Component of the Mediator complex, a coactivator involved in regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G55325 AT1G55325 AT1G55325 AT1G55325 |
| fragaria_vesca | FvH4_3g45550 FvH4_3g45550 FvH4_3g45550 FvH4_3g45550 FvH4_3g45550 FvH4_3g45550 FvH4_3g45550 FvH4_3g45550 FvH4_3g45550 FvH4_3g45550 FvH4_3g45550 FvH4_3g45550 |
| malus_domestica | MD03G1004100.v1.1 |
| prunus_persica | Prupe.6G003600_v2.0.a1 Prupe.6G003600_v2.0.a1 Prupe.6G003600_v2.0.a1 Prupe.6G003600_v2.0.a1 |
| pyrus_communis | pycom03g00420 |
| rosa_chinensis | RchiOBHm_Chr5g0083741 |
| rosa_laevigata | RLG00000037049 |
| rosa_multiflora | Rmu_sc0001287.1_g000006 |
| rosa_roxburghii | Rroxscaffold_1G00000840 |
| rosa_rugosa | Rorug05G0485500 Rorug05G0485600 Rorug05G0485700 |
| rosa_samantha | Rh5AG538600 Rh5BG564000 Rh5CG585900 Rh5DG572400 |
| rosa_wichuraiana | Rw5G050090 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 5263 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2372 |
| Acc36I | ACCTGC | 3 cut(s) | 2774, 3204, 5263 |
| AccB1I | GGYRCC | 1 cut(s) | 1436 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 1565, 2606, 3512 |
| AccBSI | CCGCTC | 1 cut(s) | 1687 |
| AccI | GTMKAC | 3 cut(s) | 1195, 4105, 4651 |
| AccII | CGCG | 1 cut(s) | 1264 |
| AclI | AACGTT | 1 cut(s) | 1063 |
| AcoI | YGGCCR | 2 cut(s) | 924, 1671 |
| AcsI | RAATTY | 5 cut(s) | 404, 1463, 1766, 1906, 1993 |
| AcuI | CTGAAG | 8 cut(s) | 959, 1311, 1731, 2226, 2283, 2609, 5075, 5297 |
| AcvI | CACGTG | 1 cut(s) | 5325 |
| AfaI | GTAC | 7 cut(s) | 5, 1300, 2658, 3915, 3945, 5421, 5669 |
| AflII | CTTAAG | 3 cut(s) | 781, 3278, 3635 |
| AflIII | ACRYGT | 2 cut(s) | 2388, 4329 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 5658 |
| AleI | CACNNNNGTG | 2 cut(s) | 2060, 5231 |
| Alw26I | GTCTC | 9 cut(s) | 205, 1545, 2336, 3140, 3645, 4013, 4313, 5244, 5591 |
| Alw44I | GTGCAC | 2 cut(s) | 79, 5685 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1565, 2957, 4714 |
| ApaLI | GTGCAC | 2 cut(s) | 79, 5685 |
| ApoI | RAATTY | 5 cut(s) | 404, 1463, 1766, 1906, 1993 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 4415, 4447 |
| AseI | ATTAAT | 2 cut(s) | 1458, 4821 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 375 |
| AspLEI | GCGC | 1 cut(s) | 2502 |
| AsuC2I | CCSGG | 4 cut(s) | 911, 3211, 4146, 5175 |
| AsuII | TTCGAA | 1 cut(s) | 3608 |
| AvaII | GGWCC | 9 cut(s) | 38, 756, 968, 1934, 2247, 2711, 2776, 3619, 3713 |
| BaeGI | GKGCMC | 5 cut(s) | 83, 2798, 3743, 5060, 5689 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 4725, 4758 |
| BalI | TGGCCA | 1 cut(s) | 926 |
| BamHI | GGATCC | 1 cut(s) | 63 |
| BanI | GGYRCC | 1 cut(s) | 1436 |
| BanII | GRGCYC | 8 cut(s) | 1518, 2515, 2524, 3074, 3581, 5182, 5204, 5754 |
| BauI | CACGAG | 1 cut(s) | 4059 |
| BbrPI | CACGTG | 1 cut(s) | 5325 |
| BbsI | GAAGAC | 4 cut(s) | 1982, 2313, 3777, 4125 |
| BbvCI | CCTCAGC | 3 cut(s) | 894, 1726, 1788 |
| BceAI | ACGGC | 4 cut(s) | 661, 1645, 2925, 5677 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 1430, 1464, 4068, 4102, 5618, 5652 |
| BclI | TGATCA | 4 cut(s) | 835, 1609, 5131, 5494 |
| BcnI | CCSGG | 4 cut(s) | 911, 3211, 4146, 5175 |
| BcoDI | GTCTC | 9 cut(s) | 205, 1545, 2336, 3140, 3645, 4013, 4313, 5244, 5591 |
| BfrI | CTTAAG | 3 cut(s) | 781, 3278, 3635 |
| BfuAI | ACCTGC | 3 cut(s) | 2774, 3204, 5263 |
| BglII | AGATCT | 1 cut(s) | 3833 |
| BmcAI | AGTACT | 1 cut(s) | 3915 |
| Bme18I | GGWCC | 9 cut(s) | 38, 756, 968, 1934, 2247, 2711, 2776, 3619, 3713 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 5658 |
| BmrI | ACTGGG | 1 cut(s) | 4191 |
| BmuI | ACTGGG | 1 cut(s) | 4191 |
| BoxI | GACNNNNGTC | 1 cut(s) | 5603 |
| BpiI | GAAGAC | 4 cut(s) | 1982, 2313, 3777, 4125 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 3061, 3093, 3476, 3508 |
| BpmI | CTGGAG | 5 cut(s) | 1108, 1650, 1716, 5693, 5740 |
| Bpu10I | CCTNAGC | 5 cut(s) | 894, 1726, 1788, 3750, 5023 |
| Bpu14I | TTCGAA | 1 cut(s) | 3608 |
| BpuEI | CTTGAG | 9 cut(s) | 56, 174, 1900, 3344, 3522, 3998, 4488, 5062, 5166 |
| BpuMI | CCSGG | 4 cut(s) | 911, 3211, 4146, 5175 |
| Bsa29I | ATCGAT | 1 cut(s) | 4510 |
| BsaAI | YACGTR | 1 cut(s) | 5325 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2472 |
| BsaWI | WCCGGW | 1 cut(s) | 2037 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 761, 791, 1792, 1822, 5155, 5185, 5425, 5455 |
| Bse3DI | GCAATG | 6 cut(s) | 2003, 2747, 2823, 3129, 3549, 5698 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2472 |
| BseCI | ATCGAT | 1 cut(s) | 4510 |
| BseJI | GATNNNNATC | 1 cut(s) | 2472 |
| BseMI | GCAATG | 6 cut(s) | 2003, 2747, 2823, 3129, 3549, 5698 |
| BseRI | GAGGAG | 4 cut(s) | 543, 4077, 5446, 5737 |
| BseSI | GKGCMC | 5 cut(s) | 83, 2798, 3743, 5060, 5689 |
| BseYI | CCCAGC | 2 cut(s) | 3615, 4236 |
| BsgI | GTGCAG | 3 cut(s) | 1539, 2157, 3163 |
| Bsh1236I | CGCG | 1 cut(s) | 1264 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2042 |
| BshNI | GGYRCC | 1 cut(s) | 1436 |
| BshVI | ATCGAT | 1 cut(s) | 4510 |
| BsiEI | CGRYCG | 1 cut(s) | 2042 |
| BsiSI | CCGG | 6 cut(s) | 890, 911, 2038, 3211, 4145, 5174 |
| BslFI | GGGAC | 4 cut(s) | 223, 260, 893, 3632 |
| BsmAI | GTCTC | 9 cut(s) | 205, 1545, 2336, 3140, 3645, 4013, 4313, 5244, 5591 |
| BsmFI | GGGAC | 4 cut(s) | 223, 260, 893, 3632 |
| BsmI | GAATGC | 7 cut(s) | 166, 508, 2274, 3568, 4186, 4468, 4679 |
| Bsp119I | TTCGAA | 1 cut(s) | 3608 |
| Bsp1407I | TGTACA | 2 cut(s) | 3, 2656 |
| Bsp19I | CCATGG | 3 cut(s) | 975, 1350, 1674 |
| BspDI | ATCGAT | 1 cut(s) | 4510 |
| BspFNI | CGCG | 1 cut(s) | 1264 |
| BspHI | TCATGA | 1 cut(s) | 5532 |
| BspMAI | CTGCAG | 9 cut(s) | 199, 1323, 2860, 2895, 3201, 3951, 4461, 4698, 4719 |
| BspMI | ACCTGC | 3 cut(s) | 2774, 3204, 5263 |
| BspQI | GCTCTTC | 4 cut(s) | 366, 1674, 1750, 4732 |
| BspT104I | TTCGAA | 1 cut(s) | 3608 |
| BspT107I | GGYRCC | 1 cut(s) | 1436 |
| BspTI | CTTAAG | 3 cut(s) | 781, 3278, 3635 |
| BsrBI | CCGCTC | 1 cut(s) | 1687 |
| BsrDI | GCAATG | 6 cut(s) | 2003, 2747, 2823, 3129, 3549, 5698 |
| BsrGI | TGTACA | 2 cut(s) | 3, 2656 |
| BssSI | CACGAG | 1 cut(s) | 4059 |
| BssT1I | CCWWGG | 5 cut(s) | 58, 975, 1350, 1674, 3858 |
| Bst2BI | CACGAG | 1 cut(s) | 4059 |
| BstAFI | CTTAAG | 3 cut(s) | 781, 3278, 3635 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 668, 4693 |
| BstAUI | TGTACA | 2 cut(s) | 3, 2656 |
| BstBAI | YACGTR | 1 cut(s) | 5325 |
| BstBI | TTCGAA | 1 cut(s) | 3608 |
| BstDSI | CCRYGG | 3 cut(s) | 975, 1350, 1674 |
| BstEII | GGTNACC | 2 cut(s) | 1478, 2363 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 275 |
| BstFNI | CGCG | 1 cut(s) | 1264 |
| BstHHI | GCGC | 1 cut(s) | 2502 |
| BstMAI | GTCTC | 9 cut(s) | 205, 1545, 2336, 3140, 3645, 4013, 4313, 5244, 5591 |
| BstMCI | CGRYCG | 1 cut(s) | 2042 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 5603 |
| BstPI | GGTNACC | 2 cut(s) | 1478, 2363 |
| BstSLI | GKGCMC | 5 cut(s) | 83, 2798, 3743, 5060, 5689 |
| BstUI | CGCG | 1 cut(s) | 1264 |
| BstV2I | GAAGAC | 4 cut(s) | 1982, 2313, 3777, 4125 |
| BstX2I | RGATCY | 4 cut(s) | 63, 1400, 1964, 3833 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 3124, 3470 |
| BstYI | RGATCY | 4 cut(s) | 63, 1400, 1964, 3833 |
| Bsu15I | ATCGAT | 1 cut(s) | 4510 |
| BsuTUI | ATCGAT | 1 cut(s) | 4510 |
| BtgI | CCRYGG | 3 cut(s) | 975, 1350, 1674 |
| BtgZI | GCGATG | 1 cut(s) | 1584 |
| BtsI | GCAGTG | 4 cut(s) | 906, 3676, 4086, 5687 |
| BveI | ACCTGC | 3 cut(s) | 2774, 3204, 5263 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1565, 2957, 4714 |
| CciI | TCATGA | 1 cut(s) | 5532 |
| CfoI | GCGC | 1 cut(s) | 2502 |
| ClaI | ATCGAT | 1 cut(s) | 4510 |
| CseI | GACGC | 1 cut(s) | 1247 |
| CsiI | ACCWGGT | 1 cut(s) | 4360 |
| Csp6I | GTAC | 7 cut(s) | 4, 1299, 2657, 3914, 3944, 5420, 5668 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 505, 540 |
| CviQI | GTAC | 7 cut(s) | 4, 1299, 2657, 3914, 3944, 5420, 5668 |
| DraI | TTTAAA | 1 cut(s) | 3976 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2372 |
| DriI | GACNNNNNGTC | 1 cut(s) | 5658 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2372 |
| EaeI | YGGCCR | 2 cut(s) | 924, 1671 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 5658 |
| Ecl136II | GAGCTC | 4 cut(s) | 2513, 3579, 5180, 5752 |
| Eco130I | CCWWGG | 5 cut(s) | 58, 975, 1350, 1674, 3858 |
| Eco24I | GRGCYC | 8 cut(s) | 1518, 2515, 2524, 3074, 3581, 5182, 5204, 5754 |
| Eco32I | GATATC | 2 cut(s) | 1237, 1444 |
| Eco47I | GGWCC | 9 cut(s) | 38, 756, 968, 1934, 2247, 2711, 2776, 3619, 3713 |
| Eco53kI | GAGCTC | 4 cut(s) | 2513, 3579, 5180, 5752 |
| Eco57I | CTGAAG | 8 cut(s) | 959, 1311, 1731, 2226, 2283, 2609, 5075, 5297 |
| Eco72I | CACGTG | 1 cut(s) | 5325 |
| Eco91I | GGTNACC | 2 cut(s) | 1478, 2363 |
| EcoICRI | GAGCTC | 4 cut(s) | 2513, 3579, 5180, 5752 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 275 |
| EcoO109I | RGGNCCY | 2 cut(s) | 756, 3619 |
| EcoO65I | GGTNACC | 2 cut(s) | 1478, 2363 |
| EcoRI | GAATTC | 1 cut(s) | 1766 |
| EcoRV | GATATC | 2 cut(s) | 1237, 1444 |
| EcoT14I | CCWWGG | 5 cut(s) | 58, 975, 1350, 1674, 3858 |
| EcoT22I | ATGCAT | 2 cut(s) | 1330, 3568 |
| EcoT38I | GRGCYC | 8 cut(s) | 1518, 2515, 2524, 3074, 3581, 5182, 5204, 5754 |
| ErhI | CCWWGG | 5 cut(s) | 58, 975, 1350, 1674, 3858 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 711, 743, 5006, 5038 |
| FaqI | GGGAC | 4 cut(s) | 223, 260, 893, 3632 |
| FauI | CCCGC | 1 cut(s) | 5307 |
| FauNDI | CATATG | 2 cut(s) | 1930, 3331 |
| FbaI | TGATCA | 4 cut(s) | 835, 1609, 5131, 5494 |
| FblI | GTMKAC | 3 cut(s) | 1195, 4105, 4651 |
| FriOI | GRGCYC | 8 cut(s) | 1518, 2515, 2524, 3074, 3581, 5182, 5204, 5754 |
| GlaI | GCGC | 1 cut(s) | 2501 |
| GsaI | CCCAGC | 2 cut(s) | 3619, 4240 |
| GsuI | CTGGAG | 5 cut(s) | 1108, 1650, 1716, 5693, 5740 |
| HapII | CCGG | 6 cut(s) | 890, 911, 2038, 3211, 4145, 5174 |
| HgaI | GACGC | 1 cut(s) | 1247 |
| HhaI | GCGC | 1 cut(s) | 2502 |
| Hin6I | GCGC | 1 cut(s) | 2500 |
| HinP1I | GCGC | 1 cut(s) | 2500 |
| HincII | GTYRAC | 2 cut(s) | 1579, 1738 |
| HindII | GTYRAC | 2 cut(s) | 1579, 1738 |
| HindIII | AAGCTT | 1 cut(s) | 1648 |
| HpaII | CCGG | 6 cut(s) | 890, 911, 2038, 3211, 4145, 5174 |
| HpyCH4IV | ACGT | 2 cut(s) | 1063, 5324 |
| HpySE526I | ACGT | 2 cut(s) | 1063, 5324 |
| HspAI | GCGC | 1 cut(s) | 2500 |
| Ksp22I | TGATCA | 4 cut(s) | 835, 1609, 5131, 5494 |
| LguI | GCTCTTC | 4 cut(s) | 366, 1674, 1750, 4732 |
| MabI | ACCWGGT | 1 cut(s) | 4360 |
| MaeII | ACGT | 2 cut(s) | 1063, 5324 |
| MbiI | CCGCTC | 1 cut(s) | 1687 |
| MfeI | CAATTG | 2 cut(s) | 5121, 5127 |
| MflI | RGATCY | 4 cut(s) | 63, 1400, 1964, 3833 |
| MlsI | TGGCCA | 1 cut(s) | 926 |
| MluNI | TGGCCA | 1 cut(s) | 926 |
| MmeI | TCCRAC | 4 cut(s) | 1961, 3436, 3798, 4650 |
| Mox20I | TGGCCA | 1 cut(s) | 926 |
| Mph1103I | ATGCAT | 2 cut(s) | 1330, 3568 |
| MroXI | GAANNNNTTC | 1 cut(s) | 375 |
| MscI | TGGCCA | 1 cut(s) | 926 |
| MslI | CAYNNNNRTG | 5 cut(s) | 2060, 2478, 4127, 5231, 5644 |
| Msp20I | TGGCCA | 1 cut(s) | 926 |
| MspA1I | CMGCKG | 3 cut(s) | 266, 1670, 5317 |
| MspCI | CTTAAG | 3 cut(s) | 781, 3278, 3635 |
| MspI | CCGG | 6 cut(s) | 890, 911, 2038, 3211, 4145, 5174 |
| MunI | CAATTG | 2 cut(s) | 5121, 5127 |
| Mva1269I | GAATGC | 7 cut(s) | 166, 508, 2274, 3568, 4186, 4468, 4679 |
| MvnI | CGCG | 1 cut(s) | 1264 |
| NciI | CCSGG | 4 cut(s) | 911, 3211, 4146, 5175 |
| NcoI | CCATGG | 3 cut(s) | 975, 1350, 1674 |
| NdeI | CATATG | 2 cut(s) | 1930, 3331 |
| NmeAIII | GCCGAG | 1 cut(s) | 4776 |
| NmuCI | GTSAC | 8 cut(s) | 749, 1478, 2363, 2810, 2953, 3674, 3955, 4383 |
| NsiI | ATGCAT | 2 cut(s) | 1330, 3568 |
| NspV | TTCGAA | 1 cut(s) | 3608 |
| OliI | CACNNNNGTG | 2 cut(s) | 2060, 5231 |
| PaeI | GCATGC | 4 cut(s) | 446, 1987, 4725, 5290 |
| PagI | TCATGA | 1 cut(s) | 5532 |
| PaqCI | CACCTGC | 1 cut(s) | 5263 |
| PasI | CCCWGGG | 1 cut(s) | 242 |
| PciI | ACATGT | 2 cut(s) | 2388, 4329 |
| PciSI | GCTCTTC | 4 cut(s) | 366, 1674, 1750, 4732 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1060 |
| PctI | GAATGC | 7 cut(s) | 166, 508, 2274, 3568, 4186, 4468, 4679 |
| PdmI | GAANNNNTTC | 1 cut(s) | 375 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 1565, 2606, 3512 |
| PfoI | TCCNGGA | 1 cut(s) | 5173 |
| PmaCI | CACGTG | 1 cut(s) | 5325 |
| PmlI | CACGTG | 1 cut(s) | 5325 |
| Ppu21I | YACGTR | 1 cut(s) | 5325 |
| PpuMI | RGGWCCY | 2 cut(s) | 756, 3619 |
| PscI | ACATGT | 2 cut(s) | 2388, 4329 |
| PshAI | GACNNNNGTC | 1 cut(s) | 5603 |
| PshBI | ATTAAT | 2 cut(s) | 1458, 4821 |
| Psp124BI | GAGCTC | 4 cut(s) | 2515, 3581, 5182, 5754 |
| Psp1406I | AACGTT | 1 cut(s) | 1063 |
| Psp5II | RGGWCCY | 2 cut(s) | 756, 3619 |
| PspCI | CACGTG | 1 cut(s) | 5325 |
| PspEI | GGTNACC | 2 cut(s) | 1478, 2363 |
| PspFI | CCCAGC | 2 cut(s) | 3615, 4236 |
| PspPPI | RGGWCCY | 2 cut(s) | 756, 3619 |
| PstI | CTGCAG | 9 cut(s) | 199, 1323, 2860, 2895, 3201, 3951, 4461, 4698, 4719 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1565, 2957, 4714 |
| PsuI | RGATCY | 4 cut(s) | 63, 1400, 1964, 3833 |
| PvuII | CAGCTG | 2 cut(s) | 266, 5317 |
| RsaI | GTAC | 7 cut(s) | 5, 1300, 2658, 3915, 3945, 5421, 5669 |
| RsaNI | GTAC | 7 cut(s) | 4, 1299, 2657, 3914, 3944, 5420, 5668 |
| RseI | CAYNNNNRTG | 5 cut(s) | 2060, 2478, 4127, 5231, 5644 |
| SacI | GAGCTC | 4 cut(s) | 2515, 3581, 5182, 5754 |
| SapI | GCTCTTC | 4 cut(s) | 366, 1674, 1750, 4732 |
| ScaI | AGTACT | 1 cut(s) | 3915 |
| SexAI | ACCWGGT | 1 cut(s) | 4360 |
| SfuI | TTCGAA | 1 cut(s) | 3608 |
| SinI | GGWCC | 9 cut(s) | 38, 756, 968, 1934, 2247, 2711, 2776, 3619, 3713 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 2060, 2478, 4127, 5231, 5644 |
| SphI | GCATGC | 4 cut(s) | 446, 1987, 4725, 5290 |
| SspI | AATATT | 2 cut(s) | 2032, 3907 |
| SstI | GAGCTC | 4 cut(s) | 2515, 3581, 5182, 5754 |
| StyI | CCWWGG | 5 cut(s) | 58, 975, 1350, 1674, 3858 |
| TaiI | ACGT | 2 cut(s) | 1066, 5327 |
| TaqI | TCGA | 6 cut(s) | 1770, 1888, 2042, 3608, 4174, 4510 |
| TaqII | GACCGA | 1 cut(s) | 3793 |
| TatI | WGTACW | 3 cut(s) | 3, 2656, 3913 |
| TauI | GCSGC | 4 cut(s) | 166, 1673, 1687, 4870 |
| TseFI | GTSAC | 8 cut(s) | 749, 1478, 2363, 2810, 2953, 3674, 3955, 4383 |
| Tsp45I | GTSAC | 8 cut(s) | 749, 1478, 2363, 2810, 2953, 3674, 3955, 4383 |
| TspGWI | ACGGA | 5 cut(s) | 853, 1846, 3069, 3228, 4566 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 1565, 2606, 3512 |
| Vha464I | CTTAAG | 3 cut(s) | 781, 3278, 3635 |
| VneI | GTGCAC | 2 cut(s) | 79, 5685 |
| VpaK11BI | GGWCC | 9 cut(s) | 38, 756, 968, 1934, 2247, 2711, 2776, 3619, 3713 |
| VspI | ATTAAT | 2 cut(s) | 1458, 4821 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 275 |
| XapI | RAATTY | 5 cut(s) | 404, 1463, 1766, 1906, 1993 |
| XbaI | TCTAGA | 2 cut(s) | 490, 4369 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2786 |
| XmiI | GTMKAC | 3 cut(s) | 1195, 4105, 4651 |
| XmnI | GAANNNNTTC | 1 cut(s) | 375 |
| ZrmI | AGTACT | 1 cut(s) | 3915 |
| Zsp2I | ATGCAT | 2 cut(s) | 1330, 3568 |