Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8190986.1

Orthogroup ID

OG0008600

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 698

Gene Structure 698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8190986.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 571 bp

gacccggagttctatgacttcttaaaagagcatgaccaggaacttctgcagtttgacgatgaggacattgaagaagattcggatgctaacttggaggatgaagagacgcaagaaggtgatgagatagaagaggatgaagacactagcgatcatgatgtcaaaaggaaggaaaaggagacgccgaaaaaagttataactagtgaaatggttgattcttggtgcaacatgattcgagaaactgggaaattgagtgctattcattctctcatgaaagctttccgcactgcctgccactatggtgatgataaagaggatgagtctactctagattttagtattatgtctagcagtgtctttaataaagtgatggtatttgtacttaatgaaatggatggaataattcggaacttgttggagctccctgcctttggtgggaaaaaagagaccataatagatcttatgagcacaaaacgatggaagaactacaaccatttagtgaagtcatatcttggaaatgctttacatgtcttgcgtcaaatgactgacacagacatgatatcatttactttac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0008150 GO:0022613 GO:0030684 GO:0030686 GO:0030687 GO:0030689 GO:0030690 GO:0030691 GO:0031974 GO:0031981 GO:0032991 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Noc2

Protein Analysis

190

Amino Acids

22.09

Weight (kDa)

4.41

Isoelectric Point (pI)

56.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18220
fragaria_vesca	FvH4_3g44260 FvH4_3g44260 FvH4_3g44260
malus_domestica	MD03G1015600.v1.1 MD11G1016800.v1.1
prunus_persica	Prupe.6G014700_v2.0.a1 Prupe.6G014700_v2.0.a1 Prupe.6G014700_v2.0.a1
pyrus_communis	pycom03g01270 pycom11g01170
rosa_chinensis	RchiOBHm_Chr5g0080571
rosa_laevigata	RLG00000036871
rosa_multiflora	Rmu_co8190986.1_g000001 Rmu_sc0018418.1_g000003 Rmu_ssc0000263.1_g000016
rosa_roxburghii	Rroxscaffold_1G00002790
rosa_rugosa	Rorug05G0470500
rosa_samantha	Rh5AG523800 Rh5BG545900 Rh5CG569100 Rh5DG556200
rosa_wichuraiana	Rw5G048600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	194
AccI	GTMKAC	1 cut(s)	320
AciI	CCGC	1 cut(s)	280
AcyI	GRCGYC	1 cut(s)	179
AfaI	GTAC	1 cut(s)	378
AfiI	CCNNNNNNNGG	2 cut(s)	428, 432
AflIII	ACRYGT	1 cut(s)	523
AgsI	TTSAA	1 cut(s)	71
AhlI	ACTAGT	1 cut(s)	197
AjnI	CCWGG	1 cut(s)	36
AleI	CACNNNNGTG	1 cut(s)	297
AluBI	AGCT	2 cut(s)	275, 418
AluI	AGCT	2 cut(s)	275, 418
Alw21I	GWGCWC	2 cut(s)	420, 467
Alw26I	GTCTC	3 cut(s)	98, 170, 437
Asp700I	GAANNNNTTC	1 cut(s)	275
AsuC2I	CCSGG	1 cut(s)	5
AsuHPI	GGTGA	2 cut(s)	128, 311
BanII	GRGCYC	1 cut(s)	420
BbsI	GAAGAC	1 cut(s)	144
Bbv12I	GWGCWC	2 cut(s)	420, 467
BccI	CCATC	3 cut(s)	361, 386, 468
BciT130I	CCWGG	1 cut(s)	38
BcnI	CCSGG	1 cut(s)	5
BcoDI	GTCTC	3 cut(s)	98, 170, 437
BcuI	ACTAGT	1 cut(s)	197
BfaI	CTAG	4 cut(s)	144, 198, 326, 345
BfmI	CTRYAG	1 cut(s)	47
BglII	AGATCT	1 cut(s)	454
Bme1390I	CCNGG	2 cut(s)	5, 38
BmrFI	CCNGG	2 cut(s)	5, 38
BmrI	ACTGGG	1 cut(s)	249
BmsI	GCATC	1 cut(s)	73
BmuI	ACTGGG	1 cut(s)	249
BpiI	GAAGAC	1 cut(s)	144
BpuMI	CCSGG	1 cut(s)	5
BsaHI	GRCGYC	1 cut(s)	179
BsaI	GGTCTC	1 cut(s)	437
Bsc4I	CCNNNNNNNGG	2 cut(s)	428, 432
Bse1I	ACTGG	1 cut(s)	244
BseBI	CCWGG	1 cut(s)	38
BseGI	GGATG	5 cut(s)	88, 103, 139, 319, 397
BseLI	CCNNNNNNNGG	2 cut(s)	428, 432
BseNI	ACTGG	1 cut(s)	244
BsiHKAI	GWGCWC	2 cut(s)	420, 467
BsiSI	CCGG	1 cut(s)	5
BslI	CCNNNNNNNGG	2 cut(s)	428, 432
BsmAI	GTCTC	3 cut(s)	98, 170, 437
BsmBI	CGTCTC	2 cut(s)	98, 170
Bso31I	GGTCTC	1 cut(s)	437
Bsp1286I	GDGCHC	2 cut(s)	420, 467
Bsp143I	GATC	2 cut(s)	148, 454
BspACI	CCGC	1 cut(s)	280
BspHI	TCATGA	2 cut(s)	151, 267
BspMAI	CTGCAG	1 cut(s)	51
BspTNI	GGTCTC	1 cut(s)	437
BsrI	ACTGG	1 cut(s)	244
BssMI	GATC	2 cut(s)	148, 454
BssNI	GRCGYC	1 cut(s)	179
Bst2UI	CCWGG	1 cut(s)	38
Bst6I	CTCTTC	2 cut(s)	96, 123
BstACI	GRCGYC	1 cut(s)	179
BstAPI	GCANNNNNTGC	1 cut(s)	288
BstC8I	GCNNGC	1 cut(s)	289
BstF5I	GGATG	5 cut(s)	88, 103, 139, 319, 397
BstKTI	GATC	2 cut(s)	151, 457
BstMAI	GTCTC	3 cut(s)	98, 170, 437
BstMBI	GATC	2 cut(s)	148, 454
BstMWI	GCNNNNNNNGC	1 cut(s)	288
BstNI	CCWGG	1 cut(s)	38
BstNSI	RCATGY	1 cut(s)	527
BstSCI	CCNGG	2 cut(s)	3, 36
BstSFI	CTRYAG	1 cut(s)	47
BstV2I	GAAGAC	1 cut(s)	144
BstX2I	RGATCY	1 cut(s)	454
BstYI	RGATCY	1 cut(s)	454
BtsCI	GGATG	5 cut(s)	88, 103, 139, 319, 397
BtsI	GCAGTG	2 cut(s)	282, 355
BtsIMutI	CAGTG	2 cut(s)	282, 355
Cac8I	GCNNGC	1 cut(s)	289
CciI	TCATGA	2 cut(s)	151, 267
CseI	GACGC	3 cut(s)	115, 187, 521
Csp6I	GTAC	1 cut(s)	377
CviAII	CATG	6 cut(s)	32, 152, 226, 268, 524, 553
CviJI	RGCY	2 cut(s)	275, 418
CviKI_1	RGCY	2 cut(s)	275, 418
CviQI	GTAC	1 cut(s)	377
DpnI	GATC	2 cut(s)	150, 456
DpnII	GATC	2 cut(s)	148, 454
Eam1104I	CTCTTC	2 cut(s)	96, 123
EarI	CTCTTC	2 cut(s)	96, 123
Ecl136II	GAGCTC	1 cut(s)	418
Eco24I	GRGCYC	1 cut(s)	420
Eco31I	GGTCTC	1 cut(s)	437
Eco32I	GATATC	1 cut(s)	558
Eco53kI	GAGCTC	1 cut(s)	418
EcoICRI	GAGCTC	1 cut(s)	418
EcoRII	CCWGG	1 cut(s)	36
EcoRV	GATATC	1 cut(s)	558
EcoT38I	GRGCYC	1 cut(s)	420
Esp3I	CGTCTC	2 cut(s)	98, 170
FaeI	CATG	6 cut(s)	35, 155, 229, 271, 527, 556
FatI	CATG	6 cut(s)	31, 151, 225, 267, 523, 552
FblI	GTMKAC	1 cut(s)	320
FokI	GGATG	5 cut(s)	95, 110, 146, 326, 404
FriOI	GRGCYC	1 cut(s)	420
FspBI	CTAG	4 cut(s)	144, 198, 326, 345
HapII	CCGG	1 cut(s)	5
HgaI	GACGC	3 cut(s)	115, 187, 521
Hin1I	GRCGYC	1 cut(s)	179
Hin1II	CATG	6 cut(s)	35, 155, 229, 271, 527, 556
HindIII	AAGCTT	1 cut(s)	273
HinfI	GANTC	4 cut(s)	77, 212, 229, 317
HpaII	CCGG	1 cut(s)	5
HphI	GGTGA	2 cut(s)	128, 311
Hpy166II	GTNNAC	1 cut(s)	321
Hpy188I	TCNGA	2 cut(s)	82, 405
Hpy188III	TCNNGA	4 cut(s)	152, 233, 268, 326
Hpy8I	GTNNAC	1 cut(s)	321
HpyAV	CCTTC	2 cut(s)	107, 160
HpyCH4V	TGCA	2 cut(s)	49, 222
HpyF10VI	GCNNNNNNNGC	1 cut(s)	288
Hsp92I	GRCGYC	1 cut(s)	179
Hsp92II	CATG	6 cut(s)	35, 155, 229, 271, 527, 556
Kzo9I	GATC	2 cut(s)	148, 454
LmnI	GCTCC	2 cut(s)	415, 423
LpnPI	CCDG	6 cut(s)	18, 23, 50, 225, 301, 435
LweI	GCATC	1 cut(s)	73
MaeI	CTAG	4 cut(s)	144, 198, 326, 345
MalI	GATC	2 cut(s)	150, 456
MboI	GATC	2 cut(s)	148, 454
MboII	GAAGA	6 cut(s)	83, 86, 113, 140, 149, 490
MflI	RGATCY	1 cut(s)	454
MhlI	GDGCHC	2 cut(s)	420, 467
MluCI	AATT	2 cut(s)	245, 399
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	1 cut(s)	393
MnlI	CCTC	4 cut(s)	55, 88, 124, 304
MroXI	GAANNNNTTC	1 cut(s)	275
MseI	TTAA	3 cut(s)	23, 357, 381
MslI	CAYNNNNRTG	2 cut(s)	297, 551
MspI	CCGG	1 cut(s)	5
MspR9I	CCNGG	2 cut(s)	5, 38
MvaI	CCWGG	1 cut(s)	38
MwoI	GCNNNNNNNGC	1 cut(s)	288
NciI	CCSGG	1 cut(s)	5
NdeII	GATC	2 cut(s)	148, 454
NlaIII	CATG	6 cut(s)	35, 155, 229, 271, 527, 556
NspI	RCATGY	1 cut(s)	527
OliI	CACNNNNGTG	1 cut(s)	297
PagI	TCATGA	2 cut(s)	151, 267
PciI	ACATGT	1 cut(s)	523
PdmI	GAANNNNTTC	1 cut(s)	275
PfeI	GAWTC	3 cut(s)	77, 212, 229
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
PscI	ACATGT	1 cut(s)	523
PsiI	TTATAA	1 cut(s)	194
Psp124BI	GAGCTC	1 cut(s)	420
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
PstI	CTGCAG	1 cut(s)	51
PsuI	RGATCY	1 cut(s)	454
RsaI	GTAC	1 cut(s)	378
RsaNI	GTAC	1 cut(s)	377
RseI	CAYNNNNRTG	2 cut(s)	297, 551
SacI	GAGCTC	1 cut(s)	420
SaqAI	TTAA	3 cut(s)	23, 357, 381
Sau3AI	GATC	2 cut(s)	148, 454
SchI	GAGTC	1 cut(s)	326
ScrFI	CCNGG	2 cut(s)	5, 38
SduI	GDGCHC	2 cut(s)	420, 467
SetI	ASST	3 cut(s)	118, 277, 420
SfaNI	GCATC	1 cut(s)	73
SfcI	CTRYAG	1 cut(s)	47
SmiMI	CAYNNNNRTG	2 cut(s)	297, 551
SpeI	ACTAGT	1 cut(s)	197
Sse9I	AATT	2 cut(s)	245, 399
SsiI	CCGC	1 cut(s)	280
SspMI	CTAG	4 cut(s)	144, 198, 326, 345
SstI	GAGCTC	1 cut(s)	420
StyD4I	CCNGG	2 cut(s)	3, 36
TaqI	TCGA	1 cut(s)	232
TasI	AATT	2 cut(s)	245, 399
TatI	WGTACW	1 cut(s)	376
TfiI	GAWTC	3 cut(s)	77, 212, 229
Tru1I	TTAA	3 cut(s)	23, 357, 381
Tru9I	TTAA	3 cut(s)	23, 357, 381
TscAI	CASTG	2 cut(s)	289, 355
TspDTI	ATGAA	5 cut(s)	114, 150, 248, 284, 399
TspRI	CASTG	2 cut(s)	289, 355
XbaI	TCTAGA	1 cut(s)	325
XceI	RCATGY	1 cut(s)	527
XmiI	GTMKAC	1 cut(s)	320
XmnI	GAANNNNTTC	1 cut(s)	275
XspI	CTAG	4 cut(s)	144, 198, 326, 345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.