Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000263.1

Orthogroup ID

OG0008600

Physical Location & Seq

Genomic Coordinates Forward (+)

107098 .. 109610

Gene Structure 2513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000263.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

atgtcaacaacatcagagcctgctagggcgagagatgagagatgtcgcgaagctagcgtgaagtcatatcttggaaatgctttacatgtcttgcgtcaaatgactgacacagacatgatatcatttactttacagcgtcttaaacattcctccatatttctggctgcttttccgattctcctgaggaagtatgttaagactgcccttgatttgtggggtttaggtggaggtgccctcccaattgcctcccttctatttttaagagatctgtgcattcggctgggatctgattgcttagatgaatgcttcaaggggatctacaaagcctatgtcttgaactgccagtttatgaatgcagcaaaattacaacatgtccagtttcttggaaattgtgtaattgaactttacggtgtagaccttccgactgcatatcaacatgccttcattttcattcggcaattagcaatgatcttgcgagaggcacttagttcaaaaactaaggaagcatttagaaaggtttatgagtggaagttcatgaactgccttgagctctggactggggctgtctgtgcctatggctcagaagctgactttagaccggttgtatatcccctgacccaaataatttatggggctgcccgtctagttccaacagctaggtatttacctctcagattgcgttgtattagaatgcttaatcgaattgctgcttcgacgggtactttcacaccagtttctatgttgcttttggacatgcttgaaatgaaagaattgaataggcccaccacaggtggtgttggcaaagctgttgatttgcgtactatacttaaggttagcaagccaaccctgaagacccgagcatttcaggaggcttgtgtgttgtctgttgttgatgagcttgctgagcatttagcgcagtggagctattccattgctttccctgagttgtcctttataccaggtgtgcgattgcgtggcttttgcaaatccaccaaggttgagaggtttcggagagcaacaagagagcttatccgtcaggtatgtactcagggtgaccacacattctctttacttgtgcttgagcttgacatatgccaactgttgagtgaaggaactgtgattttactatttggtatgctaataattgcatcttttaaatgcggggaatggtgctcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0008150 GO:0022613 GO:0030684 GO:0030686 GO:0030687 GO:0030689 GO:0030690 GO:0030691 GO:0031974 GO:0031981 GO:0032991 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Noc2

Protein Analysis

392

Amino Acids

44.26

Weight (kDa)

9.11

Isoelectric Point (pI)

25.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18220
fragaria_vesca	FvH4_3g44260 FvH4_3g44260 FvH4_3g44260
malus_domestica	MD03G1015600.v1.1 MD11G1016800.v1.1
prunus_persica	Prupe.6G014700_v2.0.a1 Prupe.6G014700_v2.0.a1 Prupe.6G014700_v2.0.a1
pyrus_communis	pycom03g01270 pycom11g01170
rosa_chinensis	RchiOBHm_Chr5g0080571
rosa_laevigata	RLG00000036871
rosa_multiflora	Rmu_co8190986.1_g000001 Rmu_sc0018418.1_g000003 Rmu_ssc0000263.1_g000016
rosa_roxburghii	Rroxscaffold_1G00002790
rosa_rugosa	Rorug05G0470500
rosa_samantha	Rh5AG523800 Rh5BG545900 Rh5CG569100 Rh5DG556200
rosa_wichuraiana	Rw5G048600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	230
AccI	GTMKAC	1 cut(s)	414
AccII	CGCG	1 cut(s)	48
AciI	CCGC	1 cut(s)	1161
AclWI	GGATC	2 cut(s)	292, 323
AcuI	CTGAAG	1 cut(s)	869
AfaI	GTAC	3 cut(s)	721, 820, 1045
AfiI	CCNNNNNNNGG	1 cut(s)	788
AflII	CTTAAG	1 cut(s)	827
AflIII	ACRYGT	2 cut(s)	85, 370
AgeI	ACCGGT	1 cut(s)	598
AgsI	TTSAA	6 cut(s)	310, 337, 401, 492, 761, 775
AjnI	CCWGG	1 cut(s)	958
AluBI	AGCT	9 cut(s)	53, 550, 587, 656, 806, 898, 924, 1027, 1084
AluI	AGCT	9 cut(s)	53, 550, 587, 656, 806, 898, 924, 1027, 1084
Alw21I	GWGCWC	2 cut(s)	552, 1175
AlwI	GGATC	2 cut(s)	292, 323
AlwNI	CAGNNNCTG	2 cut(s)	20, 587
Ama87I	CYCGRG	1 cut(s)	855
AoxI	GGCC	1 cut(s)	779
ApeKI	GCWGC	4 cut(s)	164, 356, 635, 707
ArsI	GACNNNNNNTTYG	2 cut(s)	315, 347
AsiGI	ACCGGT	1 cut(s)	598
AspLEI	GCGC	1 cut(s)	916
AspS9I	GGNCC	1 cut(s)	780
AsuHPI	GGTGA	1 cut(s)	1064
AsuNHI	GCTAGC	1 cut(s)	53
AvaI	CYCGRG	1 cut(s)	855
AxyI	CCTNAGG	1 cut(s)	182
BaeGI	GKGCMC	1 cut(s)	235
BanI	GGYRCC	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	552
BbsI	GAAGAC	1 cut(s)	857
Bbv12I	GWGCWC	2 cut(s)	552, 1175
BbvI	GCAGC	4 cut(s)	151, 368, 622, 694
BciT130I	CCWGG	1 cut(s)	960
BfaI	CTAG	4 cut(s)	24, 54, 644, 657
BfrI	CTTAAG	1 cut(s)	827
BglII	AGATCT	1 cut(s)	265
BisI	GCNGC	4 cut(s)	165, 357, 636, 708
BlpI	GCTNAGC	1 cut(s)	903
BlsI	GCNGC	4 cut(s)	166, 358, 637, 709
Bme1390I	CCNGG	1 cut(s)	960
BmeT110I	CYCGRG	1 cut(s)	855
BmgT120I	GGNCC	1 cut(s)	780
BmiI	GGNNCC	1 cut(s)	232
BmrFI	CCNGG	1 cut(s)	960
BmrI	ACTGGG	1 cut(s)	567
BmsI	GCATC	1 cut(s)	1157
BmtI	GCTAGC	1 cut(s)	57
BmuI	ACTGGG	1 cut(s)	567
BpiI	GAAGAC	1 cut(s)	857
BplI	GAGNNNNNCTC	2 cut(s)	219, 251
Bpu1102I	GCTNAGC	1 cut(s)	903
BpuEI	CTTGAG	2 cut(s)	566, 1100
BsaJI	CCNNGG	1 cut(s)	993
BsaWI	WCCGGW	1 cut(s)	598
Bsc4I	CCNNNNNNNGG	1 cut(s)	788
Bse118I	RCCGGY	1 cut(s)	598
Bse1I	ACTGG	4 cut(s)	343, 376, 562, 731
Bse21I	CCTNAGG	1 cut(s)	182
Bse3DI	GCAATG	2 cut(s)	471, 930
BseBI	CCWGG	1 cut(s)	960
BseDI	CCNNGG	1 cut(s)	993
BseLI	CCNNNNNNNGG	1 cut(s)	788
BseMI	GCAATG	2 cut(s)	471, 930
BseMII	CTCAG	6 cut(s)	173, 594, 685, 894, 933, 1061
BseNI	ACTGG	4 cut(s)	343, 376, 562, 731
BseSI	GKGCMC	1 cut(s)	235
BseXI	GCAGC	4 cut(s)	151, 368, 622, 694
BseYI	CCCAGC	1 cut(s)	280
Bsh1236I	CGCG	1 cut(s)	48
BshFI	GGCC	1 cut(s)	781
BshNI	GGYRCC	1 cut(s)	230
BshTI	ACCGGT	1 cut(s)	598
BsiHKAI	GWGCWC	2 cut(s)	552, 1175
BsiHKCI	CYCGRG	1 cut(s)	855
BsiSI	CCGG	1 cut(s)	599
BslI	CCNNNNNNNGG	1 cut(s)	788
BsmI	GAATGC	4 cut(s)	273, 308, 358, 696
BsnI	GGCC	1 cut(s)	781
BsoBI	CYCGRG	1 cut(s)	855
Bsp1286I	GDGCHC	3 cut(s)	235, 552, 1175
Bsp143I	GATC	4 cut(s)	265, 284, 315, 468
Bsp1720I	GCTNAGC	1 cut(s)	903
Bsp68I	TCGCGA	1 cut(s)	48
BspACI	CCGC	1 cut(s)	1161
BspANI	GGCC	1 cut(s)	781
BspCNI	CTCAG	6 cut(s)	174, 593, 684, 895, 934, 1060
BspFNI	CGCG	1 cut(s)	48
BspHI	TCATGA	1 cut(s)	534
BspLI	GGNNCC	1 cut(s)	232
BspOI	GCTAGC	1 cut(s)	57
BspPI	GGATC	2 cut(s)	292, 323
BspT107I	GGYRCC	1 cut(s)	230
BspTI	CTTAAG	1 cut(s)	827
BsrDI	GCAATG	2 cut(s)	471, 930
BsrFI	RCCGGY	1 cut(s)	598
BsrI	ACTGG	4 cut(s)	343, 376, 562, 731
BssAI	RCCGGY	1 cut(s)	598
BssECI	CCNNGG	1 cut(s)	993
BssMI	GATC	4 cut(s)	265, 284, 315, 468
BssT1I	CCWWGG	1 cut(s)	993
Bst2UI	CCWGG	1 cut(s)	960
Bst4CI	ACNGT	3 cut(s)	410, 1101, 1117
BstAFI	CTTAAG	1 cut(s)	827
BstC8I	GCNNGC	4 cut(s)	21, 55, 839, 900
BstDEI	CTNAG	9 cut(s)	182, 295, 485, 498, 580, 671, 903, 942, 1047
BstEII	GGTNACC	1 cut(s)	1052
BstFNI	CGCG	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	916
BstKTI	GATC	4 cut(s)	268, 287, 318, 471
BstMBI	GATC	4 cut(s)	265, 284, 315, 468
BstMWI	GCNNNNNNNGC	4 cut(s)	54, 569, 904, 913
BstNI	CCWGG	1 cut(s)	960
BstNSI	RCATGY	4 cut(s)	89, 374, 440, 757
BstPI	GGTNACC	1 cut(s)	1052
BstSCI	CCNGG	1 cut(s)	958
BstSLI	GKGCMC	1 cut(s)	235
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	4 cut(s)	151, 368, 622, 694
BstV2I	GAAGAC	1 cut(s)	857
BstX2I	RGATCY	3 cut(s)	265, 284, 315
BstXI	CCANNNNNNTGG	2 cut(s)	160, 383
BstYI	RGATCY	3 cut(s)	265, 284, 315
Bsu36I	CCTNAGG	1 cut(s)	182
BsuRI	GGCC	1 cut(s)	781
BtsI	GCAGTG	1 cut(s)	923
BtsIMutI	CAGTG	1 cut(s)	923
BtuMI	TCGCGA	1 cut(s)	48
Cac8I	GCNNGC	4 cut(s)	21, 55, 839, 900
CaiI	CAGNNNCTG	2 cut(s)	20, 587
CciI	TCATGA	1 cut(s)	534
CfoI	GCGC	1 cut(s)	916
Cfr10I	RCCGGY	1 cut(s)	598
Cfr13I	GGNCC	1 cut(s)	780
CseI	GACGC	2 cut(s)	83, 125
CsiI	ACCWGGT	1 cut(s)	958
Csp6I	GTAC	3 cut(s)	720, 819, 1044
CspAI	ACCGGT	1 cut(s)	598
CspCI	CAANNNNNGTGG	2 cut(s)	979, 1014
CviAII	CATG	6 cut(s)	86, 115, 371, 437, 535, 754
CviQI	GTAC	3 cut(s)	720, 819, 1044
DdeI	CTNAG	9 cut(s)	182, 295, 485, 498, 580, 671, 903, 942, 1047
DpnI	GATC	4 cut(s)	267, 286, 317, 470
DpnII	GATC	4 cut(s)	265, 284, 315, 468
DraI	TTTAAA	1 cut(s)	1156
Ecl136II	GAGCTC	1 cut(s)	550
Eco130I	CCWWGG	1 cut(s)	993
Eco24I	GRGCYC	1 cut(s)	552
Eco32I	GATATC	1 cut(s)	120
Eco53kI	GAGCTC	1 cut(s)	550
Eco57I	CTGAAG	1 cut(s)	869
Eco81I	CCTNAGG	1 cut(s)	182
Eco88I	CYCGRG	1 cut(s)	855
Eco91I	GGTNACC	1 cut(s)	1052
EcoICRI	GAGCTC	1 cut(s)	550
EcoO65I	GGTNACC	1 cut(s)	1052
EcoRII	CCWGG	1 cut(s)	958
EcoRV	GATATC	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	993
EcoT38I	GRGCYC	1 cut(s)	552
ErhI	CCWWGG	1 cut(s)	993
FaeI	CATG	6 cut(s)	89, 118, 374, 440, 538, 757
FatI	CATG	6 cut(s)	85, 114, 370, 436, 534, 753
FauI	CCCGC	1 cut(s)	1154
FauNDI	CATATG	1 cut(s)	1091
FblI	GTMKAC	1 cut(s)	414
Fnu4HI	GCNGC	4 cut(s)	165, 357, 636, 708
FriOI	GRGCYC	1 cut(s)	552
Fsp4HI	GCNGC	4 cut(s)	165, 357, 636, 708
FspBI	CTAG	4 cut(s)	24, 54, 644, 657
GlaI	GCGC	1 cut(s)	915
GluI	GCNGC	4 cut(s)	165, 357, 636, 708
GsaI	CCCAGC	1 cut(s)	284
HaeIII	GGCC	1 cut(s)	781
HapII	CCGG	1 cut(s)	599
HgaI	GACGC	2 cut(s)	83, 125
HhaI	GCGC	1 cut(s)	916
Hin1II	CATG	6 cut(s)	89, 118, 374, 440, 538, 757
Hin6I	GCGC	1 cut(s)	914
HinP1I	GCGC	1 cut(s)	914
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	1 cut(s)	175
HpaII	CCGG	1 cut(s)	599
HphI	GGTGA	1 cut(s)	1064
Hpy166II	GTNNAC	2 cut(s)	6, 415
Hpy188I	TCNGA	7 cut(s)	16, 174, 289, 423, 583, 674, 1011
Hpy188III	TCNNGA	6 cut(s)	47, 181, 334, 535, 553, 866
Hpy8I	GTNNAC	2 cut(s)	6, 415
Hpy99I	CGWCG	1 cut(s)	718
HpyAV	CCTTC	4 cut(s)	260, 428, 451, 1103
HpyCH4III	ACNGT	3 cut(s)	410, 1101, 1117
HpyCH4V	TGCA	5 cut(s)	273, 356, 428, 984, 1148
HpyF10VI	GCNNNNNNNGC	4 cut(s)	54, 569, 904, 913
HpyF3I	CTNAG	9 cut(s)	182, 295, 485, 498, 580, 671, 903, 942, 1047
Hsp92II	CATG	6 cut(s)	89, 118, 374, 440, 538, 757
HspAI	GCGC	1 cut(s)	914
Kzo9I	GATC	4 cut(s)	265, 284, 315, 468
LmnI	GCTCC	1 cut(s)	921
Lsp1109I	GCAGC	4 cut(s)	151, 368, 622, 694
LweI	GCATC	1 cut(s)	1157
MabI	ACCWGGT	1 cut(s)	958
MaeI	CTAG	4 cut(s)	24, 54, 644, 657
MaeIII	GTNAC	1 cut(s)	1052
MalI	GATC	4 cut(s)	267, 286, 317, 470
MboI	GATC	4 cut(s)	265, 284, 315, 468
MboII	GAAGA	1 cut(s)	862
MfeI	CAATTG	1 cut(s)	240
MflI	RGATCY	3 cut(s)	265, 284, 315
MhlI	GDGCHC	3 cut(s)	235, 552, 1175
MluCI	AATT	9 cut(s)	240, 362, 388, 396, 458, 624, 702, 770, 1143
MmeI	TCCRAC	2 cut(s)	446, 674
MnlI	CCTC	9 cut(s)	160, 177, 221, 245, 256, 472, 678, 862, 996
MseI	TTAA	6 cut(s)	141, 195, 260, 696, 828, 1155
MslI	CAYNNNNRTG	1 cut(s)	113
MspCI	CTTAAG	1 cut(s)	827
MspI	CCGG	1 cut(s)	599
MspR9I	CCNGG	1 cut(s)	960
MunI	CAATTG	1 cut(s)	240
Mva1269I	GAATGC	4 cut(s)	273, 308, 358, 696
MvaI	CCWGG	1 cut(s)	960
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	4 cut(s)	54, 569, 904, 913
NdeI	CATATG	1 cut(s)	1091
NdeII	GATC	4 cut(s)	265, 284, 315, 468
NheI	GCTAGC	1 cut(s)	53
NlaIII	CATG	6 cut(s)	89, 118, 374, 440, 538, 757
NlaIV	GGNNCC	1 cut(s)	232
NmuCI	GTSAC	1 cut(s)	1052
NruI	TCGCGA	1 cut(s)	48
NspI	RCATGY	4 cut(s)	89, 374, 440, 757
PagI	TCATGA	1 cut(s)	534
PciI	ACATGT	2 cut(s)	85, 370
PctI	GAATGC	4 cut(s)	273, 308, 358, 696
PfeI	GAWTC	1 cut(s)	175
PinAI	ACCGGT	1 cut(s)	598
PkrI	GCNGC	4 cut(s)	166, 358, 637, 709
PscI	ACATGT	2 cut(s)	85, 370
Psp124BI	GAGCTC	1 cut(s)	552
Psp6I	CCWGG	1 cut(s)	958
PspEI	GGTNACC	1 cut(s)	1052
PspFI	CCCAGC	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	958
PspN4I	GGNNCC	1 cut(s)	232
PspPI	GGNCC	1 cut(s)	780
PstNI	CAGNNNCTG	2 cut(s)	20, 587
PsuI	RGATCY	3 cut(s)	265, 284, 315
RruI	TCGCGA	1 cut(s)	48
RsaI	GTAC	3 cut(s)	721, 820, 1045
RsaNI	GTAC	3 cut(s)	720, 819, 1044
RseI	CAYNNNNRTG	1 cut(s)	113
SacI	GAGCTC	1 cut(s)	552
SaqAI	TTAA	6 cut(s)	141, 195, 260, 696, 828, 1155
SatI	GCNGC	4 cut(s)	165, 357, 636, 708
Sau3AI	GATC	4 cut(s)	265, 284, 315, 468
Sau96I	GGNCC	1 cut(s)	780
ScrFI	CCNGG	1 cut(s)	960
SduI	GDGCHC	3 cut(s)	235, 552, 1175
SexAI	ACCWGGT	1 cut(s)	958
SfaNI	GCATC	1 cut(s)	1157
SmiMI	CAYNNNNRTG	1 cut(s)	113
SmlI	CTYRAG	3 cut(s)	545, 827, 1079
SmoI	CTYRAG	3 cut(s)	545, 827, 1079
Sse9I	AATT	9 cut(s)	240, 362, 388, 396, 458, 624, 702, 770, 1143
SsiI	CCGC	1 cut(s)	1161
SspMI	CTAG	4 cut(s)	24, 54, 644, 657
SstI	GAGCTC	1 cut(s)	552
StyD4I	CCNGG	1 cut(s)	958
StyI	CCWWGG	1 cut(s)	993
TaaI	ACNGT	3 cut(s)	410, 1101, 1117
TaqI	TCGA	2 cut(s)	700, 713
TasI	AATT	9 cut(s)	240, 362, 388, 396, 458, 624, 702, 770, 1143
TatI	WGTACW	1 cut(s)	1043
TfiI	GAWTC	1 cut(s)	175
Tru1I	TTAA	6 cut(s)	141, 195, 260, 696, 828, 1155
Tru9I	TTAA	6 cut(s)	141, 195, 260, 696, 828, 1155
TscAI	CASTG	1 cut(s)	923
TseFI	GTSAC	1 cut(s)	1052
TseI	GCWGC	4 cut(s)	164, 356, 635, 707
Tsp45I	GTSAC	1 cut(s)	1052
TspDTI	ATGAA	7 cut(s)	315, 365, 433, 439, 523, 551, 779
TspGWI	ACGGA	1 cut(s)	1022
TspRI	CASTG	1 cut(s)	923
Vha464I	CTTAAG	1 cut(s)	827
XceI	RCATGY	4 cut(s)	89, 374, 440, 757
XcmI	CCANNNNNNNNNTGG	1 cut(s)	626
XmiI	GTMKAC	1 cut(s)	414
XspI	CTAG	4 cut(s)	24, 54, 644, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.