Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0008600

Physical Location & Seq

Genomic Coordinates Forward (+)

995148 .. 996060

Gene Structure 913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g01270.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGACCATTTGCGTTTCTTTCTGGAATCGGACTTTAAGTCACGAAGTTAATGATGCTAACATGAAAGAATCTGAAACACAAGATGATGAGATAGAAGCAGACGAAGACGGTGATGATGTTACACAAAAGAAAAAGAAACAATCTAAAGAAGTTGTTACAAGTGAAATGGTTGATTCCTGGTGCAACGCCATTAAAGAACATGGGAAATTGAGTACTAGTCATTCCCTAATGAAGAGGACGAGTCATTGTTGGACTTCAGTGTCATGTCTATCAGTGTCTTTAACAAAATCGTTGTACTTTGTCATTTTGTTTTATTTTGATATCATTTTGGAGAAACTGAAGTCCTTTGTTCTTGTGGGCGAGCATTCATCCGTGTTAGGAAGTAAAGGACGAGAAAGCAATGAAGATGATACCAGGGACGAGGAAGGCACTGCTGTCTTTAGTTCGTCCTGGTTACCAGGAAAGGACTCCAAGTATGAGCAGAACCACCCAAGATGTGAGAAGAAATGGAAGAGAAAGACTGAGCGCCAGGACCAAGTTGCCATGGATGAAGATATTGTTCAGGAGTTGGTACTCAGTTCTGATGAAGAAGACGGGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0008150 GO:0022613 GO:0030684 GO:0030686 GO:0030687 GO:0030689 GO:0030690 GO:0030691 GO:0031974 GO:0031981 GO:0032991 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Noc2

Protein Analysis

201

Amino Acids

22.87

Weight (kDa)

4.87

Isoelectric Point (pI)

40.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18220
fragaria_vesca	FvH4_3g44260 FvH4_3g44260 FvH4_3g44260
malus_domestica	MD03G1015600.v1.1 MD11G1016800.v1.1
prunus_persica	Prupe.6G014700_v2.0.a1 Prupe.6G014700_v2.0.a1 Prupe.6G014700_v2.0.a1
pyrus_communis	pycom03g01270 pycom11g01170
rosa_chinensis	RchiOBHm_Chr5g0080571
rosa_laevigata	RLG00000036871
rosa_multiflora	Rmu_co8190986.1_g000001 Rmu_sc0018418.1_g000003 Rmu_ssc0000263.1_g000016
rosa_roxburghii	Rroxscaffold_1G00002790
rosa_rugosa	Rorug05G0470500
rosa_samantha	Rh5AG523800 Rh5BG545900 Rh5CG569100 Rh5DG556200
rosa_wichuraiana	Rw5G048600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	259
AcuI	CTGAAG	2 cut(s)	240, 359
AfaI	GTAC	3 cut(s)	214, 296, 573
AhdI	GACNNNNNGTC	1 cut(s)	36
AhlI	ACTAGT	1 cut(s)	215
AjnI	CCWGG	5 cut(s)	176, 413, 449, 457, 528
AspLEI	GCGC	1 cut(s)	528
AspS9I	GGNCC	1 cut(s)	532
AsuHPI	GGTGA	1 cut(s)	122
AvaII	GGWCC	1 cut(s)	532
BbsI	GAAGAC	2 cut(s)	111, 597
BciT130I	CCWGG	5 cut(s)	178, 415, 451, 459, 530
BcuI	ACTAGT	1 cut(s)	215
BfaI	CTAG	1 cut(s)	216
BfoI	RGCGCY	1 cut(s)	529
BmcAI	AGTACT	1 cut(s)	214
Bme1390I	CCNGG	5 cut(s)	178, 415, 451, 459, 530
Bme18I	GGWCC	1 cut(s)	532
BmeRI	GACNNNNNGTC	1 cut(s)	36
BmgT120I	GGNCC	1 cut(s)	532
BmrFI	CCNGG	5 cut(s)	178, 415, 451, 459, 530
BmsI	GCATC	1 cut(s)	43
BpiI	GAAGAC	2 cut(s)	111, 597
BsaJI	CCNNGG	2 cut(s)	414, 543
Bse3DI	GCAATG	1 cut(s)	406
BseBI	CCWGG	5 cut(s)	178, 415, 451, 459, 530
BseDI	CCNNGG	2 cut(s)	414, 543
BseGI	GGATG	2 cut(s)	368, 553
BseMI	GCAATG	1 cut(s)	406
BseMII	CTCAG	2 cut(s)	513, 589
BslFI	GGGAC	1 cut(s)	431
BsmFI	GGGAC	1 cut(s)	431
BsmI	GAATGC	1 cut(s)	364
Bsp19I	CCATGG	1 cut(s)	543
BspCNI	CTCAG	2 cut(s)	514, 588
BsrDI	GCAATG	1 cut(s)	406
BssECI	CCNNGG	2 cut(s)	414, 543
BssT1I	CCWWGG	1 cut(s)	543
Bst2UI	CCWGG	5 cut(s)	178, 415, 451, 459, 530
Bst4CI	ACNGT	1 cut(s)	110
Bst6I	CTCTTC	2 cut(s)	227, 506
BstC8I	GCNNGC	1 cut(s)	362
BstDEI	CTNAG	2 cut(s)	522, 575
BstDSI	CCRYGG	1 cut(s)	543
BstEII	GGTNACC	1 cut(s)	453
BstF5I	GGATG	2 cut(s)	368, 553
BstH2I	RGCGCY	1 cut(s)	529
BstHHI	GCGC	1 cut(s)	528
BstNI	CCWGG	5 cut(s)	178, 415, 451, 459, 530
BstPI	GGTNACC	1 cut(s)	453
BstSCI	CCNGG	5 cut(s)	176, 413, 449, 457, 528
BstV2I	GAAGAC	2 cut(s)	111, 597
BtgI	CCRYGG	1 cut(s)	543
BtsCI	GGATG	2 cut(s)	368, 553
BtsI	GCAGTG	1 cut(s)	429
BtsIMutI	CAGTG	3 cut(s)	264, 279, 429
Cac8I	GCNNGC	1 cut(s)	362
CfoI	GCGC	1 cut(s)	528
Cfr13I	GGNCC	1 cut(s)	532
Csp6I	GTAC	3 cut(s)	213, 295, 572
CviAII	CATG	4 cut(s)	61, 200, 264, 544
CviQI	GTAC	3 cut(s)	213, 295, 572
DdeI	CTNAG	2 cut(s)	522, 575
DrdI	GACNNNNNNGTC	1 cut(s)	259
DriI	GACNNNNNGTC	1 cut(s)	36
DseDI	GACNNNNNNGTC	1 cut(s)	259
Eam1104I	CTCTTC	2 cut(s)	227, 506
Eam1105I	GACNNNNNGTC	1 cut(s)	36
EarI	CTCTTC	2 cut(s)	227, 506
Eco130I	CCWWGG	1 cut(s)	543
Eco32I	GATATC	1 cut(s)	322
Eco47I	GGWCC	1 cut(s)	532
Eco57I	CTGAAG	2 cut(s)	240, 359
Eco91I	GGTNACC	1 cut(s)	453
EcoO65I	GGTNACC	1 cut(s)	453
EcoRII	CCWGG	5 cut(s)	176, 413, 449, 457, 528
EcoRV	GATATC	1 cut(s)	322
EcoT14I	CCWWGG	1 cut(s)	543
ErhI	CCWWGG	1 cut(s)	543
FaeI	CATG	4 cut(s)	64, 203, 267, 547
FaiI	YATR	5 cut(s)	62, 201, 265, 477, 545
FaqI	GGGAC	1 cut(s)	431
FatI	CATG	4 cut(s)	60, 199, 263, 543
FokI	GGATG	2 cut(s)	355, 560
FspBI	CTAG	1 cut(s)	216
GlaI	GCGC	1 cut(s)	527
HaeII	RGCGCY	1 cut(s)	529
HhaI	GCGC	1 cut(s)	528
Hin1II	CATG	4 cut(s)	64, 203, 267, 547
Hin6I	GCGC	1 cut(s)	526
HinP1I	GCGC	1 cut(s)	526
HinfI	GANTC	5 cut(s)	25, 68, 173, 241, 467
HphI	GGTGA	1 cut(s)	122
Hpy188I	TCNGA	3 cut(s)	30, 73, 583
Hpy188III	TCNNGA	3 cut(s)	22, 41, 563
HpyAV	CCTTC	1 cut(s)	419
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4V	TGCA	1 cut(s)	183
HpyF3I	CTNAG	2 cut(s)	522, 575
Hsp92II	CATG	4 cut(s)	64, 203, 267, 547
HspAI	GCGC	1 cut(s)	526
LweI	GCATC	1 cut(s)	43
MaeI	CTAG	1 cut(s)	216
MaeIII	GTNAC	4 cut(s)	38, 118, 154, 453
MboII	GAAGA	8 cut(s)	116, 244, 416, 514, 523, 563, 599, 602
MluCI	AATT	1 cut(s)	206
MlyI	GAGTC	2 cut(s)	250, 461
MmeI	TCCRAC	1 cut(s)	230
MnlI	CCTC	2 cut(s)	228, 415
MseI	TTAA	5 cut(s)	35, 48, 192, 281, 601
MspR9I	CCNGG	5 cut(s)	178, 415, 451, 459, 530
Mva1269I	GAATGC	1 cut(s)	364
MvaI	CCWGG	5 cut(s)	178, 415, 451, 459, 530
NcoI	CCATGG	1 cut(s)	543
NlaIII	CATG	4 cut(s)	64, 203, 267, 547
NmuCI	GTSAC	1 cut(s)	38
PctI	GAATGC	1 cut(s)	364
PfeI	GAWTC	3 cut(s)	25, 68, 173
PleI	GAGTC	2 cut(s)	249, 461
PpsI	GAGTC	2 cut(s)	249, 461
Psp6I	CCWGG	5 cut(s)	176, 413, 449, 457, 528
PspEI	GGTNACC	1 cut(s)	453
PspGI	CCWGG	5 cut(s)	176, 413, 449, 457, 528
PspPI	GGNCC	1 cut(s)	532
RsaI	GTAC	3 cut(s)	214, 296, 573
RsaNI	GTAC	3 cut(s)	213, 295, 572
SaqAI	TTAA	5 cut(s)	35, 48, 192, 281, 601
Sau96I	GGNCC	1 cut(s)	532
ScaI	AGTACT	1 cut(s)	214
SchI	GAGTC	2 cut(s)	250, 461
ScrFI	CCNGG	5 cut(s)	178, 415, 451, 459, 530
SfaNI	GCATC	1 cut(s)	43
SinI	GGWCC	1 cut(s)	532
SpeI	ACTAGT	1 cut(s)	215
Sse9I	AATT	1 cut(s)	206
SspMI	CTAG	1 cut(s)	216
StyD4I	CCNGG	5 cut(s)	176, 413, 449, 457, 528
StyI	CCWWGG	1 cut(s)	543
TaaI	ACNGT	1 cut(s)	110
TasI	AATT	1 cut(s)	206
TatI	WGTACW	2 cut(s)	212, 294
TfiI	GAWTC	3 cut(s)	25, 68, 173
Tru1I	TTAA	5 cut(s)	35, 48, 192, 281, 601
Tru9I	TTAA	5 cut(s)	35, 48, 192, 281, 601
TscAI	CASTG	3 cut(s)	264, 279, 436
TseFI	GTSAC	1 cut(s)	38
Tsp45I	GTSAC	1 cut(s)	38
TspDTI	ATGAA	6 cut(s)	77, 245, 357, 417, 564, 600
TspGWI	ACGGA	1 cut(s)	361
TspRI	CASTG	3 cut(s)	264, 279, 436
VpaK11BI	GGWCC	1 cut(s)	532
XspI	CTAG	1 cut(s)	216
ZrmI	AGTACT	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.