Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008600

Physical Location & Seq

Genomic Coordinates Forward (+)

64704755 .. 64705321

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0470500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGATATGGACATACTGAGTTGGAATTGCAGAGGAATCTGCAACGACACCACAATTCGGGCGTTGAAGGATTTGATATCCCAGAACAGACCCCAAATTATTTTTCTTTGCGAAACCAAAATCAACAATATCAGGGCCTTTAACGATCTGCGTTTGGCGCTTGGTTTTTCCCAGGCTAAGGAAGTGTTGAGTGTAGGACAGTCTGGTGGTTTGGGCATGTTCTGGAATGATGATGTGAAGGTGGAGGTGGGTACGACGTCACAACATCATATTGATATTATGGTTGATGGAGGTCCTGGAACCCCTAGGTGGAGACGTACAGGTTTTTACGGATTTGCTCGAACGGTGGATAGAGACAAATCATGGCAGCTTTTGCGTTATTTGAGTGATTTGGAGGCCCTTCCCTGGGTCGTTATCGGGGATTTTAATGAAATCCTAAATAGCAGTGAGAAGAAAGATGGTCCGATTAGGGCAGAAAGGCAGATGCGTGGTTTTAGAGAAGCCCTAGGGTATGGGGATTTGCTTGATCTTGGTTCAGGGGCCTCAGGCAACTTGGTGGAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0008150 GO:0022613 GO:0030684 GO:0030686 GO:0030687 GO:0030689 GO:0030690 GO:0030691 GO:0031974 GO:0031981 GO:0032991 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Noc2

Protein Analysis

188

Amino Acids

21.13

Weight (kDa)

5.44

Isoelectric Point (pI)

28.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos	PF03372	6 - 161	6.7e-15	Endonuclease/Exonuclease/phosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18220
fragaria_vesca	FvH4_3g44260 FvH4_3g44260 FvH4_3g44260
malus_domestica	MD03G1015600.v1.1 MD11G1016800.v1.1
prunus_persica	Prupe.6G014700_v2.0.a1 Prupe.6G014700_v2.0.a1 Prupe.6G014700_v2.0.a1
pyrus_communis	pycom03g01270 pycom11g01170
rosa_chinensis	RchiOBHm_Chr5g0080571
rosa_laevigata	RLG00000036871
rosa_multiflora	Rmu_co8190986.1_g000001 Rmu_sc0018418.1_g000003 Rmu_ssc0000263.1_g000016
rosa_roxburghii	Rroxscaffold_1G00002790
rosa_rugosa	Rorug05G0470500
rosa_samantha	Rh5AG523800 Rh5BG545900 Rh5CG569100 Rh5DG556200
rosa_wichuraiana	Rw5G048600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	260
AcsI	RAATTY	1 cut(s)	560
AcyI	GRCGYC	1 cut(s)	257
AfaI	GTAC	2 cut(s)	253, 319
AfiI	CCNNNNNNNGG	5 cut(s)	57, 178, 309, 405, 406
AgsI	TTSAA	1 cut(s)	67
AjnI	CCWGG	3 cut(s)	171, 295, 404
AjuI	GAANNNNNNNTTGG	2 cut(s)	87, 119
AluBI	AGCT	1 cut(s)	370
AluI	AGCT	1 cut(s)	370
Alw26I	GTCTC	2 cut(s)	307, 348
AoxI	GGCC	3 cut(s)	135, 396, 540
ApeKI	GCWGC	1 cut(s)	367
ApoI	RAATTY	1 cut(s)	560
AspA2I	CCTAGG	2 cut(s)	305, 505
AspLEI	GCGC	1 cut(s)	160
AspS9I	GGNCC	5 cut(s)	135, 293, 397, 461, 540
AvaII	GGWCC	2 cut(s)	293, 461
AvrII	CCTAGG	2 cut(s)	305, 505
AxyI	CCTNAGG	1 cut(s)	544
BbvI	GCAGC	1 cut(s)	379
BccI	CCATC	2 cut(s)	281, 452
BciT130I	CCWGG	3 cut(s)	173, 297, 406
BcoDI	GTCTC	2 cut(s)	307, 348
BfaI	CTAG	2 cut(s)	306, 506
BfoI	RGCGCY	1 cut(s)	161
BisI	GCNGC	1 cut(s)	368
BlnI	CCTAGG	2 cut(s)	305, 505
BlsI	GCNGC	1 cut(s)	369
Bme1390I	CCNGG	3 cut(s)	173, 297, 406
Bme18I	GGWCC	2 cut(s)	293, 461
BmgT120I	GGNCC	5 cut(s)	135, 293, 397, 461, 540
BmiI	GGNNCC	2 cut(s)	301, 541
BmrFI	CCNGG	3 cut(s)	173, 297, 406
BmsI	GCATC	1 cut(s)	474
Bpu10I	CCTNAGC	1 cut(s)	177
BsaHI	GRCGYC	1 cut(s)	257
BsaJI	CCNNGG	5 cut(s)	171, 305, 404, 405, 505
Bsc4I	CCNNNNNNNGG	5 cut(s)	57, 178, 309, 405, 406
Bse21I	CCTNAGG	1 cut(s)	544
BseBI	CCWGG	3 cut(s)	173, 297, 406
BseDI	CCNNGG	5 cut(s)	171, 305, 404, 405, 505
BseLI	CCNNNNNNNGG	5 cut(s)	57, 178, 309, 405, 406
BseMII	CTCAG	2 cut(s)	8, 558
BseXI	GCAGC	1 cut(s)	379
BshFI	GGCC	3 cut(s)	137, 398, 542
BslI	CCNNNNNNNGG	5 cut(s)	57, 178, 309, 405, 406
BsmAI	GTCTC	2 cut(s)	307, 348
BsmBI	CGTCTC	1 cut(s)	307
BsnI	GGCC	3 cut(s)	137, 398, 542
Bsp143I	GATC	2 cut(s)	145, 526
BspANI	GGCC	3 cut(s)	137, 398, 542
BspCNI	CTCAG	2 cut(s)	9, 557
BspLI	GGNNCC	2 cut(s)	301, 541
BssECI	CCNNGG	5 cut(s)	171, 305, 404, 405, 505
BssMI	GATC	2 cut(s)	145, 526
BssNI	GRCGYC	1 cut(s)	257
BssT1I	CCWWGG	2 cut(s)	305, 505
Bst2UI	CCWGG	3 cut(s)	173, 297, 406
Bst4CI	ACNGT	2 cut(s)	201, 346
BstACI	GRCGYC	1 cut(s)	257
BstAPI	GCANNNNNTGC	1 cut(s)	373
BstDEI	CTNAG	3 cut(s)	17, 177, 544
BstH2I	RGCGCY	1 cut(s)	161
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	2 cut(s)	148, 529
BstMAI	GTCTC	2 cut(s)	307, 348
BstMBI	GATC	2 cut(s)	145, 526
BstMWI	GCNNNNNNNGC	2 cut(s)	157, 373
BstNI	CCWGG	3 cut(s)	173, 297, 406
BstNSI	RCATGY	1 cut(s)	220
BstSCI	CCNGG	3 cut(s)	171, 295, 404
BstV1I	GCAGC	1 cut(s)	379
Bsu36I	CCTNAGG	1 cut(s)	544
BsuRI	GGCC	3 cut(s)	137, 398, 542
BtsI	GCAGTG	1 cut(s)	451
BtsIMutI	CAGTG	1 cut(s)	451
CfoI	GCGC	1 cut(s)	160
Cfr13I	GGNCC	5 cut(s)	135, 293, 397, 461, 540
Csp6I	GTAC	2 cut(s)	252, 318
CviAII	CATG	2 cut(s)	217, 363
CviJI	RGCY	6 cut(s)	137, 176, 370, 398, 503, 542
CviKI_1	RGCY	6 cut(s)	137, 176, 370, 398, 503, 542
CviQI	GTAC	2 cut(s)	252, 318
DdeI	CTNAG	3 cut(s)	17, 177, 544
DpnI	GATC	2 cut(s)	147, 528
DpnII	GATC	2 cut(s)	145, 526
Eco130I	CCWWGG	2 cut(s)	305, 505
Eco32I	GATATC	1 cut(s)	78
Eco47I	GGWCC	2 cut(s)	293, 461
Eco81I	CCTNAGG	1 cut(s)	544
EcoO109I	RGGNCCY	4 cut(s)	135, 293, 397, 540
EcoRI	GAATTC	1 cut(s)	560
EcoRII	CCWGG	3 cut(s)	171, 295, 404
EcoRV	GATATC	1 cut(s)	78
EcoT14I	CCWWGG	2 cut(s)	305, 505
ErhI	CCWWGG	2 cut(s)	305, 505
Esp3I	CGTCTC	1 cut(s)	307
FaeI	CATG	2 cut(s)	220, 366
FaiI	YATR	7 cut(s)	8, 14, 218, 270, 281, 364, 513
FatI	CATG	2 cut(s)	216, 362
Fnu4HI	GCNGC	1 cut(s)	368
Fsp4HI	GCNGC	1 cut(s)	368
FspBI	CTAG	2 cut(s)	306, 506
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	1 cut(s)	368
HaeII	RGCGCY	1 cut(s)	161
HaeIII	GGCC	3 cut(s)	137, 398, 542
HhaI	GCGC	1 cut(s)	160
Hin1I	GRCGYC	1 cut(s)	257
Hin1II	CATG	2 cut(s)	220, 366
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HinfI	GANTC	1 cut(s)	36
Hpy188I	TCNGA	2 cut(s)	465, 566
Hpy188III	TCNNGA	1 cut(s)	223
Hpy99I	CGWCG	1 cut(s)	259
HpyAV	CCTTC	3 cut(s)	61, 232, 410
HpyCH4III	ACNGT	2 cut(s)	201, 346
HpyCH4IV	ACGT	2 cut(s)	257, 316
HpyCH4V	TGCA	2 cut(s)	30, 42
HpyF10VI	GCNNNNNNNGC	2 cut(s)	157, 373
HpyF3I	CTNAG	3 cut(s)	17, 177, 544
HpySE526I	ACGT	2 cut(s)	257, 316
Hsp92I	GRCGYC	1 cut(s)	257
Hsp92II	CATG	2 cut(s)	220, 366
HspAI	GCGC	1 cut(s)	158
Kzo9I	GATC	2 cut(s)	145, 526
Lsp1109I	GCAGC	1 cut(s)	379
LweI	GCATC	1 cut(s)	474
MaeI	CTAG	2 cut(s)	306, 506
MaeII	ACGT	2 cut(s)	257, 316
MaeIII	GTNAC	1 cut(s)	258
MalI	GATC	2 cut(s)	147, 528
MboI	GATC	2 cut(s)	145, 526
MboII	GAAGA	1 cut(s)	463
MluCI	AATT	4 cut(s)	25, 54, 96, 560
MnlI	CCTC	5 cut(s)	26, 238, 284, 388, 553
MseI	TTAA	2 cut(s)	141, 426
MspR9I	CCNGG	3 cut(s)	173, 297, 406
MvaI	CCWGG	3 cut(s)	173, 297, 406
MwoI	GCNNNNNNNGC	2 cut(s)	157, 373
NdeII	GATC	2 cut(s)	145, 526
NlaIII	CATG	2 cut(s)	220, 366
NlaIV	GGNNCC	2 cut(s)	301, 541
NmuCI	GTSAC	1 cut(s)	258
NspI	RCATGY	1 cut(s)	220
PasI	CCCWGGG	1 cut(s)	405
PfeI	GAWTC	1 cut(s)	36
PfoI	TCCNGGA	1 cut(s)	295
PkrI	GCNGC	1 cut(s)	369
PpuMI	RGGWCCY	1 cut(s)	293
Psp5II	RGGWCCY	1 cut(s)	293
Psp6I	CCWGG	3 cut(s)	171, 295, 404
PspGI	CCWGG	3 cut(s)	171, 295, 404
PspN4I	GGNNCC	2 cut(s)	301, 541
PspPI	GGNCC	5 cut(s)	135, 293, 397, 461, 540
PspPPI	RGGWCCY	1 cut(s)	293
RsaI	GTAC	2 cut(s)	253, 319
RsaNI	GTAC	2 cut(s)	252, 318
SaqAI	TTAA	2 cut(s)	141, 426
SatI	GCNGC	1 cut(s)	368
Sau3AI	GATC	2 cut(s)	145, 526
Sau96I	GGNCC	5 cut(s)	135, 293, 397, 461, 540
ScrFI	CCNGG	3 cut(s)	173, 297, 406
SetI	ASST	8 cut(s)	243, 249, 260, 295, 311, 319, 325, 372
SfaNI	GCATC	1 cut(s)	474
SinI	GGWCC	2 cut(s)	293, 461
Sse9I	AATT	4 cut(s)	25, 54, 96, 560
SspMI	CTAG	2 cut(s)	306, 506
StyD4I	CCNGG	3 cut(s)	171, 295, 404
StyI	CCWWGG	2 cut(s)	305, 505
TaaI	ACNGT	2 cut(s)	201, 346
TaiI	ACGT	2 cut(s)	260, 319
TaqI	TCGA	1 cut(s)	340
TasI	AATT	4 cut(s)	25, 54, 96, 560
TfiI	GAWTC	1 cut(s)	36
Tru1I	TTAA	2 cut(s)	141, 426
Tru9I	TTAA	2 cut(s)	141, 426
TscAI	CASTG	1 cut(s)	451
TseFI	GTSAC	1 cut(s)	258
TseI	GCWGC	1 cut(s)	367
Tsp45I	GTSAC	1 cut(s)	258
TspDTI	ATGAA	1 cut(s)	444
TspGWI	ACGGA	1 cut(s)	345
TspRI	CASTG	1 cut(s)	451
VpaK11BI	GGWCC	2 cut(s)	293, 461
XapI	RAATTY	1 cut(s)	560
XceI	RCATGY	1 cut(s)	220
XmaJI	CCTAGG	2 cut(s)	305, 505
XspI	CTAG	2 cut(s)	306, 506
ZraI	GACGTC	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.