Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0008600

Physical Location & Seq

Genomic Coordinates Forward (+)

1235676 .. 1236301

Gene Structure 626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1015600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGAGAAAAAGTCAGGGGCTAGCTCTCTGTCGAAGTACGTTGCAACTCTACGTGAATGTTCTTGTGGGCGAGCATTCATCTGTCTTTGGAAGTAAAGGACGAGAAAGCGATGAAGAAGATGACACCAGGGACGACGAAGGCATTGCTGCCTTTAATTCGTCCTGGTTACCAGGAAAGGATTCCAAAGCTGAACCACCCAAAGATGTGAAAAAGAAGAAAAGGAAGCGAAAGACTGAGTGCCAGGACCGAGTAGACATGGATGAAGATATTGTTCAGGAGTTGGTACTCAGTCCTGAAGAAGAAGACGGGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0008150 GO:0022613 GO:0030684 GO:0030686 GO:0030687 GO:0030689 GO:0030690 GO:0030691 GO:0031974 GO:0031981 GO:0032991 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Noc2

Protein Analysis

105

Amino Acids

11.7

Weight (kDa)

4.85

Isoelectric Point (pI)

59.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18220
fragaria_vesca	FvH4_3g44260 FvH4_3g44260 FvH4_3g44260
malus_domestica	MD03G1015600.v1.1 MD11G1016800.v1.1
prunus_persica	Prupe.6G014700_v2.0.a1 Prupe.6G014700_v2.0.a1 Prupe.6G014700_v2.0.a1
pyrus_communis	pycom03g01270 pycom11g01170
rosa_chinensis	RchiOBHm_Chr5g0080571
rosa_laevigata	RLG00000036871
rosa_multiflora	Rmu_co8190986.1_g000001 Rmu_sc0018418.1_g000003 Rmu_ssc0000263.1_g000016
rosa_roxburghii	Rroxscaffold_1G00002790
rosa_rugosa	Rorug05G0470500
rosa_samantha	Rh5AG523800 Rh5BG545900 Rh5CG569100 Rh5DG556200
rosa_wichuraiana	Rw5G048600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	252
AcuI	CTGAAG	1 cut(s)	315
AfaI	GTAC	2 cut(s)	37, 285
AjnI	CCWGG	4 cut(s)	125, 161, 169, 240
AluBI	AGCT	2 cut(s)	23, 188
AluI	AGCT	2 cut(s)	23, 188
ApeKI	GCWGC	1 cut(s)	146
Asp700I	GAANNNNTTC	1 cut(s)	178
AspS9I	GGNCC	1 cut(s)	244
AsuNHI	GCTAGC	1 cut(s)	19
AvaII	GGWCC	1 cut(s)	244
BbsI	GAAGAC	1 cut(s)	309
BbvI	GCAGC	1 cut(s)	133
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BciT130I	CCWGG	4 cut(s)	127, 163, 171, 242
BfaI	CTAG	1 cut(s)	20
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
Bme1390I	CCNGG	4 cut(s)	127, 163, 171, 242
Bme18I	GGWCC	1 cut(s)	244
BmgT120I	GGNCC	1 cut(s)	244
BmrFI	CCNGG	4 cut(s)	127, 163, 171, 242
BmtI	GCTAGC	1 cut(s)	23
BpiI	GAAGAC	1 cut(s)	309
BsaAI	YACGTR	1 cut(s)	52
BsaJI	CCNNGG	1 cut(s)	126
Bse3DI	GCAATG	1 cut(s)	141
BseBI	CCWGG	4 cut(s)	127, 163, 171, 242
BseDI	CCNNGG	1 cut(s)	126
BseGI	GGATG	1 cut(s)	265
BseMI	GCAATG	1 cut(s)	141
BseMII	CTCAG	2 cut(s)	225, 301
BseXI	GCAGC	1 cut(s)	133
BslFI	GGGAC	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	143
BsmI	GAATGC	1 cut(s)	73
BspCNI	CTCAG	2 cut(s)	226, 300
BspOI	GCTAGC	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	141
BssECI	CCNNGG	1 cut(s)	126
Bst2UI	CCWGG	4 cut(s)	127, 163, 171, 242
BstBAI	YACGTR	1 cut(s)	52
BstC8I	GCNNGC	2 cut(s)	21, 71
BstDEI	CTNAG	3 cut(s)	234, 287, 312
BstEII	GGTNACC	1 cut(s)	165
BstF5I	GGATG	1 cut(s)	265
BstNI	CCWGG	4 cut(s)	127, 163, 171, 242
BstPI	GGTNACC	1 cut(s)	165
BstSCI	CCNGG	4 cut(s)	125, 161, 169, 240
BstV1I	GCAGC	1 cut(s)	133
BstV2I	GAAGAC	1 cut(s)	309
BtgZI	GCGATG	1 cut(s)	123
BtsCI	GGATG	1 cut(s)	265
Cac8I	GCNNGC	2 cut(s)	21, 71
Cfr13I	GGNCC	1 cut(s)	244
Csp6I	GTAC	2 cut(s)	36, 284
CviAII	CATG	1 cut(s)	256
CviJI	RGCY	3 cut(s)	19, 23, 188
CviKI_1	RGCY	3 cut(s)	19, 23, 188
CviQI	GTAC	2 cut(s)	36, 284
DdeI	CTNAG	3 cut(s)	234, 287, 312
Eco47I	GGWCC	1 cut(s)	244
Eco57I	CTGAAG	1 cut(s)	315
Eco91I	GGTNACC	1 cut(s)	165
EcoO65I	GGTNACC	1 cut(s)	165
EcoRII	CCWGG	4 cut(s)	125, 161, 169, 240
FaeI	CATG	1 cut(s)	259
FaiI	YATR	1 cut(s)	257
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	1 cut(s)	255
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	1 cut(s)	272
Fsp4HI	GCNGC	1 cut(s)	147
FspBI	CTAG	1 cut(s)	20
GluI	GCNGC	1 cut(s)	147
Hin1II	CATG	1 cut(s)	259
HinfI	GANTC	1 cut(s)	179
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188III	TCNNGA	2 cut(s)	275, 293
Hpy8I	GTNNAC	1 cut(s)	253
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	1 cut(s)	131
HpyCH4IV	ACGT	2 cut(s)	38, 51
HpyCH4V	TGCA	1 cut(s)	43
HpyF3I	CTNAG	3 cut(s)	234, 287, 312
HpySE526I	ACGT	2 cut(s)	38, 51
Hsp92II	CATG	1 cut(s)	259
Lsp1109I	GCAGC	1 cut(s)	133
MaeI	CTAG	1 cut(s)	20
MaeII	ACGT	2 cut(s)	38, 51
MaeIII	GTNAC	1 cut(s)	165
MboII	GAAGA	7 cut(s)	125, 128, 226, 275, 308, 311, 314
MluCI	AATT	1 cut(s)	154
MroXI	GAANNNNTTC	1 cut(s)	178
MseI	TTAA	1 cut(s)	153
MspR9I	CCNGG	4 cut(s)	127, 163, 171, 242
Mva1269I	GAATGC	1 cut(s)	73
MvaI	CCWGG	4 cut(s)	127, 163, 171, 242
NheI	GCTAGC	1 cut(s)	19
NlaIII	CATG	1 cut(s)	259
PctI	GAATGC	1 cut(s)	73
PdmI	GAANNNNTTC	1 cut(s)	178
PfeI	GAWTC	1 cut(s)	179
PkrI	GCNGC	1 cut(s)	148
Ppu21I	YACGTR	1 cut(s)	52
Psp6I	CCWGG	4 cut(s)	125, 161, 169, 240
PspEI	GGTNACC	1 cut(s)	165
PspGI	CCWGG	4 cut(s)	125, 161, 169, 240
PspPI	GGNCC	1 cut(s)	244
RsaI	GTAC	2 cut(s)	37, 285
RsaNI	GTAC	2 cut(s)	36, 284
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	1 cut(s)	147
Sau96I	GGNCC	1 cut(s)	244
ScrFI	CCNGG	4 cut(s)	127, 163, 171, 242
SetI	ASST	4 cut(s)	25, 41, 54, 190
SinI	GGWCC	1 cut(s)	244
Sse9I	AATT	1 cut(s)	154
SspMI	CTAG	1 cut(s)	20
StyD4I	CCNGG	4 cut(s)	125, 161, 169, 240
TaiI	ACGT	2 cut(s)	41, 54
TaqI	TCGA	1 cut(s)	31
TaqII	GACCGA	1 cut(s)	261
TasI	AATT	1 cut(s)	154
TfiI	GAWTC	1 cut(s)	179
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TseI	GCWGC	1 cut(s)	146
TspDTI	ATGAA	3 cut(s)	66, 126, 276
VpaK11BI	GGWCC	1 cut(s)	244
XmiI	GTMKAC	1 cut(s)	252
XmnI	GAANNNNTTC	1 cut(s)	178
XspI	CTAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.