4275, 5683 |
| BstYI | RGATCY | 4 cut(s) | 199, 1496, 3959, 4229 |
| Bsu15I | ATCGAT | 1 cut(s) | 2519 |
| BsuI | GTATCC | 2 cut(s) | 1414, 4855 |
| BsuTUI | ATCGAT | 1 cut(s) | 2519 |
| BtgI | CCRYGG | 2 cut(s) | 1446, 1770 |
| BtgZI | GCGATG | 2 cut(s) | 117, 1680 |
| BtrI | CACGTC | 2 cut(s) | 795, 4275 |
| BtsI | GCAGTG | 4 cut(s) | 1002, 3802, 5460, 5816 |
| BveI | ACCTGC | 2 cut(s) | 2867, 5392 |
| CciI | TCATGA | 1 cut(s) | 5661 |
| CfoI | GCGC | 3 cut(s) | 406, 2239, 2598 |
| Cfr10I | RCCGGY | 1 cut(s) | 4865 |
| ClaI | ATCGAT | 1 cut(s) | 2519 |
| CseI | GACGC | 4 cut(s) | 1343, 1789, 2373, 5737 |
| CsiI | ACCWGGT | 1 cut(s) | 5095 |
| CspAI | ACCGGT | 1 cut(s) | 4865 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 776, 811 |
| DraI | TTTAAA | 1 cut(s) | 4102 |
| DraIII | CACNNNGTG | 2 cut(s) | 467, 1160 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 2468, 4803 |
| DriI | GACNNNNNGTC | 1 cut(s) | 5787 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 2468, 4803 |
| EaeI | YGGCCR | 3 cut(s) | 259, 1020, 4002 |
| Eam1104I | CTCTTC | 6 cut(s) | 465, 519, 919, 1770, 1846, 4861 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 5787 |
| EarI | CTCTTC | 6 cut(s) | 465, 519, 919, 1770, 1846, 4861 |
| Ecl136II | GAGCTC | 2 cut(s) | 2609, 5309 |
| Eco130I | CCWWGG | 5 cut(s) | 194, 823, 1446, 1770, 5371 |
| Eco24I | GRGCYC | 5 cut(s) | 1614, 2611, 3707, 5311, 5333 |
| Eco31I | GGTCTC | 1 cut(s) | 5542 |
| Eco32I | GATATC | 2 cut(s) | 1333, 1540 |
| Eco47III | AGCGCT | 1 cut(s) | 405 |
| Eco53kI | GAGCTC | 2 cut(s) | 2609, 5309 |
| Eco57I | CTGAAG | 8 cut(s) | 543, 862, 1407, 1827, 2322, 2702, 5204, 5426 |
| Eco88I | CYCGRG | 2 cut(s) | 1822, 2011 |
| Eco91I | GGTNACC | 1 cut(s) | 2459 |
| EcoICRI | GAGCTC | 2 cut(s) | 2609, 5309 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 374, 4266 |
| EcoO109I | RGGNCCY | 1 cut(s) | 5878 |
| EcoO65I | GGTNACC | 1 cut(s) | 2459 |
| EcoRV | GATATC | 2 cut(s) | 1333, 1540 |
| EcoT14I | CCWWGG | 5 cut(s) | 194, 823, 1446, 1770, 5371 |
| EcoT22I | ATGCAT | 3 cut(s) | 460, 3694, 4715 |
| EcoT38I | GRGCYC | 5 cut(s) | 1614, 2611, 3707, 5311, 5333 |
| ErhI | CCWWGG | 5 cut(s) | 194, 823, 1446, 1770, 5371 |
| Esp3I | CGTCTC | 2 cut(s) | 1772, 5720 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 807, 839, 3011, 3043 |
| FaqI | GGGAC | 9 cut(s) | 359, 989, 2603, 2954, 3758, 4285, 4809, 4898, 5353 |
| FauI | CCCGC | 1 cut(s) | 69 |
| FauNDI | CATATG | 1 cut(s) | 2026 |
| FbaI | TGATCA | 5 cut(s) | 931, 1705, 1867, 5260, 5623 |
| FblI | GTMKAC | 2 cut(s) | 1291, 4780 |
| FriOI | GRGCYC | 5 cut(s) | 1614, 2611, 3707, 5311, 5333 |
| GlaI | GCGC | 3 cut(s) | 405, 2238, 2597 |
| GsaI | CCCAGC | 2 cut(s) | 4363, 5415 |
| GsuI | CTGGAG | 5 cut(s) | 1204, 4251, 4410, 5822, 5869 |
| HaeII | RGCGCY | 2 cut(s) | 407, 2599 |
| HapII | CCGG | 8 cut(s) | 224, 850, 986, 1023, 2134, 3337, 4485, 4866 |
| HgaI | GACGC | 4 cut(s) | 1343, 1789, 2373, 5737 |
| HhaI | GCGC | 3 cut(s) | 406, 2239, 2598 |
| Hin1I | GRCGYC | 1 cut(s) | 2384 |
| Hin6I | GCGC | 3 cut(s) | 404, 2237, 2596 |
| HinP1I | GCGC | 3 cut(s) | 404, 2237, 2596 |
| HincII | GTYRAC | 3 cut(s) | 1456, 1675, 3616 |
| HindII | GTYRAC | 3 cut(s) | 1456, 1675, 3616 |
| HindIII | AAGCTT | 3 cut(s) | 728, 1744, 3786 |
| HpaII | CCGG | 8 cut(s) | 224, 850, 986, 1023, 2134, 3337, 4485, 4866 |
| HpyCH4IV | ACGT | 3 cut(s) | 794, 1159, 4274 |
| HpySE526I | ACGT | 3 cut(s) | 794, 1159, 4274 |
| Hsp92I | GRCGYC | 1 cut(s) | 2384 |
| HspAI | GCGC | 3 cut(s) | 404, 2237, 2596 |
| Kpn2I | TCCGGA | 1 cut(s) | 223 |
| Ksp22I | TGATCA | 5 cut(s) | 931, 1705, 1867, 5260, 5623 |
| LguI | GCTCTTC | 3 cut(s) | 465, 1846, 4861 |
| MabI | ACCWGGT | 1 cut(s) | 5095 |
| MaeII | ACGT | 3 cut(s) | 794, 1159, 4274 |
| MfeI | CAATTG | 2 cut(s) | 5250, 5256 |
| MflI | RGATCY | 4 cut(s) | 199, 1496, 3959, 4229 |
| MhlI | GDGCHC | 8 cut(s) | 574, 1614, 2611, 3707, 3869, 5189, 5311, 5333 |
| MmeI | TCCRAC | 3 cut(s) | 2057, 3562, 5456 |
| Mph1103I | ATGCAT | 3 cut(s) | 460, 3694, 4715 |
| MroI | TCCGGA | 1 cut(s) | 223 |
| MroXI | GAANNNNTTC | 2 cut(s) | 159, 474 |
| MslI | CAYNNNNRTG | 3 cut(s) | 2156, 2574, 5360 |
| MspA1I | CMGCKG | 2 cut(s) | 121, 5446 |
| MspCI | CTTAAG | 3 cut(s) | 731, 3404, 3761 |
| MspI | CCGG | 8 cut(s) | 224, 850, 986, 1023, 2134, 3337, 4485, 4866 |
| MunI | CAATTG | 2 cut(s) | 5250, 5256 |
| Mva1269I | GAATGC | 3 cut(s) | 607, 1133, 4309 |
| NciI | CCSGG | 3 cut(s) | 851, 3337, 4485 |
| NcoI | CCATGG | 2 cut(s) | 1446, 1770 |
| NdeI | CATATG | 1 cut(s) | 2026 |
| NmeAIII | GCCGAG | 3 cut(s) | 3107, 3980, 4905 |
| NmuCI | GTSAC | 9 cut(s) | 845, 1574, 2459, 2903, 3067, 3800, 4081, 4116, 5831 |
| NsiI | ATGCAT | 3 cut(s) | 460, 3694, 4715 |
| NspI | RCATGY | 7 cut(s) | 545, 2984, 3567, 4456, 5419, 5457, 5735 |
| NspV | TTCGAA | 2 cut(s) | 3734, 3983 |
| OliI | CACNNNNGTG | 2 cut(s) | 2156, 5360 |
| PaeI | GCATGC | 3 cut(s) | 545, 2984, 5419 |
| PagI | TCATGA | 1 cut(s) | 5661 |
| PaqCI | CACCTGC | 1 cut(s) | 5392 |
| PciI | ACATGT | 1 cut(s) | 4452 |
| PciSI | GCTCTTC | 3 cut(s) | 465, 1846, 4861 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1156 |
| PctI | GAATGC | 3 cut(s) | 607, 1133, 4309 |
| PdmI | GAANNNNTTC | 2 cut(s) | 159, 474 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 1364, 1661, 2105, 3638 |
| PfoI | TCCNGGA | 1 cut(s) | 5774 |
| PinAI | ACCGGT | 1 cut(s) | 4865 |
| PpuMI | RGGWCCY | 1 cut(s) | 5878 |
| PscI | ACATGT | 1 cut(s) | 4452 |
| PshBI | ATTAAT | 2 cut(s) | 1554, 4950 |
| Psp124BI | GAGCTC | 2 cut(s) | 2611, 5311 |
| Psp5II | RGGWCCY | 1 cut(s) | 5878 |
| PspEI | GGTNACC | 1 cut(s) | 2459 |
| PspFI | CCCAGC | 2 cut(s) | 4359, 5411 |
| PspPPI | RGGWCCY | 1 cut(s) | 5878 |
| PstI | CTGCAG | 8 cut(s) | 298, 1419, 1768, 3009, 3327, 4077, 4827, 4848 |
| PsuI | RGATCY | 4 cut(s) | 199, 1496, 3959, 4229 |
| PvuII | CAGCTG | 2 cut(s) | 121, 5446 |
| RseI | CAYNNNNRTG | 3 cut(s) | 2156, 2574, 5360 |
| SacI | GAGCTC | 2 cut(s) | 2611, 5311 |
| SapI | GCTCTTC | 3 cut(s) | 465, 1846, 4861 |
| ScaI | AGTACT | 1 cut(s) | 4041 |
| SduI | GDGCHC | 8 cut(s) | 574, 1614, 2611, 3707, 3869, 5189, 5311, 5333 |
| SexAI | ACCWGGT | 1 cut(s) | 5095 |
| SfuI | TTCGAA | 2 cut(s) | 3734, 3983 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 2156, 2574, 5360 |
| SphI | GCATGC | 3 cut(s) | 545, 2984, 5419 |
| SsiI | CCGC | 7 cut(s) | 27, 62, 2273, 2282, 3446, 4607, 4996 |
| SspI | AATATT | 1 cut(s) | 4033 |
| SstI | GAGCTC | 2 cut(s) | 2611, 5311 |
| StyI | CCWWGG | 5 cut(s) | 194, 823, 1446, 1770, 5371 |
| TaiI | ACGT | 3 cut(s) | 797, 1162, 4277 |
| TaqI | TCGA | 7 cut(s) | 2138, 2519, 2928, 3734, 3983, 4297, 5742 |
| TaqII | GACCGA | 1 cut(s) | 3361 |
| TatI | WGTACW | 6 cut(s) | 598, 2749, 3305, 3969, 4039, 4586 |
| TauI | GCSGC | 2 cut(s) | 2285, 4999 |
| TseFI | GTSAC | 9 cut(s) | 845, 1574, 2459, 2903, 3067, 3800, 4081, 4116, 5831 |
| Tsp45I | GTSAC | 9 cut(s) | 845, 1574, 2459, 2903, 3067, 3800, 4081, 4116, 5831 |
| TspGWI | ACGGA | 2 cut(s) | 3354, 4695 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 1364, 1661, 2105, 3638 |
| Vha464I | CTTAAG | 3 cut(s) | 731, 3404, 3761 |
| VspI | ATTAAT | 2 cut(s) | 1554, 4950 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 374, 4266 |
| XapI | RAATTY | 8 cut(s) | 619, 742, 871, 1559, 1862, 2002, 2089, 2323 |
| XbaI | TCTAGA | 1 cut(s) | 1982 |
| XceI | RCATGY | 7 cut(s) | 545, 2984, 3567, 4456, 5419, 5457, 5735 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 586, 2879 |
| XmiI | GTMKAC | 2 cut(s) | 1291, 4780 |
| XmnI | GAANNNNTTC | 2 cut(s) | 159, 474 |
| ZrmI | AGTACT | 1 cut(s) | 4041 |
| Zsp2I | ATGCAT | 3 cut(s) | 460, 3694, 4715 |